Wall clock time and date at job start Tue Mar 31 2020 21:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.46790 * 2 1 4 4 C 1.42898 * 113.99813 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47081 * 30.00824 * 4 3 2 6 6 C 1.50703 * 109.46870 * 150.00101 * 4 3 2 7 7 O 1.21284 * 120.00034 * 5.00566 * 6 4 3 8 8 N 1.34773 * 120.00231 * 184.99728 * 6 4 3 9 9 C 1.46500 * 120.00440 * 180.02562 * 8 6 4 10 10 H 1.09003 * 110.88290 * 34.30247 * 9 8 6 11 11 C 1.54913 * 111.00389 * 270.42021 * 9 8 6 12 12 N 1.47421 * 104.83207 * 278.93543 * 11 9 8 13 13 C 1.36934 * 125.64694 * 155.91129 * 12 11 9 14 14 H 1.08002 * 120.00078 * 342.02786 * 13 12 11 15 15 C 1.38817 * 120.00358 * 162.03545 * 13 12 11 16 16 N 1.31614 * 120.00353 * 156.34202 * 15 13 12 17 17 Si 1.86802 * 119.99459 * 336.34310 * 15 13 12 18 18 H 1.48504 * 109.47261 * 84.68618 * 17 15 13 19 19 H 1.48498 * 109.46765 * 204.68536 * 17 15 13 20 20 H 1.48498 * 109.47261 * 324.68530 * 17 15 13 21 21 C 1.47015 * 108.70398 * 335.86760 * 12 11 9 22 22 C 1.54428 * 107.28200 * 1.06613 * 21 12 11 23 23 C 1.53003 * 110.72429 * 263.84221 * 22 21 12 24 24 C 1.53001 * 110.76243 * 140.54171 * 22 21 12 25 25 C 1.52997 * 109.47451 * 270.00134 * 4 3 2 26 26 C 1.54897 * 110.75415 * 60.00112 * 25 4 3 27 27 C 1.54262 * 104.31043 * 156.32658 * 26 25 4 28 28 C 1.53876 * 106.60028 * 336.32280 * 27 26 25 29 29 C 1.54271 * 106.59908 * 0.02562 * 28 27 26 30 30 H 1.09006 * 109.46570 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47476 * 299.99658 * 1 2 3 32 32 H 1.09002 * 109.47062 * 60.00196 * 1 2 3 33 33 H 1.08998 * 109.47128 * 240.00886 * 2 1 3 34 34 H 1.08996 * 109.47455 * 119.99942 * 2 1 3 35 35 H 0.97009 * 119.99909 * 0.02562 * 8 6 4 36 36 H 1.08998 * 110.36091 * 37.77367 * 11 9 8 37 37 H 1.08994 * 110.36439 * 159.98276 * 11 9 8 38 38 H 0.96999 * 119.99784 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.88439 * 120.47782 * 21 12 11 40 40 H 1.09003 * 109.88879 * 241.49049 * 21 12 11 41 41 H 1.08998 * 109.47086 * 173.46660 * 23 22 21 42 42 H 1.09002 * 109.47354 * 293.46925 * 23 22 21 43 43 H 1.09000 * 109.46796 * 53.46612 * 23 22 21 44 44 H 1.09006 * 109.47066 * 306.50915 * 24 22 21 45 45 H 1.08995 * 109.47318 * 66.50767 * 24 22 21 46 46 H 1.08999 * 109.47143 * 186.51146 * 24 22 21 47 47 H 1.09003 * 110.81575 * 296.66961 * 25 4 3 48 48 H 1.09002 * 110.48273 * 37.57975 * 26 25 4 49 49 H 1.09003 * 110.48311 * 275.06740 * 26 25 4 50 50 H 1.08997 * 110.03802 * 95.60964 * 27 26 25 51 51 H 1.09005 * 110.03207 * 216.99316 * 27 26 25 52 52 H 1.08998 * 110.03532 * 119.28880 * 28 27 26 53 53 H 1.09010 * 110.03233 * 240.71856 * 28 27 26 54 54 H 1.08997 * 110.48512 * 142.28962 * 29 28 27 55 55 H 1.08998 * 110.48253 * 264.80049 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6017 -0.5131 6 6 3.8346 2.7265 -0.7098 7 8 2.9863 3.5048 -1.0912 8 7 5.1385 2.9941 -0.9213 9 6 5.5311 4.2253 -1.6114 10 1 4.8510 5.0414 -1.3673 11 6 5.6057 4.0038 -3.1428 12 7 6.9188 3.3731 -3.3694 13 6 7.2523 2.5863 -4.4394 14 1 6.4766 2.1439 -5.0469 15 6 8.5872 2.3572 -4.7432 16 7 8.9323 1.2866 -5.4267 17 14 9.8940 3.5683 -4.1818 18 1 10.2972 3.2509 -2.7883 19 1 11.0768 3.4691 -5.0742 20 1 9.3468 4.9477 -4.2368 21 6 7.8113 3.7296 -2.2569 22 6 6.9981 4.6056 -1.2790 23 6 7.2465 6.0911 -1.5481 24 6 7.3332 4.2533 0.1717 25 6 3.9387 1.5007 1.4432 26 6 3.5392 0.2108 2.2022 27 6 4.5729 0.1036 3.3422 28 6 5.8131 0.8926 2.8868 29 6 5.4894 1.4523 1.4861 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.8171 2.3714 -0.6165 36 1 4.8048 3.3405 -3.4695 37 1 5.5454 4.9573 -3.6673 38 1 9.8651 1.1268 -5.6393 39 1 8.1512 2.8263 -1.7502 40 1 8.6684 4.2881 -2.6333 41 1 6.5787 6.6893 -0.9282 42 1 8.2813 6.3358 -1.3082 43 1 7.0567 6.3066 -2.5996 44 1 7.2040 3.1818 0.3246 45 1 8.3665 4.5285 0.3831 46 1 6.6679 4.7987 0.8410 47 1 3.5655 2.3846 1.9606 48 1 3.6061 -0.6553 1.5437 49 1 2.5319 0.3036 2.6081 50 1 4.1680 0.5391 4.2556 51 1 4.8353 -0.9408 3.5112 52 1 6.0100 1.7110 3.5792 53 1 6.6779 0.2311 2.8343 54 1 5.9058 2.4529 1.3696 55 1 5.8731 0.7879 0.7119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700572604.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:07 Heat of formation + Delta-G solvation = -84.051642 kcal Electronic energy + Delta-G solvation = -32520.014192 eV Core-core repulsion = 28556.551754 eV Total energy + Delta-G solvation = -3963.462438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.74541 -40.34066 -38.96419 -37.92499 -35.74225 -34.56512 -33.39849 -32.81656 -31.00144 -30.05856 -29.41776 -28.21298 -27.68421 -26.66943 -25.09065 -23.67885 -22.55122 -21.42245 -21.35042 -21.16539 -20.35701 -19.12904 -18.41888 -17.79217 -17.54669 -17.20953 -16.87065 -16.29038 -15.85321 -15.82527 -15.60840 -15.30046 -15.22777 -14.86545 -14.45314 -14.39733 -14.31805 -14.21512 -13.74961 -13.51756 -13.42942 -13.33612 -13.28053 -13.08392 -12.97615 -12.89906 -12.58420 -12.44004 -12.33772 -12.23795 -12.01789 -11.90518 -11.84333 -11.77572 -11.69880 -11.65972 -11.60241 -11.21704 -11.18591 -10.89902 -10.78275 -10.35574 -10.08597 -9.06692 -8.20162 -5.45349 1.27576 1.38193 1.47974 1.53375 1.83282 2.39227 2.87190 3.00267 3.28370 3.38689 3.47955 3.56258 3.71464 3.76673 3.89571 3.93433 3.95390 4.15126 4.23385 4.29828 4.33529 4.35989 4.45340 4.50073 4.52696 4.61074 4.64457 4.65820 4.69201 4.72816 4.79382 4.80843 4.82608 4.88891 4.91170 4.92411 5.00884 5.02531 5.02562 5.12173 5.15793 5.23727 5.26359 5.27330 5.31038 5.37712 5.42581 5.51708 5.53404 5.63603 6.07124 6.09484 6.51953 6.73239 7.18901 7.51128 8.07139 9.00098 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.003764 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.640474 B = 7437.309407 C = 7859.677272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.036 3.964 3 O -0.380 6.380 4 C 0.085 3.915 5 H 0.092 0.908 6 C 0.513 3.487 7 O -0.569 6.569 8 N -0.697 5.697 9 C 0.150 3.850 10 H 0.105 0.895 11 C 0.121 3.879 12 N -0.618 5.618 13 C -0.236 4.236 14 H 0.051 0.949 15 C -0.032 4.032 16 N -0.953 5.953 17 Si 0.951 3.049 18 H -0.265 1.265 19 H -0.312 1.312 20 H -0.273 1.273 21 C 0.121 3.879 22 C -0.073 4.073 23 C -0.133 4.133 24 C -0.134 4.134 25 C -0.100 4.100 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.118 4.118 29 C -0.139 4.139 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.409 0.591 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.263 0.737 39 H 0.034 0.966 40 H 0.019 0.981 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.073 0.927 52 H 0.071 0.929 53 H 0.071 0.929 54 H 0.078 0.922 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 -0.484 22.704 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 O -0.299 6.299 4 C 0.024 3.976 5 H 0.109 0.891 6 C 0.300 3.700 7 O -0.447 6.447 8 N -0.351 5.351 9 C 0.045 3.955 10 H 0.123 0.877 11 C -0.005 4.005 12 N -0.345 5.345 13 C -0.365 4.365 14 H 0.069 0.931 15 C -0.226 4.226 16 N -0.599 5.599 17 Si 0.781 3.219 18 H -0.190 1.190 19 H -0.241 1.241 20 H -0.200 1.200 21 C -0.003 4.003 22 C -0.075 4.075 23 C -0.190 4.190 24 C -0.191 4.191 25 C -0.119 4.119 26 C -0.154 4.154 27 C -0.158 4.158 28 C -0.156 4.156 29 C -0.176 4.176 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.037 0.963 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.092 0.908 52 H 0.090 0.910 53 H 0.090 0.910 54 H 0.097 0.903 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.091 0.075 22.303 24.085 hybrid contribution 1.138 -0.187 -1.011 1.534 sum -7.953 -0.111 21.292 22.730 Atomic orbital electron populations 1.21749 0.92717 1.03465 1.02542 1.23074 0.96651 0.82649 1.01601 1.87992 1.18588 1.28282 1.95062 1.21958 0.83682 0.95108 0.96843 0.89063 1.20880 0.82359 0.87997 0.78777 1.90665 1.51240 1.50361 1.52434 1.45954 1.06972 1.23787 1.58397 1.22023 0.95906 0.87188 0.90430 0.87671 1.22110 0.87378 0.95738 0.95299 1.44754 1.10199 1.57727 1.21789 1.18516 0.91974 1.20280 1.05682 0.93066 1.25546 0.98766 0.98820 0.99513 1.69978 1.17753 1.26354 1.45862 0.85872 0.78143 0.80624 0.77243 1.19046 1.24135 1.19966 1.21974 0.93279 0.96504 0.88552 1.21878 0.92307 0.96708 0.96560 1.21769 1.03029 0.92536 1.01708 1.21867 1.03012 1.01954 0.92273 1.22572 0.96410 1.00633 0.92322 1.22523 0.99696 0.95833 0.97340 1.22129 0.94800 1.00959 0.97930 1.22073 0.98387 0.99926 0.95188 1.22804 0.93625 1.02174 0.99025 0.88646 0.91700 0.93367 0.93597 0.90038 0.75244 0.95556 0.94525 0.92818 0.94804 0.96341 0.89682 0.91039 0.93878 0.92005 0.90811 0.90098 0.90062 0.90910 0.90792 0.91157 0.90807 0.91019 0.91003 0.90313 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.04 0.72 6.18 71.98 0.44 1.17 16 3 O -0.38 -10.61 9.46 -129.99 -1.23 -11.84 16 4 C 0.09 2.19 2.32 29.85 0.07 2.26 16 5 H 0.09 2.19 7.75 -2.39 -0.02 2.17 16 6 C 0.51 16.67 7.16 87.66 0.63 17.29 16 7 O -0.57 -23.14 16.20 15.95 0.26 -22.88 16 8 N -0.70 -20.93 3.94 -435.96 -1.72 -22.65 16 9 C 0.15 4.88 2.61 46.38 0.12 5.00 16 10 H 0.11 3.31 7.53 -2.39 -0.02 3.29 16 11 C 0.12 5.05 6.62 86.86 0.57 5.62 16 12 N -0.62 -29.58 3.21 -691.80 -2.22 -31.80 16 13 C -0.24 -13.75 10.56 84.04 0.89 -12.86 16 14 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 15 C -0.03 -1.86 5.44 84.86 0.46 -1.40 16 16 N -0.95 -60.02 13.97 21.65 0.30 -59.72 16 17 Si 0.95 46.74 24.39 68.60 1.67 48.42 16 18 H -0.26 -11.93 6.84 99.48 0.68 -11.24 16 19 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 20 H -0.27 -13.07 6.87 99.48 0.68 -12.38 16 21 C 0.12 4.84 4.33 86.77 0.38 5.22 16 22 C -0.07 -2.14 0.81 -50.96 -0.04 -2.18 16 23 C -0.13 -3.42 8.41 71.98 0.61 -2.82 16 24 C -0.13 -2.84 7.70 71.98 0.55 -2.28 16 25 C -0.10 -1.91 2.66 -9.39 -0.02 -1.94 16 26 C -0.12 -1.70 4.44 31.67 0.14 -1.56 16 27 C -0.12 -1.46 6.80 31.32 0.21 -1.25 16 28 C -0.12 -1.56 6.80 31.32 0.21 -1.35 16 29 C -0.14 -2.33 4.45 31.78 0.14 -2.19 16 30 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 0.93 8.09 -2.39 -0.02 0.91 16 34 H 0.08 1.24 4.72 -2.39 -0.01 1.23 16 35 H 0.41 11.12 4.60 -92.70 -0.43 10.69 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.04 1.52 7.81 -2.39 -0.02 1.50 16 38 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.03 1.38 7.77 -2.38 -0.02 1.37 16 40 H 0.02 0.82 3.22 -2.39 -0.01 0.81 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.29 7.58 -2.39 -0.02 1.27 16 44 H 0.06 1.27 4.66 -2.38 -0.01 1.26 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.07 1.00 6.97 -2.39 -0.02 0.99 16 49 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 52 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 54 H 0.08 1.33 4.98 -2.39 -0.01 1.32 16 55 H 0.07 1.21 7.58 -2.39 -0.02 1.20 16 Total: -1.00 -75.04 402.66 3.56 -71.48 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.39 Total: 24.04 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 6.10 Total: 4.94 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -3.64 Total: -114.16 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.97 Total: -34.71 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.67 Total: 48.42 kcal Total: -75.04 3.56 -71.48 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700572604.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.572 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds