Wall clock time and date at job start Tue Mar 31 2020 21:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.46616 * 2 1 4 4 C 1.42901 * 113.99603 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47494 * 30.00150 * 4 3 2 6 6 C 1.50699 * 109.47327 * 269.99756 * 4 3 2 7 7 O 1.21278 * 120.00115 * 355.00779 * 6 4 3 8 8 N 1.34780 * 120.00168 * 175.00060 * 6 4 3 9 9 C 1.46496 * 120.00059 * 180.02562 * 8 6 4 10 10 H 1.09001 * 110.88825 * 328.87751 * 9 8 6 11 11 C 1.54913 * 111.00464 * 92.80164 * 9 8 6 12 12 N 1.47421 * 104.83127 * 81.06739 * 11 9 8 13 13 C 1.36942 * 125.65047 * 204.17273 * 12 11 9 14 14 H 1.07991 * 120.00399 * 179.97438 * 13 12 11 15 15 C 1.38816 * 119.99638 * 359.94769 * 13 12 11 16 16 N 1.31617 * 119.99931 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47039 * 89.99705 * 17 15 13 19 19 H 1.48500 * 109.47012 * 209.99855 * 17 15 13 20 20 H 1.48501 * 109.46987 * 329.99617 * 17 15 13 21 21 C 1.47025 * 108.70334 * 24.12605 * 12 11 9 22 22 C 1.54317 * 107.27286 * 358.94213 * 21 12 11 23 23 C 1.52999 * 110.72084 * 219.44495 * 22 21 12 24 24 C 1.52998 * 110.87545 * 96.23911 * 22 21 12 25 25 C 1.53003 * 109.46914 * 150.00311 * 4 3 2 26 26 C 1.54267 * 110.48667 * 299.99809 * 25 4 3 27 27 C 1.53876 * 106.59870 * 217.71131 * 26 25 4 28 28 C 1.54261 * 106.59990 * 0.02562 * 27 26 25 29 29 C 1.54888 * 104.19672 * 23.60631 * 28 27 26 30 30 H 1.09004 * 109.46911 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47270 * 299.99519 * 1 2 3 32 32 H 1.09008 * 109.47310 * 59.99983 * 1 2 3 33 33 H 1.09001 * 109.46854 * 240.00642 * 2 1 3 34 34 H 1.08995 * 109.46992 * 119.99836 * 2 1 3 35 35 H 0.96997 * 119.99619 * 0.02562 * 8 6 4 36 36 H 1.09001 * 110.36253 * 199.90248 * 11 9 8 37 37 H 1.08999 * 110.36885 * 322.22410 * 11 9 8 38 38 H 0.96998 * 120.00261 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.87855 * 239.52286 * 21 12 11 40 40 H 1.08997 * 110.00854 * 118.43478 * 21 12 11 41 41 H 1.09001 * 109.47133 * 173.51929 * 23 22 21 42 42 H 1.08994 * 109.47023 * 293.52047 * 23 22 21 43 43 H 1.09001 * 109.47509 * 53.52325 * 23 22 21 44 44 H 1.09001 * 109.47270 * 306.39718 * 24 22 21 45 45 H 1.09010 * 109.46666 * 66.38972 * 24 22 21 46 46 H 1.08993 * 109.47856 * 186.38740 * 24 22 21 47 47 H 1.09004 * 110.54016 * 62.61099 * 25 4 3 48 48 H 1.08995 * 110.03032 * 98.42858 * 26 25 4 49 49 H 1.08998 * 110.03405 * 336.99797 * 26 25 4 50 50 H 1.08998 * 110.02768 * 119.28860 * 27 26 25 51 51 H 1.08994 * 110.03051 * 240.71540 * 27 26 25 52 52 H 1.09000 * 110.48928 * 142.28640 * 28 27 26 53 53 H 1.08999 * 110.48469 * 264.93049 * 28 27 26 54 54 H 1.09005 * 110.75648 * 80.37263 * 29 28 27 55 55 H 1.08999 * 110.75852 * 203.74195 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6016 -0.5129 6 6 3.9310 1.5001 1.4216 7 8 3.1415 1.5295 2.3418 8 7 5.2557 1.5031 1.6699 9 6 5.7419 1.5414 3.0513 10 1 5.0502 2.0886 3.6917 11 6 5.9883 0.1111 3.5930 12 7 7.3098 -0.2708 3.0628 13 6 7.7522 -1.5522 2.8690 14 1 8.7414 -1.7280 2.4732 15 6 6.9290 -2.6253 3.1819 16 7 5.7237 -2.4111 3.6653 17 14 7.5326 -4.3733 2.9183 18 1 8.2099 -4.8541 4.1492 19 1 6.3774 -5.2550 2.6124 20 1 8.4901 -4.4005 1.7835 21 6 8.0739 0.9521 2.7755 22 6 7.1668 2.1513 3.1226 23 6 7.3292 3.2694 2.0910 24 6 7.4637 2.6697 4.5311 25 6 3.8408 2.7457 -0.7206 26 6 3.3398 2.7296 -2.1796 27 6 4.4423 3.3845 -3.0302 28 6 5.5749 3.7752 -2.0586 29 6 5.3824 2.8264 -0.8495 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 5.8871 1.4799 0.9339 36 1 6.0038 0.1158 4.6829 37 1 5.2210 -0.5708 3.2266 38 1 5.1484 -3.1609 3.8835 39 1 8.3408 0.9827 1.7191 40 1 8.9760 0.9804 3.3866 41 1 6.5997 4.0548 2.2885 42 1 8.3355 3.6827 2.1586 43 1 7.1681 2.8672 1.0908 44 1 7.3971 1.8468 5.2428 45 1 8.4679 3.0931 4.5583 46 1 6.7380 3.4387 4.7959 47 1 3.4551 3.6191 -0.1945 48 1 2.4151 3.3005 -2.2632 49 1 3.1761 1.7029 -2.5069 50 1 4.8135 2.6756 -3.7702 51 1 4.0525 4.2732 -3.5265 52 1 6.5481 3.6110 -2.5212 53 1 5.4696 4.8148 -1.7482 54 1 5.8048 1.8435 -1.0587 55 1 5.8233 3.2538 0.0510 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700572603.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:03 Heat of formation + Delta-G solvation = -91.401217 kcal Electronic energy + Delta-G solvation = -32694.635205 eV Core-core repulsion = 28730.854066 eV Total energy + Delta-G solvation = -3963.781140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64918 -40.09835 -38.74457 -38.07575 -35.67518 -34.55900 -32.86329 -32.62371 -30.94454 -29.89105 -29.26099 -28.13184 -27.46079 -26.41184 -24.94973 -23.85650 -22.40491 -21.55072 -21.28905 -20.85309 -20.10469 -18.76440 -18.59804 -17.95644 -17.32045 -16.77113 -16.58484 -16.36217 -15.94623 -15.67221 -15.40094 -15.17605 -15.15112 -14.73795 -14.65207 -14.25739 -14.11889 -13.73332 -13.69401 -13.47526 -13.23387 -13.06010 -13.04606 -12.90229 -12.80391 -12.66242 -12.62057 -12.36374 -12.14013 -12.09111 -12.04621 -11.96130 -11.89041 -11.78729 -11.62995 -11.48188 -11.46030 -11.36635 -11.35271 -11.19538 -10.79436 -10.24522 -9.92862 -8.85564 -7.76181 -5.21542 1.43772 1.45533 1.54166 1.61067 2.09617 2.48028 2.64198 3.33424 3.55237 3.56107 3.61644 3.69200 3.82534 3.90325 3.96369 4.00406 4.07320 4.11874 4.23175 4.39250 4.40907 4.43089 4.50557 4.56907 4.65205 4.66753 4.71944 4.74548 4.79870 4.83302 4.85430 4.91627 4.92054 4.96963 4.98951 5.04397 5.12860 5.18325 5.19752 5.19981 5.28861 5.29809 5.33058 5.35543 5.43078 5.48933 5.54112 5.57575 5.68179 5.81827 6.00974 6.29286 6.62361 7.08330 7.29988 7.78402 8.42520 9.24332 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009093 B = 0.004542 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.498206 B = 6163.132309 C = 7471.969406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.087 3.913 5 H 0.090 0.910 6 C 0.484 3.516 7 O -0.580 6.580 8 N -0.689 5.689 9 C 0.132 3.868 10 H 0.076 0.924 11 C 0.156 3.844 12 N -0.616 5.616 13 C -0.231 4.231 14 H 0.086 0.914 15 C -0.068 4.068 16 N -0.950 5.950 17 Si 0.976 3.024 18 H -0.290 1.290 19 H -0.299 1.299 20 H -0.264 1.264 21 C 0.138 3.862 22 C -0.074 4.074 23 C -0.129 4.129 24 C -0.126 4.126 25 C -0.077 4.077 26 C -0.108 4.108 27 C -0.122 4.122 28 C -0.114 4.114 29 C -0.138 4.138 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.019 0.981 35 H 0.407 0.593 36 H -0.017 1.017 37 H 0.067 0.933 38 H 0.242 0.758 39 H 0.037 0.963 40 H 0.027 0.973 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.070 0.930 51 H 0.074 0.926 52 H 0.081 0.919 53 H 0.073 0.927 54 H 0.072 0.928 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 14.367 -14.300 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 O -0.284 6.284 4 C 0.026 3.974 5 H 0.108 0.892 6 C 0.271 3.729 7 O -0.460 6.460 8 N -0.342 5.342 9 C 0.026 3.974 10 H 0.094 0.906 11 C 0.029 3.971 12 N -0.342 5.342 13 C -0.360 4.360 14 H 0.104 0.896 15 C -0.261 4.261 16 N -0.600 5.600 17 Si 0.805 3.195 18 H -0.217 1.217 19 H -0.226 1.226 20 H -0.188 1.188 21 C 0.014 3.986 22 C -0.075 4.075 23 C -0.186 4.186 24 C -0.184 4.184 25 C -0.096 4.096 26 C -0.145 4.145 27 C -0.159 4.159 28 C -0.152 4.152 29 C -0.175 4.175 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.246 0.754 36 H 0.001 0.999 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.089 0.911 51 H 0.092 0.908 52 H 0.099 0.901 53 H 0.092 0.908 54 H 0.091 0.909 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.776 14.341 -13.658 19.883 hybrid contribution 0.329 -1.949 0.651 2.081 sum -1.447 12.392 -13.007 18.023 Atomic orbital electron populations 1.21688 0.91694 1.03355 1.02980 1.22706 0.97399 0.83053 0.99615 1.87917 1.18801 1.27400 1.94283 1.22215 0.83063 1.01573 0.90564 0.89205 1.21936 0.82601 0.75390 0.92955 1.90650 1.56364 1.51147 1.47799 1.45929 1.06462 1.73191 1.08645 1.22196 0.95105 0.96884 0.83241 0.90643 1.21918 0.89221 0.92790 0.93142 1.44678 1.13402 1.01150 1.75001 1.19459 0.99023 0.82355 1.35150 0.89617 1.25614 0.96694 1.01783 1.01960 1.70127 1.09360 1.29356 1.51176 0.85105 0.76721 0.79737 0.77954 1.21710 1.22589 1.18841 1.21640 0.93823 0.85296 0.97877 1.21833 0.92241 0.95252 0.98185 1.21838 1.03202 0.96404 0.97179 1.21689 1.02758 1.00162 0.93775 1.22007 0.97015 0.93878 0.96685 1.22058 0.99038 1.01384 0.92040 1.22156 0.95115 1.00835 0.97831 1.22293 0.99289 0.99049 0.94525 1.22938 0.93063 1.01131 1.00416 0.89420 0.93135 0.90384 0.91444 0.96273 0.75384 0.99932 0.91530 0.94853 0.94493 0.95549 0.91629 0.90122 0.91802 0.94920 0.89990 0.91457 0.90441 0.91416 0.91897 0.91103 0.90756 0.90074 0.90801 0.90914 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 10.28 71.98 0.74 -2.59 16 2 C 0.05 1.45 6.46 71.98 0.46 1.91 16 3 O -0.37 -11.79 9.20 -129.99 -1.20 -12.98 16 4 C 0.09 2.62 1.98 29.85 0.06 2.68 16 5 H 0.09 2.54 7.76 -2.39 -0.02 2.53 16 6 C 0.48 18.59 7.10 87.66 0.62 19.21 16 7 O -0.58 -27.78 16.15 15.96 0.26 -27.52 16 8 N -0.69 -24.42 3.80 -435.96 -1.66 -26.08 16 9 C 0.13 5.25 2.67 46.39 0.12 5.37 16 10 H 0.08 3.19 7.44 -2.39 -0.02 3.17 16 11 C 0.16 8.06 5.28 86.86 0.46 8.52 16 12 N -0.62 -30.95 3.39 -692.00 -2.35 -33.30 16 13 C -0.23 -12.71 10.27 84.03 0.86 -11.84 16 14 H 0.09 4.45 7.83 -2.92 -0.02 4.43 16 15 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 16 N -0.95 -58.75 10.09 21.65 0.22 -58.53 16 17 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 21 C 0.14 5.28 6.41 86.73 0.56 5.84 16 22 C -0.07 -2.33 0.80 -51.00 -0.04 -2.37 16 23 C -0.13 -2.87 7.64 71.98 0.55 -2.32 16 24 C -0.13 -3.66 8.41 71.98 0.61 -3.05 16 25 C -0.08 -1.73 2.63 -9.71 -0.03 -1.75 16 26 C -0.11 -1.95 6.07 31.32 0.19 -1.76 16 27 C -0.12 -1.67 6.80 31.32 0.21 -1.46 16 28 C -0.11 -1.56 6.83 31.67 0.22 -1.35 16 29 C -0.14 -2.54 4.41 31.89 0.14 -2.40 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 34 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.41 12.50 4.70 -92.71 -0.44 12.06 16 36 H -0.02 -0.98 7.81 -2.39 -0.02 -1.00 16 37 H 0.07 4.07 5.87 -2.39 -0.01 4.06 16 38 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.04 1.31 7.77 -2.39 -0.02 1.29 16 40 H 0.03 1.01 7.85 -2.39 -0.02 0.99 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.33 4.50 -2.39 -0.01 1.32 16 44 H 0.03 1.13 7.59 -2.39 -0.02 1.12 16 45 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 48 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.06 1.17 7.84 -2.39 -0.02 1.15 16 50 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.07 1.36 7.52 -2.38 -0.02 1.35 16 55 H 0.08 1.53 4.70 -2.39 -0.01 1.51 16 Total: -1.00 -74.52 412.60 3.92 -70.61 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.42 Total: 30.54 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.20 Total: 9.21 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -3.79 Total: -117.90 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.94 Total: -40.50 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -74.52 3.92 -70.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700572603.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.796 kcal (2) G-P(sol) polarization free energy of solvation -74.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds