Wall clock time and date at job start Tue Mar 31 2020 22:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00285 * 2 1 4 4 C 1.52993 * 109.47310 * 179.97438 * 3 2 1 5 5 C 1.50701 * 110.43562 * 300.70154 * 4 3 2 6 6 O 1.21277 * 120.00246 * 237.45443 * 5 4 3 7 7 N 1.34774 * 120.00024 * 57.46010 * 5 4 3 8 8 C 1.46495 * 120.00405 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47576 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.42296 * 64.93585 * 9 8 7 11 11 C 1.55415 * 109.71282 * 185.08239 * 9 8 7 12 12 C 1.47093 * 110.34791 * 191.30034 * 11 9 8 13 13 C 1.52568 * 114.32698 * 297.12247 * 12 11 9 14 14 C 1.50883 * 109.35490 * 85.01615 * 13 12 11 15 15 C 1.53939 * 110.09737 * 268.11600 * 14 13 12 16 16 N 1.44578 * 109.45122 * 305.00622 * 9 8 7 17 17 C 1.36932 * 118.64127 * 329.23199 * 16 9 8 18 18 H 1.08004 * 120.00387 * 357.68697 * 17 16 9 19 19 C 1.38811 * 120.00005 * 177.68271 * 17 16 9 20 20 N 1.31620 * 120.00213 * 324.36068 * 19 17 16 21 21 Si 1.86799 * 120.00097 * 144.35540 * 19 17 16 22 22 H 1.48504 * 109.47444 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47136 * 60.00325 * 21 19 17 24 24 H 1.48501 * 109.47465 * 300.00757 * 21 19 17 25 25 C 1.54894 * 110.59936 * 63.32003 * 4 3 2 26 26 C 1.54886 * 102.74767 * 156.67625 * 25 4 3 27 27 C 1.54266 * 104.19897 * 322.05586 * 26 25 4 28 28 C 1.53878 * 106.59663 * 23.61695 * 27 26 25 29 29 H 1.09004 * 109.47408 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47135 * 299.99904 * 1 2 3 31 31 H 1.08999 * 109.47415 * 59.99905 * 1 2 3 32 32 H 1.09004 * 109.46970 * 60.00150 * 3 2 1 33 33 H 1.09006 * 109.47063 * 300.00270 * 3 2 1 34 34 H 0.97006 * 119.99646 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47095 * 60.00031 * 8 7 5 36 36 H 1.08997 * 109.47337 * 300.00265 * 8 7 5 37 37 H 1.08998 * 109.37024 * 70.99032 * 11 9 8 38 38 H 1.09000 * 109.11793 * 311.44612 * 11 9 8 39 39 H 1.09003 * 108.51222 * 175.87201 * 12 11 9 40 40 H 1.08995 * 108.51328 * 58.37389 * 12 11 9 41 41 H 1.09003 * 109.48979 * 325.05529 * 13 12 11 42 42 H 1.08999 * 109.49508 * 204.98528 * 13 12 11 43 43 H 1.09001 * 109.36827 * 147.92138 * 14 13 12 44 44 H 1.09003 * 109.36341 * 28.30609 * 14 13 12 45 45 H 1.08998 * 108.94961 * 279.87174 * 15 14 13 46 46 H 1.09006 * 108.94783 * 161.24596 * 15 14 13 47 47 H 0.97000 * 119.99706 * 354.42950 * 20 19 17 48 48 H 1.08992 * 110.75309 * 274.99410 * 25 4 3 49 49 H 1.09003 * 110.74893 * 38.36340 * 25 4 3 50 50 H 1.09002 * 110.48356 * 203.37990 * 26 25 4 51 51 H 1.09004 * 110.48965 * 80.74147 * 26 25 4 52 52 H 1.08993 * 110.03618 * 264.32757 * 27 26 25 53 53 H 1.08998 * 110.02994 * 142.89120 * 27 26 25 54 54 H 1.09005 * 110.03008 * 240.71533 * 28 27 26 55 55 H 1.08995 * 110.03614 * 119.28132 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.0025 0.4245 1.2152 6 8 4.7862 0.9361 1.9864 7 7 3.5494 -0.8240 1.4443 8 6 4.0038 -1.5632 2.6247 9 6 3.3432 -2.9430 2.6481 10 1 3.6870 -3.5240 1.7923 11 6 3.7200 -3.6824 3.9621 12 6 3.3230 -5.0967 3.8850 13 6 1.8204 -5.3209 3.7454 14 6 1.4344 -5.2303 2.2896 15 6 1.0281 -3.7875 1.9389 16 7 1.9071 -2.7904 2.5807 17 6 1.3394 -1.6720 3.1301 18 1 1.9581 -0.9443 3.6343 19 6 -0.0314 -1.4733 3.0391 20 7 -0.6809 -1.8514 1.9586 21 14 -0.9544 -0.6693 4.4502 22 1 -2.3963 -0.5733 4.1077 23 1 -0.4096 0.6918 4.6863 24 1 -0.7913 -1.4877 5.6785 25 6 4.0278 0.4923 -1.2946 26 6 5.4904 0.9882 -1.4124 27 6 5.4308 2.4569 -0.9442 28 6 4.1878 2.5817 -0.0456 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 2.9223 -1.2331 0.8276 35 1 3.7292 -1.0140 3.5253 36 1 5.0869 -1.6791 2.5860 37 1 3.2105 -3.2098 4.8017 38 1 4.7978 -3.6179 4.1115 39 1 3.6659 -5.6021 4.7879 40 1 3.8216 -5.5499 3.0283 41 1 1.2848 -4.5590 4.3117 42 1 1.5627 -6.3080 4.1292 43 1 0.5960 -5.8993 2.0956 44 1 2.2819 -5.5275 1.6718 45 1 0.0026 -3.6189 2.2672 46 1 1.0774 -3.6588 0.8576 47 1 -0.1922 -2.1944 1.1941 48 1 3.9948 -0.5921 -1.1894 49 1 3.4396 0.8163 -2.1532 50 1 5.8304 0.9310 -2.4464 51 1 6.1440 0.4067 -0.7621 52 1 5.3376 3.1196 -1.8045 53 1 6.3279 2.7046 -0.3768 54 1 3.4914 3.3050 -0.4700 55 1 4.4817 2.8900 0.9576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700524077.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:02 Heat of formation + Delta-G solvation = -69.634430 kcal Electronic energy + Delta-G solvation = -33811.067768 eV Core-core repulsion = 29848.230507 eV Total energy + Delta-G solvation = -3962.837261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53329 -39.96823 -38.63625 -37.66554 -35.97197 -35.62101 -33.32884 -32.20718 -31.71706 -29.70612 -28.43333 -27.68604 -27.12060 -25.20540 -24.82623 -24.25093 -22.70467 -21.40452 -21.23508 -20.69203 -20.25547 -18.82429 -17.94228 -17.27224 -17.12523 -16.91414 -16.47897 -16.35568 -16.13300 -15.75667 -15.50400 -15.41081 -15.35017 -14.91371 -14.59150 -14.36533 -14.14394 -14.03212 -13.90853 -13.46656 -13.26492 -13.10525 -12.85389 -12.64515 -12.55857 -12.42553 -12.29495 -12.15798 -12.02824 -11.98065 -11.90827 -11.81354 -11.73705 -11.60399 -11.44862 -11.38836 -11.32421 -11.13571 -10.96622 -10.64331 -10.40645 -9.93006 -9.73372 -8.71903 -7.99313 -4.84055 1.58926 1.63518 1.75884 1.79716 2.46224 2.74294 2.86680 3.29570 3.55490 3.56770 3.63902 3.86408 3.98399 4.05745 4.07036 4.22695 4.26327 4.34126 4.36225 4.39523 4.49129 4.51518 4.52938 4.55792 4.58860 4.60387 4.73584 4.74954 4.81628 4.86334 4.92373 4.94949 4.99745 5.06340 5.09010 5.10515 5.16409 5.19972 5.26520 5.27050 5.29464 5.36344 5.38398 5.47624 5.48778 5.57830 5.65728 5.71697 5.78490 6.10329 6.35931 6.70117 6.87524 7.30591 7.47804 8.08510 8.39794 9.27455 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.005231 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.221251 B = 5351.509823 C = 6426.004162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 O -0.389 6.389 3 C 0.079 3.921 4 C -0.079 4.079 5 C 0.518 3.482 6 O -0.600 6.600 7 N -0.682 5.682 8 C 0.128 3.872 9 C 0.181 3.819 10 H 0.053 0.947 11 C -0.127 4.127 12 C -0.098 4.098 13 C -0.102 4.102 14 C -0.125 4.125 15 C 0.139 3.861 16 N -0.590 5.590 17 C -0.313 4.313 18 H 0.042 0.958 19 C -0.047 4.047 20 N -0.919 5.919 21 Si 1.057 2.943 22 H -0.294 1.294 23 H -0.306 1.306 24 H -0.300 1.300 25 C -0.095 4.095 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.105 4.105 29 H 0.091 0.909 30 H 0.017 0.983 31 H 0.042 0.958 32 H 0.024 0.976 33 H 0.083 0.917 34 H 0.413 0.587 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.076 0.924 46 H -0.005 1.005 47 H 0.273 0.727 48 H 0.059 0.941 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.043 0.957 52 H 0.091 0.909 53 H 0.057 0.943 54 H 0.091 0.909 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 0.386 -8.547 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 O -0.308 6.308 3 C 0.001 3.999 4 C -0.082 4.082 5 C 0.305 3.695 6 O -0.483 6.483 7 N -0.332 5.332 8 C 0.003 3.997 9 C 0.073 3.927 10 H 0.071 0.929 11 C -0.167 4.167 12 C -0.136 4.136 13 C -0.140 4.140 14 C -0.164 4.164 15 C 0.014 3.986 16 N -0.313 5.313 17 C -0.442 4.442 18 H 0.060 0.940 19 C -0.245 4.245 20 N -0.566 5.566 21 Si 0.889 3.111 22 H -0.220 1.220 23 H -0.234 1.234 24 H -0.228 1.228 25 C -0.133 4.133 26 C -0.160 4.160 27 C -0.150 4.150 28 C -0.143 4.143 29 H 0.109 0.891 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.252 0.748 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.013 0.987 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.117 0.883 50 H 0.112 0.888 51 H 0.062 0.938 52 H 0.110 0.890 53 H 0.076 0.924 54 H 0.109 0.891 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.869 0.964 -7.468 10.192 hybrid contribution 0.661 -0.060 0.098 0.671 sum 7.530 0.904 -7.371 10.576 Atomic orbital electron populations 1.22783 0.79250 1.03585 0.97824 1.87712 1.20962 1.26900 1.95195 1.22464 0.91004 0.85968 1.00418 1.21717 0.94397 0.97649 0.94455 1.20700 0.80027 0.81772 0.86972 1.90566 1.38100 1.69358 1.50255 1.45852 1.45912 1.15124 1.26325 1.21443 0.96762 0.93351 0.88141 1.20608 0.83761 0.92254 0.96069 0.92943 1.21358 0.99962 0.96767 0.98659 1.20247 0.95638 0.95944 1.01727 1.20883 0.96493 1.00183 0.96450 1.21795 1.00701 0.97022 0.96835 1.21654 0.96552 0.87542 0.92864 1.43792 1.00477 1.20015 1.66997 1.19734 0.92844 1.00821 1.30850 0.94048 1.25457 0.94367 1.02812 1.01871 1.70892 1.39834 1.43728 1.02138 0.83581 0.75756 0.74868 0.76849 1.21982 1.23364 1.22801 1.22475 0.96672 0.99421 0.94732 1.22376 0.95625 0.95956 1.02030 1.22052 0.96783 0.97013 0.99178 1.22078 0.97822 0.93292 1.01073 0.89076 0.96468 0.93969 0.95737 0.89901 0.74757 0.94715 0.92336 0.94134 0.91355 0.92062 0.92074 0.94081 0.91835 0.91950 0.92344 0.90622 0.98715 0.91337 0.92222 0.88326 0.88808 0.93774 0.89021 0.92445 0.89092 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.33 9.67 113.37 1.10 3.43 16 2 O -0.39 -14.42 7.91 -148.98 -1.18 -15.59 16 3 C 0.08 2.51 4.71 71.98 0.34 2.85 16 4 C -0.08 -2.44 0.62 -51.85 -0.03 -2.47 16 5 C 0.52 20.52 6.30 87.66 0.55 21.07 16 6 O -0.60 -27.29 15.44 -3.02 -0.05 -27.34 16 7 N -0.68 -27.27 4.24 -463.07 -1.96 -29.23 16 8 C 0.13 5.14 4.48 86.38 0.39 5.53 16 9 C 0.18 6.82 2.21 46.18 0.10 6.92 16 10 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 11 C -0.13 -4.26 5.09 29.59 0.15 -4.11 16 12 C -0.10 -2.89 5.16 28.61 0.15 -2.75 16 13 C -0.10 -3.36 5.51 29.76 0.16 -3.20 16 14 C -0.12 -4.21 5.71 30.22 0.17 -4.03 16 15 C 0.14 5.83 4.49 86.48 0.39 6.21 16 16 N -0.59 -25.42 1.79 -673.17 -1.21 -26.63 16 17 C -0.31 -15.63 8.15 84.03 0.68 -14.94 16 18 H 0.04 2.29 5.98 -2.91 -0.02 2.27 16 19 C -0.05 -2.41 4.68 84.86 0.40 -2.01 16 20 N -0.92 -46.98 9.62 21.65 0.21 -46.77 16 21 Si 1.06 50.26 30.04 68.60 2.06 52.32 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.31 -14.68 7.11 99.48 0.71 -13.98 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 C -0.10 -2.38 5.59 31.89 0.18 -2.20 16 26 C -0.12 -2.73 6.61 31.67 0.21 -2.52 16 27 C -0.11 -2.46 6.80 31.32 0.21 -2.24 16 28 C -0.10 -2.80 5.73 31.32 0.18 -2.62 16 29 H 0.09 3.84 5.31 -2.38 -0.01 3.83 16 30 H 0.02 0.72 8.00 -2.39 -0.02 0.70 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.41 16.91 5.81 -92.70 -0.54 16.37 16 35 H 0.03 1.61 6.54 -2.39 -0.02 1.60 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 2.00 8.11 -2.39 -0.02 1.98 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.64 7.37 -2.39 -0.02 1.62 16 41 H 0.04 1.65 7.48 -2.39 -0.02 1.63 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.06 1.80 7.32 -2.39 -0.02 1.78 16 45 H 0.08 3.69 5.09 -2.39 -0.01 3.68 16 46 H -0.01 -0.22 7.68 -2.38 -0.02 -0.24 16 47 H 0.27 13.73 4.22 -92.71 -0.39 13.34 16 48 H 0.06 1.65 7.81 -2.39 -0.02 1.63 16 49 H 0.10 2.03 8.06 -2.39 -0.02 2.01 16 50 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 54 H 0.09 1.96 7.84 -2.38 -0.02 1.94 16 55 H 0.06 1.84 6.88 -2.39 -0.02 1.82 16 Total: -1.00 -58.56 397.13 3.90 -54.66 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: 0.70 Total: 35.67 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.33 Total: 2.91 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -2.96 Total: -102.63 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.23 Total: -42.93 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.06 Total: 52.32 kcal Total: -58.56 3.90 -54.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700524077.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.976 kcal (2) G-P(sol) polarization free energy of solvation -58.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds