Wall clock time and date at job start Tue Mar 31 2020 22:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 113.99883 * 2 1 4 4 C 1.53003 * 109.46943 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46921 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46941 * 180.02562 * 5 4 3 7 7 O 1.21274 * 119.99943 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99880 * 180.02562 * 6 5 4 9 9 C 1.46923 * 120.62916 * 359.97438 * 8 6 5 10 10 C 1.53198 * 108.77434 * 126.41612 * 9 8 6 11 11 C 1.53039 * 109.31321 * 54.63380 * 10 9 8 12 12 C 1.53041 * 109.53517 * 298.63224 * 11 10 9 13 13 H 1.08994 * 109.52820 * 301.40188 * 12 11 10 14 14 C 1.53002 * 109.49867 * 181.31800 * 12 11 10 15 15 H 1.09007 * 109.51933 * 300.08810 * 14 12 11 16 16 C 1.53036 * 109.49348 * 60.15972 * 14 12 11 17 17 C 1.53049 * 109.53508 * 181.31811 * 16 14 12 18 18 C 1.53192 * 109.31262 * 298.63920 * 17 16 14 19 19 N 1.46929 * 108.77548 * 54.63447 * 18 17 16 20 20 C 1.36935 * 120.62734 * 126.36907 * 19 18 17 21 21 H 1.07998 * 119.99812 * 207.68031 * 20 19 18 22 22 C 1.38807 * 120.00249 * 27.68424 * 20 19 18 23 23 N 1.31622 * 120.00399 * 17.36761 * 22 20 19 24 24 Si 1.86806 * 120.00130 * 197.37103 * 22 20 19 25 25 H 1.48497 * 109.47018 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46924 * 119.99913 * 24 22 20 27 27 H 1.48500 * 109.47193 * 240.00009 * 24 22 20 28 28 C 1.46925 * 118.73773 * 306.39217 * 19 18 17 29 29 C 1.46923 * 120.62962 * 180.02562 * 8 6 5 30 30 H 1.09002 * 109.46950 * 60.00465 * 1 2 3 31 31 H 1.09005 * 109.46893 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47189 * 299.99743 * 1 2 3 33 33 H 1.08996 * 109.47235 * 60.00071 * 3 2 1 34 34 H 1.08998 * 109.47432 * 299.99495 * 3 2 1 35 35 H 1.09000 * 109.47424 * 60.00344 * 4 3 2 36 36 H 1.08994 * 109.47121 * 299.99902 * 4 3 2 37 37 H 1.08996 * 109.47196 * 60.00105 * 5 4 3 38 38 H 1.08998 * 109.47493 * 299.99515 * 5 4 3 39 39 H 1.09003 * 109.58529 * 246.19924 * 9 8 6 40 40 H 1.08998 * 109.59109 * 6.62556 * 9 8 6 41 41 H 1.09004 * 109.49343 * 174.58822 * 10 9 8 42 42 H 1.08997 * 109.49157 * 294.64486 * 10 9 8 43 43 H 1.08996 * 109.45575 * 178.61543 * 11 10 9 44 44 H 1.08998 * 109.46247 * 58.65532 * 11 10 9 45 45 H 1.09002 * 109.45757 * 61.30413 * 16 14 12 46 46 H 1.08997 * 109.45778 * 301.33436 * 16 14 12 47 47 H 1.09002 * 109.49343 * 178.68997 * 17 16 14 48 48 H 1.08994 * 109.52143 * 58.60795 * 17 16 14 49 49 H 1.08998 * 109.58377 * 174.42215 * 18 17 16 50 50 H 1.09006 * 109.58809 * 294.84584 * 18 17 16 51 51 H 0.96996 * 120.00742 * 179.97438 * 23 22 20 52 52 H 1.09000 * 109.58223 * 293.81607 * 28 19 18 53 53 H 1.08999 * 109.57983 * 173.39820 * 28 19 18 54 54 H 1.08999 * 109.58656 * 113.79900 * 29 8 6 55 55 H 1.08998 * 109.58383 * 353.37345 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5823 -0.0013 6 6 5.6601 2.4633 -0.0026 7 8 6.1816 1.3684 -0.0024 8 7 6.4240 3.5737 -0.0028 9 6 5.8068 4.9070 -0.0024 10 6 6.3815 5.7160 1.1647 11 6 7.9087 5.7304 1.0670 12 6 8.4412 4.2989 1.1632 13 1 8.1223 3.8541 2.1057 14 6 9.9697 4.3171 1.0984 15 1 10.2891 4.7617 0.1557 16 6 10.5205 5.1415 2.2642 17 6 12.0480 5.1877 2.1817 18 6 12.6046 3.7646 2.2902 19 7 11.9698 2.9289 1.2619 20 6 12.7310 2.2058 0.3829 21 1 12.3449 1.9686 -0.5975 22 6 13.9988 1.7775 0.7517 23 7 14.3424 1.7557 2.0221 24 14 15.2175 1.2323 -0.5549 25 1 14.5914 1.3512 -1.8961 26 1 16.4257 2.0936 -0.4950 27 1 15.6043 -0.1807 -0.3121 28 6 10.5027 2.8843 1.1945 29 6 7.8898 3.4738 -0.0046 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8568 0.6439 -0.8909 36 1 3.8574 0.6435 0.8891 37 1 3.8365 3.1235 0.8887 38 1 3.8358 3.1230 -0.8913 39 1 6.0289 5.4128 -0.9420 40 1 4.7276 4.8101 0.1166 41 1 6.0043 6.7377 1.1197 42 1 6.0810 5.2585 2.1073 43 1 8.3191 6.3261 1.8824 44 1 8.2075 6.1658 0.1135 45 1 10.2215 4.6825 3.2066 46 1 10.1231 6.1551 2.2119 47 1 12.4383 5.7943 2.9990 48 1 12.3483 5.6242 1.2292 49 1 13.6831 3.7812 2.1331 50 1 12.3833 3.3600 3.2779 51 1 15.2281 1.4561 2.2800 52 1 10.1101 2.4078 2.0928 53 1 10.1945 2.3198 0.3145 54 1 8.2815 3.8630 -0.9444 55 1 8.1851 2.4312 0.1129 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700199843.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:03 Heat of formation + Delta-G solvation = -105.467917 kcal Electronic energy + Delta-G solvation = -30539.498261 eV Core-core repulsion = 26575.107143 eV Total energy + Delta-G solvation = -3964.391118 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.39781 -39.84853 -38.86068 -38.06957 -35.58976 -34.68845 -33.73130 -32.85977 -32.22158 -30.01086 -28.70322 -27.43236 -26.83093 -25.82100 -24.73759 -23.75265 -22.72759 -22.54708 -21.20756 -20.66207 -19.77643 -18.72188 -18.15113 -17.39792 -17.32620 -16.88870 -16.60239 -16.41119 -15.89322 -15.83324 -15.59099 -15.36627 -15.17690 -14.88488 -14.65231 -14.60926 -14.29931 -14.13085 -13.91939 -13.72296 -13.54774 -13.25785 -13.01980 -12.98868 -12.87550 -12.66257 -12.58801 -12.39681 -12.27177 -12.01519 -11.96427 -11.90413 -11.87476 -11.75633 -11.72812 -11.43767 -11.41126 -11.13347 -10.86734 -10.71904 -10.58810 -10.55852 -9.58161 -8.69796 -7.89990 -5.35642 1.42418 1.43191 1.54941 1.64570 1.99421 2.48068 2.87762 3.23165 3.54756 3.59533 3.79492 3.85869 3.96273 3.98567 4.12363 4.14874 4.22093 4.25327 4.29554 4.40381 4.42181 4.47184 4.48918 4.52204 4.56251 4.59908 4.61268 4.65026 4.70970 4.79252 4.84435 4.85600 4.87952 4.93669 4.95762 5.04710 5.08542 5.10669 5.11453 5.20079 5.25145 5.25928 5.36019 5.41455 5.45823 5.53833 5.58307 5.59892 5.65970 5.77804 6.28560 6.36334 6.47864 7.12260 7.21468 7.83996 8.35536 9.16008 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.002385 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.292215 B =11736.195103 C =13206.756178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.428 6.428 3 C 0.064 3.936 4 C -0.105 4.105 5 C -0.121 4.121 6 C 0.500 3.500 7 O -0.598 6.598 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.129 4.129 11 C -0.113 4.113 12 C -0.079 4.079 13 H 0.056 0.944 14 C -0.081 4.081 15 H 0.066 0.934 16 C -0.094 4.094 17 C -0.132 4.132 18 C 0.174 3.826 19 N -0.610 5.610 20 C -0.262 4.262 21 H 0.062 0.938 22 C -0.054 4.054 23 N -0.936 5.936 24 Si 0.968 3.032 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.292 1.292 28 C 0.151 3.849 29 C 0.116 3.884 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.052 0.948 49 H 0.051 0.949 50 H -0.011 1.011 51 H 0.250 0.750 52 H -0.004 1.004 53 H 0.040 0.960 54 H 0.069 0.931 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.995 13.454 -3.439 32.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.348 6.348 3 C -0.012 4.012 4 C -0.143 4.143 5 C -0.160 4.160 6 C 0.290 3.710 7 O -0.479 6.479 8 N -0.342 5.342 9 C -0.022 4.022 10 C -0.167 4.167 11 C -0.150 4.150 12 C -0.099 4.099 13 H 0.074 0.926 14 C -0.102 4.102 15 H 0.084 0.916 16 C -0.132 4.132 17 C -0.171 4.171 18 C 0.048 3.952 19 N -0.334 5.334 20 C -0.392 4.392 21 H 0.079 0.921 22 C -0.249 4.249 23 N -0.582 5.582 24 Si 0.796 3.204 25 H -0.192 1.192 26 H -0.211 1.211 27 H -0.220 1.220 28 C 0.025 3.975 29 C -0.007 4.007 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.102 0.898 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.007 0.993 51 H 0.059 0.941 52 H 0.014 0.986 53 H 0.058 0.942 54 H 0.087 0.913 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.489 12.671 -3.394 31.364 hybrid contribution 1.376 -1.090 -0.244 1.772 sum -27.112 11.582 -3.639 29.706 Atomic orbital electron populations 1.22918 0.79294 1.03628 1.01157 1.87861 1.21725 1.29531 1.95690 1.22591 0.92189 0.84344 1.02041 1.21185 0.94043 0.96584 1.02506 1.21576 0.88354 0.98777 1.07333 1.21502 0.91380 0.83237 0.74884 1.90727 1.76276 1.28727 1.52134 1.48305 1.06089 1.07445 1.72366 1.22158 0.99403 0.80677 0.99987 1.21929 0.94732 1.01777 0.98301 1.21627 0.96190 0.94022 1.03178 1.21363 0.93502 0.97578 0.97414 0.92553 1.21446 0.93773 0.95731 0.99215 0.91598 1.21434 0.94425 1.00200 0.97112 1.22027 0.96889 0.97138 1.01041 1.20636 0.97136 0.88538 0.88849 1.44349 1.00716 1.51191 1.37110 1.19519 0.97957 1.27748 0.93965 0.92067 1.25830 1.01475 0.99980 0.97648 1.70209 1.20169 1.51959 1.15883 0.85196 0.78964 0.77046 0.79201 1.19193 1.21136 1.21955 1.21057 0.83842 0.95610 0.96953 1.21534 0.79964 1.00453 0.98714 0.92731 0.89253 0.92801 0.91222 0.91081 0.92886 0.93110 0.85543 0.85320 0.89773 0.86488 0.87574 0.91953 0.90479 0.91036 0.93520 0.89326 0.91209 0.92883 0.93019 0.99336 0.94080 0.98641 0.94175 0.91250 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.43 -8.25 10.70 -148.98 -1.59 -9.85 16 3 C 0.06 0.87 5.94 71.98 0.43 1.30 16 4 C -0.10 -2.01 4.87 30.60 0.15 -1.86 16 5 C -0.12 -1.65 4.05 29.85 0.12 -1.53 16 6 C 0.50 12.58 7.70 87.66 0.67 13.26 16 7 O -0.60 -22.47 15.39 -3.01 -0.05 -22.51 16 8 N -0.61 -13.20 2.97 -818.81 -2.43 -15.64 16 9 C 0.10 1.07 6.34 86.37 0.55 1.61 16 10 C -0.13 -1.42 6.08 30.67 0.19 -1.23 16 11 C -0.11 -1.92 4.86 30.62 0.15 -1.77 16 12 C -0.08 -2.06 1.93 -10.70 -0.02 -2.08 16 13 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 14 C -0.08 -2.71 1.92 -10.72 -0.02 -2.73 16 15 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 16 C -0.09 -2.96 4.86 30.62 0.15 -2.81 16 17 C -0.13 -5.00 6.08 30.67 0.19 -4.81 16 18 C 0.17 8.85 5.31 86.36 0.46 9.31 16 19 N -0.61 -32.85 2.99 -699.11 -2.09 -34.94 16 20 C -0.26 -15.38 9.58 84.03 0.81 -14.57 16 21 H 0.06 3.56 7.89 -2.91 -0.02 3.54 16 22 C -0.05 -3.20 4.91 84.86 0.42 -2.79 16 23 N -0.94 -58.17 11.19 21.65 0.24 -57.92 16 24 Si 0.97 47.17 29.59 68.60 2.03 49.20 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 C 0.15 6.86 5.28 86.36 0.46 7.32 16 29 C 0.12 3.30 5.20 86.38 0.45 3.75 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.13 0.95 7.69 -2.39 -0.02 0.93 16 38 H 0.13 0.89 7.94 -2.39 -0.02 0.87 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.12 0.48 5.93 -2.39 -0.01 0.47 16 41 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 1.25 6.34 -2.39 -0.02 1.23 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 2.12 6.34 -2.39 -0.02 2.11 16 47 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.05 2.96 6.03 -2.39 -0.01 2.94 16 50 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 51 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 52 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 53 H 0.04 1.88 6.69 -2.39 -0.02 1.87 16 54 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 55 H 0.05 2.03 5.76 -2.39 -0.01 2.01 16 Total: -1.00 -81.86 413.62 3.32 -78.54 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.83 Total: 11.22 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 6.38 Total: 1.91 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -4.28 Total: -108.50 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.64 Total: -32.36 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -81.86 3.32 -78.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700199843.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.933 kcal (2) G-P(sol) polarization free energy of solvation -81.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds