Wall clock time and date at job start Tue Mar 31 2020 22:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99905 * 2 1 4 4 C 1.52994 * 109.47201 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47573 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47435 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99797 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99927 * 180.02562 * 6 5 4 9 9 C 1.46926 * 120.63159 * 359.97438 * 8 6 5 10 10 C 1.53188 * 108.77709 * 233.58833 * 9 8 6 11 11 C 1.53038 * 109.31403 * 305.36509 * 10 9 8 12 12 C 1.53037 * 109.53589 * 61.36916 * 11 10 9 13 13 H 1.08998 * 109.50239 * 58.61499 * 12 11 10 14 14 C 1.53005 * 109.49848 * 178.68239 * 12 11 10 15 15 H 1.08999 * 109.49886 * 59.99476 * 14 12 11 16 16 C 1.53041 * 109.49704 * 299.92996 * 14 12 11 17 17 C 1.53034 * 109.53957 * 178.68306 * 16 14 12 18 18 C 1.53192 * 109.31410 * 61.36638 * 17 16 14 19 19 N 1.46921 * 108.77415 * 305.36731 * 18 17 16 20 20 C 1.36935 * 120.63080 * 233.60539 * 19 18 17 21 21 H 1.08000 * 120.00370 * 151.82541 * 20 19 18 22 22 C 1.38816 * 119.99882 * 331.82996 * 20 19 18 23 23 N 1.31620 * 120.00242 * 343.07413 * 22 20 19 24 24 Si 1.86805 * 120.00027 * 163.08338 * 22 20 19 25 25 H 1.48494 * 109.47161 * 59.99822 * 24 22 20 26 26 H 1.48497 * 109.46846 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46942 * 299.99473 * 24 22 20 28 28 C 1.46936 * 118.76681 * 53.58912 * 19 18 17 29 29 C 1.46924 * 120.62988 * 179.72427 * 8 6 5 30 30 H 1.09006 * 109.47089 * 300.00184 * 1 2 3 31 31 H 1.09001 * 109.47207 * 59.99561 * 1 2 3 32 32 H 1.09001 * 109.47444 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47296 * 60.00164 * 3 2 1 34 34 H 1.09001 * 109.47089 * 300.00424 * 3 2 1 35 35 H 1.09005 * 109.47432 * 59.99949 * 4 3 2 36 36 H 1.09001 * 109.47364 * 300.00156 * 4 3 2 37 37 H 1.09005 * 109.46912 * 59.99473 * 5 4 3 38 38 H 1.09001 * 109.46775 * 300.00359 * 5 4 3 39 39 H 1.08999 * 109.58780 * 353.38584 * 9 8 6 40 40 H 1.09003 * 109.58058 * 113.80254 * 9 8 6 41 41 H 1.08995 * 109.49597 * 65.32225 * 10 9 8 42 42 H 1.09007 * 109.49619 * 185.41822 * 10 9 8 43 43 H 1.09008 * 109.45624 * 181.38190 * 11 10 9 44 44 H 1.08992 * 109.46557 * 301.34375 * 11 10 9 45 45 H 1.09001 * 109.46124 * 298.71014 * 16 14 12 46 46 H 1.09009 * 109.45649 * 58.67766 * 16 14 12 47 47 H 1.09006 * 109.50093 * 181.32335 * 17 16 14 48 48 H 1.09001 * 109.50040 * 301.38241 * 17 16 14 49 49 H 1.09000 * 109.58214 * 65.15123 * 18 17 16 50 50 H 1.08996 * 109.58885 * 185.57720 * 18 17 16 51 51 H 0.96997 * 120.00365 * 180.02562 * 23 22 20 52 52 H 1.09000 * 109.61368 * 186.64178 * 28 19 18 53 53 H 1.08998 * 109.56190 * 66.20845 * 28 19 18 54 54 H 1.09007 * 109.58654 * 246.19814 * 29 8 6 55 55 H 1.09003 * 109.58877 * 6.61933 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6600 2.4634 0.0000 7 8 6.1816 1.3685 0.0000 8 7 6.4239 3.5738 0.0010 9 6 5.8067 4.9071 0.0016 10 6 6.3813 5.7170 -1.1648 11 6 7.9085 5.7313 -1.0672 12 6 8.4410 4.2999 -1.1646 13 1 8.1221 3.8563 -2.1077 14 6 9.9696 4.3182 -1.0999 15 1 10.2886 4.7607 -0.1562 16 6 10.5202 5.1453 -2.2639 17 6 12.0476 5.1915 -2.1815 18 6 12.6044 3.7687 -2.2935 19 7 11.9697 2.9305 -1.2672 20 6 12.7310 2.2048 -0.3903 21 1 12.3485 1.9719 0.5924 22 6 13.9947 1.7687 -0.7644 23 7 14.3350 1.7505 -2.0357 24 14 15.2121 1.2072 0.5364 25 1 14.6426 0.0576 1.2841 26 1 16.4793 0.7929 -0.1176 27 1 15.4822 2.3245 1.4767 28 6 10.5027 2.8853 -1.1990 29 6 7.8898 3.4739 0.0071 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6440 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 3.8364 3.1228 0.8904 38 1 3.8357 3.1239 -0.8895 39 1 4.7275 4.8102 -0.1172 40 1 6.0290 5.4121 0.9417 41 1 6.0812 5.2599 -2.1077 42 1 6.0042 6.7387 -1.1189 43 1 8.3188 6.3276 -1.8824 44 1 8.2074 6.1660 -0.1135 45 1 10.2210 4.6887 -3.2074 46 1 10.1229 6.1589 -2.2090 47 1 12.4378 5.8002 -2.9972 48 1 12.3476 5.6260 -1.2278 49 1 12.3829 3.3665 -3.2821 50 1 13.6828 3.7849 -2.1365 51 1 15.2178 1.4453 -2.2972 52 1 10.1945 2.3193 -0.3199 53 1 10.1099 2.4107 -2.0981 54 1 8.2787 3.8643 0.9476 55 1 8.1855 2.4311 -0.1081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700199845.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:07 Heat of formation + Delta-G solvation = -105.451902 kcal Electronic energy + Delta-G solvation = -30537.731221 eV Core-core repulsion = 26573.340798 eV Total energy + Delta-G solvation = -3964.390423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.39047 -39.84174 -38.85966 -38.06345 -35.58407 -34.68788 -33.72983 -32.85312 -32.21827 -30.00558 -28.70167 -27.42597 -26.82987 -25.81521 -24.73856 -23.75002 -22.72530 -22.54545 -21.20621 -20.65911 -19.77696 -18.71622 -18.14935 -17.39745 -17.32599 -16.88204 -16.60104 -16.41095 -15.88970 -15.83325 -15.59124 -15.36859 -15.17601 -14.87695 -14.65060 -14.60820 -14.29443 -14.12978 -13.91931 -13.72140 -13.53963 -13.25468 -13.02178 -12.98808 -12.84249 -12.63775 -12.58667 -12.42650 -12.28146 -12.03995 -11.96977 -11.90458 -11.87677 -11.75068 -11.73111 -11.43834 -11.41058 -11.13095 -10.86682 -10.71903 -10.58826 -10.54526 -9.57970 -8.68719 -7.89533 -5.35802 1.42994 1.45360 1.52605 1.64608 1.99500 2.48490 2.87729 3.23595 3.54764 3.59835 3.79210 3.86184 3.96408 3.98499 4.12386 4.14890 4.22137 4.25425 4.29426 4.39954 4.42373 4.47174 4.48899 4.52162 4.56247 4.59859 4.61293 4.65133 4.70991 4.79355 4.84490 4.85668 4.87941 4.93651 4.95724 5.04859 5.08606 5.10769 5.11398 5.20061 5.25184 5.25905 5.36099 5.41505 5.45826 5.53597 5.58348 5.59883 5.65914 5.77873 6.28510 6.36715 6.47891 7.12692 7.21498 7.84326 8.36131 9.16158 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.002387 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.424923 B =11728.047811 C =13206.594500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.428 6.428 3 C 0.064 3.936 4 C -0.105 4.105 5 C -0.121 4.121 6 C 0.500 3.500 7 O -0.598 6.598 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.129 4.129 11 C -0.113 4.113 12 C -0.078 4.078 13 H 0.056 0.944 14 C -0.081 4.081 15 H 0.065 0.935 16 C -0.094 4.094 17 C -0.132 4.132 18 C 0.175 3.825 19 N -0.610 5.610 20 C -0.265 4.265 21 H 0.061 0.939 22 C -0.053 4.053 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.274 1.274 28 C 0.151 3.849 29 C 0.116 3.884 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.052 0.948 49 H -0.011 1.011 50 H 0.051 0.949 51 H 0.250 0.750 52 H 0.040 0.960 53 H -0.005 1.005 54 H 0.070 0.930 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.916 13.422 3.458 32.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.348 6.348 3 C -0.012 4.012 4 C -0.143 4.143 5 C -0.160 4.160 6 C 0.290 3.710 7 O -0.479 6.479 8 N -0.342 5.342 9 C -0.022 4.022 10 C -0.167 4.167 11 C -0.150 4.150 12 C -0.098 4.098 13 H 0.075 0.925 14 C -0.102 4.102 15 H 0.084 0.916 16 C -0.132 4.132 17 C -0.171 4.171 18 C 0.049 3.951 19 N -0.333 5.333 20 C -0.395 4.395 21 H 0.079 0.921 22 C -0.248 4.248 23 N -0.582 5.582 24 Si 0.796 3.204 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.200 1.200 28 C 0.026 3.974 29 C -0.007 4.007 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.007 0.993 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.058 0.942 53 H 0.013 0.987 54 H 0.088 0.912 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.402 12.633 3.398 31.270 hybrid contribution 1.356 -1.090 0.266 1.760 sum -27.046 11.543 3.665 29.634 Atomic orbital electron populations 1.22919 0.79294 1.03627 1.01158 1.87863 1.21725 1.29531 1.95691 1.22591 0.92187 0.84342 1.02042 1.21184 0.94044 0.96587 1.02504 1.21574 0.88359 0.98775 1.07335 1.21500 0.91381 0.83241 0.74886 1.90729 1.76280 1.28726 1.52144 1.48308 1.06104 1.07441 1.72357 1.22156 0.99402 0.80669 0.99990 1.21927 0.94730 1.01766 0.98307 1.21629 0.96196 0.94031 1.03171 1.21426 0.93482 0.97562 0.97367 0.92542 1.21450 0.93798 0.95727 0.99207 0.91617 1.21433 0.94429 1.00183 0.97128 1.22027 0.96895 0.97154 1.01026 1.20623 0.97086 0.88498 0.88887 1.44327 1.00694 1.51001 1.37321 1.19450 0.98346 1.27798 0.93892 0.92115 1.25849 1.01516 0.99857 0.97622 1.70193 1.20501 1.51684 1.15772 0.85322 0.78108 0.78305 0.78618 1.20441 1.21695 1.20010 1.21059 0.83858 0.95596 0.96930 1.21610 0.79940 1.00445 0.98679 0.92723 0.92811 0.89251 0.91070 0.91230 0.93112 0.92892 0.85316 0.85544 0.86488 0.89772 0.91956 0.87571 0.90485 0.91040 0.93520 0.89332 0.91203 0.92914 0.99332 0.93068 0.94063 0.94183 0.98669 0.91201 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.43 -8.26 10.70 -148.98 -1.59 -9.85 16 3 C 0.06 0.87 5.94 71.98 0.43 1.30 16 4 C -0.10 -2.01 4.87 30.59 0.15 -1.86 16 5 C -0.12 -1.65 4.05 29.85 0.12 -1.53 16 6 C 0.50 12.59 7.70 87.66 0.67 13.27 16 7 O -0.60 -22.50 15.39 -3.03 -0.05 -22.54 16 8 N -0.61 -13.21 2.97 -818.13 -2.43 -15.64 16 9 C 0.10 1.07 6.34 86.36 0.55 1.62 16 10 C -0.13 -1.42 6.08 30.67 0.19 -1.23 16 11 C -0.11 -1.93 4.85 30.62 0.15 -1.78 16 12 C -0.08 -2.05 1.94 -10.58 -0.02 -2.07 16 13 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 14 C -0.08 -2.72 1.92 -10.71 -0.02 -2.74 16 15 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 16 C -0.09 -2.97 4.85 30.62 0.15 -2.82 16 17 C -0.13 -5.01 6.08 30.67 0.19 -4.82 16 18 C 0.17 8.89 5.30 86.36 0.46 9.35 16 19 N -0.61 -32.88 2.99 -699.08 -2.09 -34.97 16 20 C -0.26 -15.56 9.58 84.03 0.81 -14.76 16 21 H 0.06 3.52 7.88 -2.91 -0.02 3.50 16 22 C -0.05 -3.14 4.92 84.86 0.42 -2.72 16 23 N -0.94 -58.14 11.20 21.65 0.24 -57.89 16 24 Si 0.97 47.14 29.59 68.60 2.03 49.17 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 27 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 28 C 0.15 6.88 5.29 86.36 0.46 7.34 16 29 C 0.12 3.30 5.23 86.50 0.45 3.75 16 30 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 1.24 8.10 -2.38 -0.02 1.23 16 36 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 37 H 0.13 0.89 7.94 -2.38 -0.02 0.88 16 38 H 0.13 0.95 7.69 -2.39 -0.02 0.93 16 39 H 0.12 0.48 5.93 -2.39 -0.01 0.47 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.08 1.25 6.34 -2.38 -0.02 1.24 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 2.13 6.34 -2.38 -0.02 2.11 16 47 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 48 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 49 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 50 H 0.05 2.93 6.06 -2.39 -0.01 2.91 16 51 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 52 H 0.04 1.88 6.69 -2.39 -0.02 1.86 16 53 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 54 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 55 H 0.05 2.03 5.77 -2.39 -0.01 2.01 16 Total: -1.00 -81.80 413.68 3.33 -78.47 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.83 Total: 11.43 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.39 Total: 1.82 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -4.28 Total: -108.50 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.64 Total: -32.40 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -81.80 3.33 -78.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700199845.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.980 kcal (2) G-P(sol) polarization free energy of solvation -81.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds