Wall clock time and date at job start Tue Mar 31 2020 22:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00108 * 2 1 4 4 C 1.53002 * 109.47238 * 179.97438 * 3 2 1 5 5 C 1.50701 * 110.43705 * 300.70676 * 4 3 2 6 6 O 1.21283 * 119.99537 * 237.45685 * 5 4 3 7 7 N 1.34769 * 120.00294 * 57.45064 * 5 4 3 8 8 C 1.46500 * 120.00287 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47232 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.45119 * 294.94588 * 9 8 7 11 11 C 1.54868 * 109.44713 * 174.99868 * 9 8 7 12 12 C 1.47094 * 110.31969 * 168.69515 * 11 9 8 13 13 C 1.52566 * 114.20838 * 62.88643 * 12 11 9 14 14 C 1.51035 * 109.27487 * 274.77369 * 13 12 11 15 15 C 1.53952 * 109.96645 * 92.06792 * 14 13 12 16 16 N 1.44574 * 109.45094 * 54.87509 * 9 8 7 17 17 C 1.36940 * 118.64231 * 30.78249 * 16 9 8 18 18 H 1.07998 * 120.00041 * 27.44865 * 17 16 9 19 19 C 1.38818 * 119.99966 * 207.44734 * 17 16 9 20 20 N 1.31623 * 119.99809 * 14.76088 * 19 17 16 21 21 Si 1.86795 * 120.00190 * 194.76300 * 19 17 16 22 22 H 1.48501 * 109.47169 * 59.99551 * 21 19 17 23 23 H 1.48500 * 109.47644 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47273 * 300.00005 * 21 19 17 25 25 C 1.54894 * 110.59776 * 63.32008 * 4 3 2 26 26 C 1.54887 * 102.75100 * 156.67601 * 25 4 3 27 27 C 1.54265 * 104.19372 * 322.06104 * 26 25 4 28 28 C 1.53876 * 106.60131 * 23.60819 * 27 26 25 29 29 H 1.09001 * 109.46842 * 59.99831 * 1 2 3 30 30 H 1.08995 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47174 * 300.00419 * 1 2 3 32 32 H 1.09003 * 109.47161 * 59.99792 * 3 2 1 33 33 H 1.08997 * 109.47389 * 299.99568 * 3 2 1 34 34 H 0.97001 * 120.00411 * 0.02562 * 7 5 4 35 35 H 1.09005 * 109.46961 * 60.00156 * 8 7 5 36 36 H 1.08996 * 109.47310 * 300.00390 * 8 7 5 37 37 H 1.08997 * 109.33040 * 48.43824 * 11 9 8 38 38 H 1.08996 * 109.18858 * 288.86928 * 11 9 8 39 39 H 1.09000 * 108.51232 * 184.05763 * 12 11 9 40 40 H 1.08995 * 108.51430 * 301.70682 * 12 11 9 41 41 H 1.08994 * 109.48985 * 34.87131 * 13 12 11 42 42 H 1.08998 * 109.49217 * 154.94490 * 13 12 11 43 43 H 1.08992 * 109.44841 * 331.90896 * 14 13 12 44 44 H 1.09000 * 109.31765 * 212.14399 * 14 13 12 45 45 H 1.08999 * 108.94649 * 198.73139 * 15 14 13 46 46 H 1.09003 * 108.87623 * 80.05548 * 15 14 13 47 47 H 0.96997 * 119.99797 * 180.02562 * 20 19 17 48 48 H 1.08998 * 110.75356 * 274.99525 * 25 4 3 49 49 H 1.09007 * 110.75522 * 38.35809 * 25 4 3 50 50 H 1.08995 * 110.48736 * 203.37959 * 26 25 4 51 51 H 1.08999 * 110.48341 * 80.73612 * 26 25 4 52 52 H 1.09006 * 110.02844 * 264.32427 * 27 26 25 53 53 H 1.08999 * 110.03319 * 142.89588 * 27 26 25 54 54 H 1.09000 * 110.03255 * 240.71691 * 28 27 26 55 55 H 1.08994 * 110.07359 * 119.30907 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0026 0.4244 1.2151 6 8 4.7863 0.9362 1.9864 7 7 3.5495 -0.8239 1.4443 8 6 4.0031 -1.5627 2.6252 9 6 3.3435 -2.9430 2.6478 10 1 2.2672 -2.8289 2.7758 11 6 3.9180 -3.7698 3.8246 12 6 3.1176 -4.9862 4.0330 13 6 3.1285 -5.9522 2.8521 14 6 2.0666 -5.5396 1.8606 15 6 2.6708 -4.5951 0.8056 16 7 3.6100 -3.6244 1.4009 17 6 4.7824 -3.3585 0.7451 18 1 5.6517 -3.0393 1.3009 19 6 4.8536 -3.4993 -0.6341 20 7 3.7493 -3.6008 -1.3431 21 14 6.5166 -3.5450 -1.4837 22 1 7.3063 -4.6905 -0.9648 23 1 6.3206 -3.7019 -2.9473 24 1 7.2450 -2.2792 -1.2143 25 6 4.0278 0.4924 -1.2946 26 6 5.4904 0.9883 -1.4125 27 6 5.4308 2.4569 -0.9442 28 6 4.1878 2.5818 -0.0457 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 2.9229 -1.2334 0.8273 35 1 3.7278 -1.0132 3.5255 36 1 5.0863 -1.6786 2.5874 37 1 3.9002 -3.1664 4.7321 38 1 4.9468 -4.0494 3.5974 39 1 3.5018 -5.5073 4.9099 40 1 2.0867 -4.6925 4.2304 41 1 4.1068 -5.9287 2.3721 42 1 2.9209 -6.9619 3.2063 43 1 1.2601 -5.0271 2.3849 44 1 1.6702 -6.4268 1.3667 45 1 1.8642 -4.0514 0.3140 46 1 3.2009 -5.1902 0.0619 47 1 3.7991 -3.6996 -2.3068 48 1 3.9949 -0.5920 -1.1894 49 1 3.4396 0.8163 -2.1533 50 1 5.8305 0.9311 -2.4465 51 1 6.1439 0.4068 -0.7622 52 1 5.3376 3.1197 -1.8046 53 1 6.3279 2.7047 -0.3769 54 1 3.4915 3.3050 -0.4701 55 1 4.4810 2.8904 0.9577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700524076.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:58 Heat of formation + Delta-G solvation = -92.309249 kcal Electronic energy + Delta-G solvation = -33685.005373 eV Core-core repulsion = 29721.184858 eV Total energy + Delta-G solvation = -3963.820515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44221 -39.81770 -38.61676 -37.68906 -35.88137 -35.13915 -33.23121 -32.42451 -31.69365 -29.64401 -28.52534 -27.53675 -27.15661 -25.24777 -25.13708 -24.10088 -22.58442 -21.37164 -21.22334 -20.75351 -20.02152 -18.26676 -17.69413 -17.29267 -17.11435 -16.89262 -16.52585 -16.33411 -16.13667 -15.92337 -15.60423 -15.35349 -15.17441 -14.86601 -14.65694 -14.38658 -14.09733 -13.96691 -13.63779 -13.37376 -13.24956 -13.10451 -12.86289 -12.78380 -12.69478 -12.42011 -12.38401 -12.30211 -12.17934 -11.97391 -11.96794 -11.93290 -11.61562 -11.51034 -11.39249 -11.33607 -11.29483 -11.18243 -10.98218 -10.62673 -10.39979 -10.27754 -9.61445 -8.47740 -7.72025 -5.13893 1.41263 1.44535 1.48523 1.85930 2.52661 2.58740 2.87906 3.42178 3.60023 3.64836 3.67577 3.89061 4.05944 4.11241 4.15496 4.25167 4.28568 4.30823 4.45073 4.51186 4.54382 4.57499 4.58491 4.59865 4.64155 4.65096 4.69023 4.76679 4.81705 4.85218 4.94912 5.02119 5.02422 5.05359 5.09656 5.12790 5.15521 5.26749 5.28399 5.30424 5.39180 5.41012 5.44775 5.49335 5.57531 5.69968 5.76542 5.82098 5.91123 5.96791 6.31304 6.53099 7.01369 7.33833 7.60053 8.07256 8.45866 9.30909 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010587 B = 0.005524 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.121877 B = 5067.894698 C = 5931.699096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.408 6.408 3 C 0.081 3.919 4 C -0.080 4.080 5 C 0.516 3.484 6 O -0.603 6.603 7 N -0.678 5.678 8 C 0.130 3.870 9 C 0.177 3.823 10 H 0.051 0.949 11 C -0.128 4.128 12 C -0.099 4.099 13 C -0.102 4.102 14 C -0.132 4.132 15 C 0.192 3.808 16 N -0.583 5.583 17 C -0.234 4.234 18 H 0.040 0.960 19 C -0.014 4.014 20 N -0.906 5.906 21 Si 0.918 3.082 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.099 4.099 26 C -0.129 4.129 27 C -0.111 4.111 28 C -0.098 4.098 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.418 0.582 35 H 0.057 0.943 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.001 0.999 46 H 0.040 0.960 47 H 0.245 0.755 48 H 0.053 0.947 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.025 0.975 52 H 0.093 0.907 53 H 0.055 0.945 54 H 0.102 0.898 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 7.396 2.932 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.327 6.327 3 C 0.004 3.996 4 C -0.083 4.083 5 C 0.303 3.697 6 O -0.486 6.486 7 N -0.328 5.328 8 C 0.005 3.995 9 C 0.069 3.931 10 H 0.069 0.931 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.140 4.140 14 C -0.171 4.171 15 C 0.067 3.933 16 N -0.306 5.306 17 C -0.365 4.365 18 H 0.058 0.942 19 C -0.211 4.211 20 N -0.552 5.552 21 Si 0.750 3.250 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.137 4.137 26 C -0.167 4.167 27 C -0.148 4.148 28 C -0.136 4.136 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.258 0.742 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.019 0.981 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.110 0.890 50 H 0.094 0.906 51 H 0.044 0.956 52 H 0.112 0.888 53 H 0.073 0.927 54 H 0.121 0.879 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.647 7.514 3.289 11.214 hybrid contribution 1.050 -0.441 -0.962 1.491 sum -6.596 7.074 2.327 9.948 Atomic orbital electron populations 1.22820 0.79461 1.03140 1.00831 1.87883 1.21439 1.27923 1.95466 1.22530 0.89877 0.85237 1.01926 1.21702 0.95743 0.97294 0.93539 1.20659 0.80203 0.82229 0.86607 1.90549 1.37578 1.70237 1.50283 1.45879 1.46162 1.14042 1.26729 1.21413 0.98139 0.92676 0.87271 1.20605 0.96517 0.88799 0.87216 0.93074 1.21296 0.99569 0.97705 0.98321 1.20264 1.00200 0.95518 0.97655 1.20928 0.98933 0.98139 0.96018 1.21973 0.97983 0.99136 0.98003 1.20758 0.90868 0.89301 0.92328 1.43677 1.19814 1.45308 1.21759 1.18810 0.88900 1.40147 0.88627 0.94199 1.25102 0.96976 1.02256 0.96803 1.70114 1.25249 1.55023 1.04821 0.86120 0.83583 0.77298 0.77997 1.21783 1.21819 1.21948 1.22425 0.95687 1.00000 0.95562 1.22361 0.96552 0.96990 1.00786 1.22050 0.97752 0.95451 0.99583 1.22051 0.97208 0.93197 1.01139 0.92507 0.90017 0.93129 0.92438 0.89674 0.74207 0.92453 0.94758 0.91184 0.94100 0.91973 0.92061 0.93987 0.91825 0.92341 0.92066 0.98088 0.94161 0.94565 0.92810 0.88994 0.90632 0.95620 0.88813 0.92655 0.87916 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.41 -12.82 7.91 -148.98 -1.18 -14.00 16 3 C 0.08 2.17 4.71 71.98 0.34 2.51 16 4 C -0.08 -2.61 0.62 -51.85 -0.03 -2.64 16 5 C 0.52 21.41 6.30 87.66 0.55 21.97 16 6 O -0.60 -28.11 15.44 -3.04 -0.05 -28.16 16 7 N -0.68 -28.73 4.23 -463.07 -1.96 -30.69 16 8 C 0.13 5.39 4.53 86.38 0.39 5.78 16 9 C 0.18 6.84 2.19 45.99 0.10 6.94 16 10 H 0.05 1.92 8.06 -2.39 -0.02 1.90 16 11 C -0.13 -4.30 5.06 29.40 0.15 -4.15 16 12 C -0.10 -2.89 5.16 28.61 0.15 -2.75 16 13 C -0.10 -3.33 5.51 29.81 0.16 -3.17 16 14 C -0.13 -4.53 5.72 30.28 0.17 -4.36 16 15 C 0.19 8.50 4.66 86.49 0.40 8.90 16 16 N -0.58 -26.19 1.77 -674.24 -1.19 -27.38 16 17 C -0.23 -12.05 7.65 84.03 0.64 -11.41 16 18 H 0.04 2.21 6.71 -2.91 -0.02 2.19 16 19 C -0.01 -0.76 4.89 84.86 0.41 -0.34 16 20 N -0.91 -48.79 11.02 21.65 0.24 -48.55 16 21 Si 0.92 45.23 29.58 68.60 2.03 47.26 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 23 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 25 C -0.10 -3.49 5.59 31.89 0.18 -3.31 16 26 C -0.13 -4.45 6.61 31.67 0.21 -4.24 16 27 C -0.11 -3.05 6.80 31.32 0.21 -2.84 16 28 C -0.10 -2.70 5.73 31.32 0.18 -2.52 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.42 18.59 5.80 -92.71 -0.54 18.05 16 35 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.03 1.61 6.83 -2.39 -0.02 1.59 16 37 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.65 7.35 -2.39 -0.02 1.63 16 41 H 0.04 1.64 7.48 -2.39 -0.02 1.63 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.84 7.31 -2.39 -0.02 1.83 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.00 0.05 8.02 -2.39 -0.02 0.03 16 46 H 0.04 2.04 6.38 -2.39 -0.02 2.03 16 47 H 0.24 13.21 8.31 -92.71 -0.77 12.44 16 48 H 0.05 2.42 7.81 -2.39 -0.02 2.40 16 49 H 0.09 2.75 8.06 -2.38 -0.02 2.73 16 50 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 51 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 53 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 54 H 0.10 2.02 7.84 -2.39 -0.02 2.00 16 55 H 0.07 2.08 6.89 -2.39 -0.02 2.06 16 Total: -1.00 -62.66 408.93 3.67 -58.99 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.31 Total: 36.12 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.47 Total: 6.40 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -2.91 Total: -106.62 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -1.23 Total: -42.15 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -62.66 3.67 -58.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700524076.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.316 kcal (2) G-P(sol) polarization free energy of solvation -62.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds