Wall clock time and date at job start Tue Mar 31 2020 21:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47145 * 2 1 4 4 C 1.42897 * 113.99862 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47492 * 29.99805 * 4 3 2 6 6 C 1.50701 * 109.46814 * 269.99939 * 4 3 2 7 7 O 1.21277 * 119.99941 * 354.99691 * 6 4 3 8 8 N 1.34775 * 119.99910 * 175.00491 * 6 4 3 9 9 C 1.46504 * 119.99904 * 179.97438 * 8 6 4 10 10 H 1.09002 * 110.88589 * 34.29587 * 9 8 6 11 11 C 1.54909 * 111.00462 * 270.41314 * 9 8 6 12 12 N 1.47423 * 104.83351 * 278.90063 * 11 9 8 13 13 C 1.36936 * 125.64594 * 155.90840 * 12 11 9 14 14 H 1.08007 * 120.00033 * 179.97438 * 13 12 11 15 15 C 1.38813 * 120.00281 * 359.97114 * 13 12 11 16 16 N 1.31616 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99983 * 180.02562 * 15 13 12 18 18 H 1.48510 * 109.47129 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47513 * 119.99988 * 17 15 13 20 20 H 1.48502 * 109.47290 * 240.00176 * 17 15 13 21 21 C 1.47016 * 108.70440 * 335.86643 * 12 11 9 22 22 C 1.54383 * 107.28804 * 1.09781 * 21 12 11 23 23 C 1.52996 * 110.70268 * 263.79009 * 22 21 12 24 24 C 1.53000 * 110.75708 * 140.50279 * 22 21 12 25 25 C 1.52999 * 109.47204 * 150.00328 * 4 3 2 26 26 C 1.54269 * 110.03387 * 57.90064 * 25 4 3 27 27 C 1.54973 * 104.15974 * 217.13789 * 26 25 4 28 28 C 1.54886 * 102.77341 * 37.89031 * 27 26 25 29 29 C 1.53875 * 110.03149 * 300.68644 * 25 4 3 30 30 H 1.08997 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46778 * 299.99676 * 1 2 3 32 32 H 1.09001 * 109.47313 * 59.99996 * 1 2 3 33 33 H 1.09004 * 109.46778 * 240.00324 * 2 1 3 34 34 H 1.09001 * 109.47313 * 120.00004 * 2 1 3 35 35 H 0.96994 * 120.00442 * 359.97438 * 8 6 4 36 36 H 1.09000 * 110.36449 * 37.73705 * 11 9 8 37 37 H 1.09002 * 110.36579 * 159.94626 * 11 9 8 38 38 H 0.96996 * 120.00056 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.88531 * 120.47268 * 21 12 11 40 40 H 1.08996 * 109.88671 * 241.49081 * 21 12 11 41 41 H 1.09000 * 109.47322 * 173.48481 * 23 22 21 42 42 H 1.08995 * 109.47541 * 293.48947 * 23 22 21 43 43 H 1.09003 * 109.47122 * 53.48885 * 23 22 21 44 44 H 1.09001 * 109.47041 * 306.48734 * 24 22 21 45 45 H 1.09005 * 109.47043 * 66.48228 * 24 22 21 46 46 H 1.08994 * 109.46599 * 186.48184 * 24 22 21 47 47 H 1.08999 * 110.01899 * 179.29743 * 25 4 3 48 48 H 1.08993 * 110.48573 * 335.78817 * 26 25 4 49 49 H 1.08998 * 110.48279 * 98.43001 * 26 25 4 50 50 H 1.08995 * 110.71463 * 279.57540 * 27 26 25 51 51 H 1.08993 * 110.91762 * 156.29629 * 27 26 25 52 52 H 1.09007 * 110.48487 * 203.40420 * 28 27 26 53 53 H 1.08997 * 110.60271 * 80.81877 * 28 27 26 54 54 H 1.08997 * 110.03468 * 238.57190 * 29 25 4 55 55 H 1.09008 * 110.03021 * 359.94983 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8632 0.6017 -0.5147 6 6 3.9322 1.4995 1.4201 7 8 3.1434 1.5288 2.3408 8 7 5.2570 1.5025 1.6673 9 6 5.7444 1.5414 3.0484 10 1 5.0783 0.9889 3.7112 11 6 5.9240 3.0017 3.5329 12 7 7.2267 3.4232 2.9864 13 6 7.6098 4.7151 2.7432 14 1 8.5906 4.9208 2.3402 15 6 6.7378 5.7605 3.0144 16 7 5.5428 5.5100 3.5059 17 14 7.2602 7.5228 2.6819 18 1 8.6407 7.5350 2.1344 19 1 6.3320 8.1373 1.6990 20 1 7.2237 8.2974 3.9483 21 6 8.0468 2.2267 2.7469 22 6 7.1957 1.0006 3.1414 23 6 7.5172 0.5559 4.5696 24 6 7.4096 -0.1484 2.1540 25 6 3.8404 2.7458 -0.7217 26 6 3.1924 3.9660 -0.0354 27 6 2.8369 4.9157 -1.2074 28 6 2.3726 3.9358 -2.3134 29 6 3.3198 2.7267 -2.1696 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 5.8879 1.4788 0.9310 36 1 5.1262 3.6324 3.1405 37 1 5.9368 3.0412 4.6221 38 1 4.9333 6.2404 3.6951 39 1 8.3157 2.1665 1.6923 40 1 8.9488 2.2671 3.3576 41 1 6.8275 -0.2336 4.8683 42 1 8.5395 0.1805 4.6119 43 1 7.4134 1.4041 5.2463 44 1 7.2307 0.2067 1.1391 45 1 8.4339 -0.5122 2.2363 46 1 6.7169 -0.9580 2.3833 47 1 4.9256 2.8471 -0.7165 48 1 2.2915 3.6682 0.5008 49 1 3.9005 4.4433 0.6420 50 1 3.7149 5.4750 -1.5303 51 1 2.0302 5.5933 -0.9281 52 1 2.4825 4.3916 -3.2975 53 1 1.3389 3.6325 -2.1478 54 1 4.1523 2.8196 -2.8670 55 1 2.7761 1.8010 -2.3588 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700572602.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:59 Heat of formation + Delta-G solvation = -93.322747 kcal Electronic energy + Delta-G solvation = -32855.930310 eV Core-core repulsion = 28892.065846 eV Total energy + Delta-G solvation = -3963.864464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54664 -40.17896 -38.68011 -37.82023 -35.65194 -34.52416 -32.76161 -32.59117 -30.84907 -29.69929 -29.53511 -28.08793 -27.42529 -26.43791 -24.84941 -23.73684 -22.45139 -21.74251 -21.26473 -20.55830 -20.14231 -18.69292 -18.50592 -17.88065 -17.08935 -16.78415 -16.49627 -16.36663 -16.07430 -15.63099 -15.46832 -15.24605 -14.93217 -14.65257 -14.51303 -14.16277 -14.07851 -13.80109 -13.66445 -13.65025 -13.14931 -13.03632 -13.01723 -12.87055 -12.81641 -12.64692 -12.56445 -12.32533 -12.25830 -12.06776 -11.95259 -11.89968 -11.77892 -11.75363 -11.61078 -11.52191 -11.44135 -11.36291 -11.32281 -11.22555 -10.78099 -10.16034 -9.90109 -8.82754 -7.73648 -5.18649 1.43375 1.43791 1.54047 1.66266 2.20223 2.48671 2.74726 3.36104 3.54913 3.59576 3.68233 3.69938 3.78551 3.90510 3.97846 4.06287 4.08856 4.21711 4.30024 4.40542 4.42211 4.50653 4.53404 4.59498 4.63493 4.72076 4.74356 4.76511 4.83086 4.87287 4.88727 4.91732 4.92866 5.03955 5.05166 5.06717 5.10545 5.11458 5.20522 5.24866 5.28255 5.31239 5.33517 5.36581 5.47665 5.50181 5.52744 5.54012 5.71438 5.86245 6.16358 6.33042 6.68671 7.10667 7.37261 7.81134 8.44863 9.26254 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009201 B = 0.005113 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.509851 B = 5474.654832 C = 7467.739484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.367 6.367 4 C 0.092 3.908 5 H 0.119 0.881 6 C 0.486 3.514 7 O -0.579 6.579 8 N -0.691 5.691 9 C 0.137 3.863 10 H 0.073 0.927 11 C 0.156 3.844 12 N -0.615 5.615 13 C -0.230 4.230 14 H 0.084 0.916 15 C -0.063 4.063 16 N -0.944 5.944 17 Si 0.969 3.031 18 H -0.262 1.262 19 H -0.295 1.295 20 H -0.298 1.298 21 C 0.139 3.861 22 C -0.074 4.074 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.079 4.079 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.111 4.111 29 C -0.103 4.103 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.033 0.967 35 H 0.406 0.594 36 H 0.069 0.931 37 H -0.022 1.022 38 H 0.240 0.760 39 H 0.037 0.963 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.030 0.970 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.049 0.951 49 H 0.024 0.976 50 H 0.063 0.937 51 H 0.057 0.943 52 H 0.082 0.918 53 H 0.064 0.936 54 H 0.084 0.916 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -15.068 -13.738 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 O -0.285 6.285 4 C 0.031 3.969 5 H 0.137 0.863 6 C 0.273 3.727 7 O -0.459 6.459 8 N -0.343 5.343 9 C 0.030 3.970 10 H 0.091 0.909 11 C 0.030 3.970 12 N -0.341 5.341 13 C -0.359 4.359 14 H 0.102 0.898 15 C -0.255 4.255 16 N -0.594 5.594 17 Si 0.799 3.201 18 H -0.186 1.186 19 H -0.223 1.223 20 H -0.226 1.226 21 C 0.014 3.986 22 C -0.075 4.075 23 C -0.184 4.184 24 C -0.180 4.180 25 C -0.098 4.098 26 C -0.153 4.153 27 C -0.160 4.160 28 C -0.148 4.148 29 C -0.140 4.140 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.243 0.757 36 H 0.087 0.913 37 H -0.004 1.004 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.068 0.932 49 H 0.043 0.957 50 H 0.081 0.919 51 H 0.076 0.924 52 H 0.100 0.900 53 H 0.083 0.917 54 H 0.103 0.897 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.176 -14.705 -13.086 19.940 hybrid contribution 0.462 1.542 0.846 1.818 sum -2.714 -13.164 -12.240 18.179 Atomic orbital electron populations 1.21707 0.92780 1.03301 1.02375 1.22766 0.96669 0.82962 1.00435 1.88012 1.18479 1.27828 1.94212 1.22052 0.83526 1.01096 0.90244 0.86341 1.21968 0.82394 0.75202 0.93109 1.90656 1.56369 1.50967 1.47878 1.45721 1.06554 1.73551 1.08461 1.22120 0.94841 0.96740 0.83283 0.90911 1.21903 0.89889 0.92262 0.92950 1.44646 1.13245 1.01488 1.74672 1.19434 0.99066 0.82487 1.34914 0.89830 1.25530 0.96514 1.01506 1.01999 1.70129 1.08132 1.29839 1.51310 0.85131 0.77824 0.80493 0.76669 1.18590 1.22265 1.22594 1.21643 0.93329 0.85692 0.97910 1.21844 0.92239 0.95410 0.98033 1.21684 1.02650 1.00360 0.93679 1.21680 1.02975 0.95901 0.97481 1.21883 1.00254 0.91354 0.96268 1.22202 0.99230 0.96231 0.97594 1.22464 1.00515 0.97524 0.95471 1.22262 0.99344 0.95114 0.98112 1.22082 0.99491 0.99413 0.93012 0.88864 0.93966 0.91251 0.90436 0.94868 0.75699 0.91292 1.00423 0.95031 0.94513 0.95818 0.91428 0.90082 0.95051 0.92012 0.90376 0.91604 0.89447 0.93228 0.95715 0.91858 0.92410 0.89967 0.91737 0.89736 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 10.28 71.98 0.74 -2.08 16 2 C 0.05 1.08 6.46 71.98 0.46 1.54 16 3 O -0.37 -10.84 7.98 -129.99 -1.04 -11.88 16 4 C 0.09 2.57 2.05 29.85 0.06 2.63 16 5 H 0.12 2.30 7.79 -2.39 -0.02 2.28 16 6 C 0.49 17.99 6.51 87.66 0.57 18.56 16 7 O -0.58 -27.25 16.20 15.97 0.26 -26.99 16 8 N -0.69 -23.85 4.58 -435.95 -2.00 -25.85 16 9 C 0.14 5.38 2.61 46.38 0.12 5.50 16 10 H 0.07 3.04 7.53 -2.39 -0.02 3.02 16 11 C 0.16 8.13 5.27 86.86 0.46 8.59 16 12 N -0.61 -30.99 3.39 -691.88 -2.35 -33.34 16 13 C -0.23 -12.76 10.27 84.03 0.86 -11.90 16 14 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 15 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 16 N -0.94 -58.99 10.09 21.65 0.22 -58.77 16 17 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 20 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 21 C 0.14 5.33 6.41 86.75 0.56 5.88 16 22 C -0.07 -2.32 0.81 -50.97 -0.04 -2.36 16 23 C -0.13 -3.66 8.41 71.98 0.61 -3.05 16 24 C -0.12 -2.67 8.08 71.98 0.58 -2.09 16 25 C -0.08 -2.20 2.79 -10.07 -0.03 -2.23 16 26 C -0.11 -4.23 5.65 31.70 0.18 -4.05 16 27 C -0.12 -3.62 6.91 31.91 0.22 -3.40 16 28 C -0.11 -2.46 6.83 31.67 0.22 -2.24 16 29 C -0.10 -2.09 6.21 31.32 0.19 -1.90 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 34 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.41 11.84 6.83 -92.71 -0.63 11.21 16 36 H 0.07 4.25 5.88 -2.39 -0.01 4.24 16 37 H -0.02 -1.28 7.81 -2.39 -0.02 -1.30 16 38 H 0.24 14.89 8.31 -92.71 -0.77 14.11 16 39 H 0.04 1.31 7.77 -2.39 -0.02 1.29 16 40 H 0.02 0.92 7.85 -2.39 -0.02 0.90 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.03 1.10 7.58 -2.39 -0.02 1.08 16 44 H 0.06 1.24 6.42 -2.39 -0.02 1.22 16 45 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.09 2.44 7.95 -2.39 -0.02 2.42 16 48 H 0.05 2.06 7.15 -2.39 -0.02 2.04 16 49 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 53 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 54 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 55 H 0.08 1.44 7.40 -2.38 -0.02 1.42 16 Total: -1.00 -76.83 420.32 3.56 -73.28 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.21 Total: 30.48 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 6.23 Total: 4.24 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -4.13 Total: -117.97 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.78 Total: -38.87 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -76.83 3.56 -73.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700572602.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.048 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds