Wall clock time and date at job start Tue Mar 31 2020 22:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00063 * 2 1 4 4 C 1.52996 * 109.47376 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47540 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47411 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00043 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00127 * 179.97438 * 6 5 4 9 9 C 1.46924 * 120.63226 * 359.71460 * 8 6 5 10 10 C 1.52758 * 109.01506 * 233.58874 * 9 8 6 11 11 C 1.53047 * 109.37922 * 305.58915 * 10 9 8 12 12 C 1.53039 * 109.53918 * 61.23882 * 11 10 9 13 13 H 1.09005 * 109.49450 * 58.58293 * 12 11 10 14 14 C 1.52993 * 109.49753 * 178.68091 * 12 11 10 15 15 H 1.09002 * 109.49708 * 59.90396 * 14 12 11 16 16 C 1.53039 * 109.49753 * 180.02562 * 14 12 11 17 17 C 1.53047 * 109.53918 * 181.31909 * 16 14 12 18 18 C 1.53195 * 109.30945 * 298.63275 * 17 16 14 19 19 N 1.46929 * 108.77574 * 54.63683 * 18 17 16 20 20 C 1.36929 * 120.63013 * 126.40804 * 19 18 17 21 21 H 1.08005 * 120.00154 * 207.66288 * 20 19 18 22 22 C 1.38809 * 120.00196 * 27.66577 * 20 19 18 23 23 N 1.31621 * 119.99984 * 17.36547 * 22 20 19 24 24 Si 1.86807 * 120.00298 * 197.36594 * 22 20 19 25 25 H 1.48489 * 109.47001 * 89.99863 * 24 22 20 26 26 H 1.48500 * 109.47043 * 210.00378 * 24 22 20 27 27 H 1.48502 * 109.46934 * 329.99520 * 24 22 20 28 28 C 1.46930 * 118.73730 * 306.39063 * 19 18 17 29 29 C 1.46930 * 120.63131 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47333 * 59.99891 * 1 2 3 31 31 H 1.09001 * 109.46754 * 300.00226 * 1 2 3 32 32 H 1.08995 * 109.46900 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46986 * 300.00274 * 3 2 1 34 34 H 1.08999 * 109.47571 * 59.99845 * 3 2 1 35 35 H 1.09006 * 109.46974 * 299.99898 * 4 3 2 36 36 H 1.08998 * 109.47682 * 59.99483 * 4 3 2 37 37 H 1.09006 * 109.46889 * 299.99932 * 5 4 3 38 38 H 1.09000 * 109.47208 * 59.99856 * 5 4 3 39 39 H 1.09005 * 109.58548 * 353.42521 * 9 8 6 40 40 H 1.09002 * 109.58421 * 113.84214 * 9 8 6 41 41 H 1.08999 * 109.56717 * 185.55141 * 10 9 8 42 42 H 1.09000 * 109.35811 * 65.49375 * 10 9 8 43 43 H 1.08999 * 109.45661 * 301.21770 * 11 10 9 44 44 H 1.09000 * 109.44780 * 181.25184 * 11 10 9 45 45 H 1.08999 * 109.46173 * 301.33836 * 16 14 12 46 46 H 1.08999 * 109.46178 * 61.30113 * 16 14 12 47 47 H 1.09000 * 109.49495 * 178.68237 * 17 16 14 48 48 H 1.08996 * 109.52117 * 58.60073 * 17 16 14 49 49 H 1.08991 * 109.58964 * 294.84792 * 18 17 16 50 50 H 1.09005 * 109.58393 * 174.42115 * 18 17 16 51 51 H 0.97001 * 120.00441 * 180.02562 * 23 22 20 52 52 H 1.08998 * 109.58076 * 293.82158 * 28 19 18 53 53 H 1.08999 * 109.69985 * 173.46814 * 28 19 18 54 54 H 1.08998 * 109.58076 * 246.15220 * 29 8 6 55 55 H 1.08994 * 109.58338 * 6.43620 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6601 2.4634 0.0000 7 8 6.1817 1.3685 -0.0009 8 7 6.4240 3.5737 0.0000 9 6 5.8069 4.9070 -0.0063 10 6 6.3806 5.7155 -1.1685 11 6 7.9079 5.7299 -1.0721 12 6 8.4404 4.2983 -1.1679 13 1 8.1201 3.8534 -2.1101 14 6 9.9689 4.3167 -1.1045 15 1 10.2885 4.7619 -0.1623 16 6 10.5013 2.8851 -1.2010 17 6 12.0287 2.8995 -1.1046 18 6 12.6024 3.7085 -2.2722 19 7 11.9851 5.0419 -2.2721 20 6 12.7613 6.1699 -2.2725 21 1 12.3851 7.0845 -1.8383 22 6 14.0316 6.1382 -2.8311 23 7 14.3665 5.1633 -3.6496 24 14 15.2661 7.4790 -2.4212 25 1 16.0519 7.0797 -1.2262 26 1 16.1824 7.6771 -3.5728 27 1 14.5450 8.7461 -2.1388 28 6 10.5192 5.1417 -2.2720 29 6 7.8900 3.4738 -0.0006 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 3.8575 0.6436 0.8892 36 1 3.8568 0.6439 -0.8908 37 1 3.8358 3.1238 -0.8896 38 1 3.8365 3.1227 0.8904 39 1 4.7280 4.8097 -0.1280 40 1 6.0263 5.4156 0.9325 41 1 6.0035 6.7372 -1.1237 42 1 6.0798 5.2572 -2.1107 43 1 8.2074 6.1657 -0.1190 44 1 8.3175 6.3251 -1.8883 45 1 10.0916 2.2895 -0.3852 46 1 10.2018 2.4498 -2.1543 47 1 12.4057 1.8778 -1.1499 48 1 12.3298 3.3570 -0.1622 49 1 12.3795 3.2027 -3.2116 50 1 13.6817 3.8055 -2.1541 51 1 15.2543 5.1409 -4.0397 52 1 10.1265 4.7527 -3.2115 53 1 10.2220 6.1839 -2.1553 54 1 8.2830 3.8630 0.9387 55 1 8.1850 2.4309 -0.1160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700199846.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:12 Heat of formation + Delta-G solvation = -105.091437 kcal Electronic energy + Delta-G solvation = -30412.954820 eV Core-core repulsion = 26448.580027 eV Total energy + Delta-G solvation = -3964.374792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40150 -39.84256 -38.85250 -38.06688 -35.56276 -34.65516 -33.88926 -32.72632 -32.20568 -30.09336 -28.66864 -27.38423 -26.84728 -25.83074 -24.72054 -23.71012 -22.72144 -22.63548 -21.15213 -20.66605 -19.77995 -18.69703 -18.14658 -17.39482 -17.31571 -16.86674 -16.66733 -16.39866 -15.89287 -15.76338 -15.60026 -15.25481 -15.16589 -14.88744 -14.72305 -14.54786 -14.39038 -14.12113 -13.85501 -13.82616 -13.56188 -13.19398 -12.99721 -12.97269 -12.85687 -12.63512 -12.60634 -12.41943 -12.23440 -11.97972 -11.94212 -11.90053 -11.86072 -11.80976 -11.65097 -11.59472 -11.45905 -11.09348 -10.80563 -10.71768 -10.58344 -10.53502 -9.59052 -8.67967 -7.86571 -5.32447 1.46160 1.48109 1.56693 1.65001 2.00141 2.51206 2.88061 3.27256 3.54695 3.61810 3.78004 3.88266 3.95099 4.00055 4.12305 4.15476 4.17329 4.23394 4.28466 4.38415 4.41850 4.48648 4.50457 4.53761 4.57025 4.60323 4.63213 4.66646 4.72194 4.75689 4.84349 4.88540 4.89159 4.91959 4.93342 5.02198 5.06138 5.07914 5.12957 5.18549 5.25507 5.26846 5.33210 5.40233 5.44040 5.52479 5.58372 5.59492 5.67051 5.76118 6.28536 6.38921 6.47834 7.14444 7.20783 7.86590 8.39387 9.19682 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.002008 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.674551 B =13941.300664 C =14549.316896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.063 3.937 4 C -0.103 4.103 5 C -0.125 4.125 6 C 0.504 3.496 7 O -0.593 6.593 8 N -0.610 5.610 9 C 0.102 3.898 10 C -0.130 4.130 11 C -0.117 4.117 12 C -0.079 4.079 13 H 0.056 0.944 14 C -0.081 4.081 15 H 0.066 0.934 16 C -0.100 4.100 17 C -0.132 4.132 18 C 0.176 3.824 19 N -0.610 5.610 20 C -0.260 4.260 21 H 0.070 0.930 22 C -0.054 4.054 23 N -0.938 5.938 24 Si 0.968 3.032 25 H -0.286 1.286 26 H -0.296 1.296 27 H -0.265 1.265 28 C 0.156 3.844 29 C 0.120 3.880 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.052 0.948 49 H -0.011 1.011 50 H 0.052 0.948 51 H 0.249 0.751 52 H 0.001 0.999 53 H 0.059 0.941 54 H 0.073 0.927 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.129 -0.780 10.243 30.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.013 4.013 4 C -0.141 4.141 5 C -0.164 4.164 6 C 0.294 3.706 7 O -0.474 6.474 8 N -0.342 5.342 9 C -0.019 4.019 10 C -0.168 4.168 11 C -0.155 4.155 12 C -0.099 4.099 13 H 0.074 0.926 14 C -0.102 4.102 15 H 0.084 0.916 16 C -0.138 4.138 17 C -0.171 4.171 18 C 0.050 3.950 19 N -0.333 5.333 20 C -0.391 4.391 21 H 0.087 0.913 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.796 3.204 25 H -0.213 1.213 26 H -0.223 1.223 27 H -0.190 1.190 28 C 0.030 3.970 29 C -0.003 4.003 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.135 0.865 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.007 0.993 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.019 0.981 53 H 0.077 0.923 54 H 0.091 0.909 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.625 -1.495 10.159 30.411 hybrid contribution 1.398 0.401 -0.454 1.524 sum -27.227 -1.094 9.705 28.926 Atomic orbital electron populations 1.22915 0.79345 1.03640 1.01105 1.87854 1.21660 1.29482 1.95683 1.22602 0.92448 0.84341 1.01931 1.21168 0.93795 0.96481 1.02671 1.21588 0.88734 0.98864 1.07203 1.21378 0.91185 0.83193 0.74811 1.90700 1.76176 1.28392 1.52168 1.48294 1.06330 1.07263 1.72350 1.22008 0.99356 0.80885 0.99679 1.21843 0.94498 1.01763 0.98659 1.21620 0.96408 0.94861 1.02617 1.21325 0.93565 0.97046 0.97961 0.92552 1.21451 0.93748 0.95720 0.99281 0.91561 1.21449 0.94890 0.96672 1.00764 1.22025 0.96500 0.99299 0.99264 1.20580 0.97224 0.84252 0.92921 1.44322 1.01023 1.02034 1.85918 1.19551 0.97470 0.91495 1.30538 0.91266 1.25827 1.01516 1.00458 0.97095 1.70212 1.20067 1.36066 1.32063 0.85251 0.78936 0.79427 0.76764 1.21321 1.22307 1.18978 1.21032 0.83338 0.98078 0.94514 1.21535 0.79701 1.00783 0.98272 0.92922 0.92771 0.89177 0.91468 0.91166 0.92572 0.92937 0.85880 0.85428 0.86467 0.89707 0.88081 0.92053 0.91162 0.92147 0.91366 0.93808 0.91927 0.92875 0.99270 0.92972 0.94212 0.98080 0.92261 0.90898 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.58 10.70 -148.98 -1.59 -9.18 16 3 C 0.06 0.77 5.94 71.98 0.43 1.20 16 4 C -0.10 -1.74 4.87 30.59 0.15 -1.59 16 5 C -0.12 -1.48 4.05 29.85 0.12 -1.36 16 6 C 0.50 11.19 7.70 87.66 0.67 11.86 16 7 O -0.59 -19.49 15.39 -3.03 -0.05 -19.53 16 8 N -0.61 -11.91 2.98 -819.82 -2.44 -14.35 16 9 C 0.10 1.11 6.31 86.22 0.54 1.65 16 10 C -0.13 -1.73 6.07 30.53 0.19 -1.55 16 11 C -0.12 -2.44 4.86 30.62 0.15 -2.29 16 12 C -0.08 -2.06 1.92 -10.73 -0.02 -2.08 16 13 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 14 C -0.08 -2.72 1.92 -10.72 -0.02 -2.74 16 15 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 16 C -0.10 -3.52 4.86 30.62 0.15 -3.37 16 17 C -0.13 -5.30 6.08 30.68 0.19 -5.12 16 18 C 0.18 8.97 5.31 86.36 0.46 9.43 16 19 N -0.61 -31.46 2.99 -699.09 -2.09 -33.55 16 20 C -0.26 -14.51 9.59 84.03 0.81 -13.71 16 21 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 22 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16 23 N -0.94 -57.00 11.19 21.65 0.24 -56.76 16 24 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 C 0.16 6.50 5.28 86.36 0.46 6.95 16 29 C 0.12 2.95 5.19 86.35 0.45 3.40 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 1.18 8.10 -2.38 -0.02 1.17 16 36 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 37 H 0.12 0.82 7.68 -2.38 -0.02 0.80 16 38 H 0.13 0.71 7.95 -2.39 -0.02 0.69 16 39 H 0.12 0.49 5.94 -2.38 -0.01 0.48 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 1.44 6.49 -2.39 -0.02 1.42 16 45 H 0.07 2.13 6.50 -2.39 -0.02 2.12 16 46 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 49 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 50 H 0.05 2.98 6.04 -2.38 -0.01 2.97 16 51 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 52 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 53 H 0.06 2.37 6.52 -2.39 -0.02 2.35 16 54 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 55 H 0.07 2.08 5.60 -2.39 -0.01 2.07 16 Total: -1.00 -76.40 413.56 3.30 -73.09 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.83 Total: 13.32 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.38 Total: -0.45 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.29 Total: -104.66 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.64 Total: -28.71 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -76.40 3.30 -73.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700199846.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.998 kcal (2) G-P(sol) polarization free energy of solvation -76.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds