Wall clock time and date at job start Tue Mar 31 2020 21:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46778 * 2 1 4 4 C 1.42894 * 113.99731 * 184.98224 * 3 2 1 5 5 H 1.08999 * 109.47174 * 34.46725 * 4 3 2 6 6 C 1.50699 * 109.47185 * 154.46749 * 4 3 2 7 7 O 1.21291 * 119.99743 * 18.72839 * 6 4 3 8 8 N 1.34774 * 120.00344 * 198.72522 * 6 4 3 9 9 C 1.46503 * 119.99986 * 175.07776 * 8 6 4 10 10 H 1.08998 * 110.91744 * 328.90916 * 9 8 6 11 11 C 1.55392 * 111.01869 * 93.06317 * 9 8 6 12 12 N 1.47422 * 104.87780 * 80.97788 * 11 9 8 13 13 C 1.36933 * 125.65150 * 204.09415 * 12 11 9 14 14 H 1.08004 * 120.00091 * 180.02562 * 13 12 11 15 15 C 1.38806 * 119.99811 * 0.04833 * 13 12 11 16 16 N 1.31620 * 120.00530 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99803 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47595 * 89.99833 * 17 15 13 19 19 H 1.48507 * 109.47011 * 209.99633 * 17 15 13 20 20 H 1.48494 * 109.47126 * 329.99499 * 17 15 13 21 21 C 1.47030 * 108.70198 * 24.13278 * 12 11 9 22 22 C 1.54332 * 107.26763 * 358.94032 * 21 12 11 23 23 C 1.53003 * 110.72065 * 96.16972 * 22 21 12 24 24 C 1.53002 * 110.71499 * 219.26573 * 22 21 12 25 25 C 1.53005 * 109.47050 * 274.46652 * 4 3 2 26 26 C 1.54258 * 110.03093 * 291.86766 * 25 4 3 27 27 C 1.54966 * 104.16081 * 217.13446 * 26 25 4 28 28 C 1.54892 * 102.77566 * 37.89095 * 27 26 25 29 29 C 1.53879 * 110.03021 * 174.65019 * 25 4 3 30 30 H 1.09007 * 109.46639 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47334 * 299.99403 * 1 2 3 32 32 H 1.08996 * 109.47502 * 60.00122 * 1 2 3 33 33 H 1.08998 * 109.46823 * 240.00525 * 2 1 3 34 34 H 1.08992 * 109.47106 * 120.00161 * 2 1 3 35 35 H 0.96996 * 119.99701 * 355.08997 * 8 6 4 36 36 H 1.09003 * 110.34082 * 322.13169 * 11 9 8 37 37 H 1.08996 * 110.35060 * 199.83903 * 11 9 8 38 38 H 0.96991 * 120.00290 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.88252 * 239.52692 * 21 12 11 40 40 H 1.08996 * 110.01292 * 118.42603 * 21 12 11 41 41 H 1.08997 * 109.47007 * 183.83593 * 23 22 21 42 42 H 1.09000 * 109.47141 * 303.84208 * 23 22 21 43 43 H 1.09004 * 109.46538 * 63.84026 * 23 22 21 44 44 H 1.09003 * 109.47190 * 296.15601 * 24 22 21 45 45 H 1.08993 * 109.47239 * 56.15976 * 24 22 21 46 46 H 1.09007 * 109.46944 * 176.15824 * 24 22 21 47 47 H 1.09002 * 110.01687 * 53.26547 * 25 4 3 48 48 H 1.08995 * 110.49476 * 335.78517 * 26 25 4 49 49 H 1.09001 * 110.48780 * 98.43147 * 26 25 4 50 50 H 1.08994 * 110.72395 * 279.57728 * 27 26 25 51 51 H 1.09006 * 110.92390 * 156.29588 * 27 26 25 52 52 H 1.08999 * 110.48916 * 203.40759 * 28 27 26 53 53 H 1.09005 * 110.48737 * 80.76105 * 28 27 26 54 54 H 1.08997 * 110.03362 * 238.56753 * 29 25 4 55 55 H 1.09001 * 110.03293 * 0.02562 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4262 1.4618 -0.1134 5 1 3.8052 0.6636 -0.7515 6 6 3.7758 2.7972 -0.7180 7 8 2.9633 3.6977 -0.7104 8 7 4.9912 2.9909 -1.2672 9 6 5.2941 4.2511 -1.9502 10 1 4.3985 4.6700 -2.4090 11 6 5.9549 5.2672 -0.9778 12 7 7.3738 4.8711 -0.9233 13 6 8.2389 5.1408 0.1034 14 1 9.2642 4.8061 0.0476 15 6 7.7978 5.8438 1.2160 16 7 6.5482 6.2518 1.2840 17 14 8.9777 6.2110 2.6169 18 1 9.6497 7.5120 2.3700 19 1 8.2236 6.2781 3.8945 20 1 9.9976 5.1349 2.7000 21 6 7.7067 4.1394 -2.1544 22 6 6.4189 4.0577 -3.0011 23 6 6.3844 5.1774 -4.0433 24 6 6.3005 2.6894 -3.6753 25 6 4.0594 1.3492 1.2749 26 6 3.6928 2.5833 2.1247 27 6 4.9742 2.8716 2.9470 28 6 6.1065 2.5641 1.9359 29 6 5.5934 1.3365 1.1551 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.6654 2.2958 -1.2103 36 1 5.5025 5.1944 0.0112 37 1 5.8586 6.2811 -1.3662 38 1 6.2402 6.7433 2.0613 39 1 8.0520 3.1357 -1.9071 40 1 8.4806 4.6719 -2.7072 41 1 5.4381 5.1422 -4.5830 42 1 6.4825 6.1414 -3.5442 43 1 7.2080 5.0460 -4.7451 44 1 7.1240 2.5576 -4.3771 45 1 6.3396 1.9065 -2.9180 46 1 5.3532 2.6293 -4.2114 47 1 3.7160 0.4402 1.7689 48 1 3.4529 3.4309 1.4828 49 1 2.8570 2.3562 2.7865 50 1 5.0361 2.2084 3.8098 51 1 5.0090 3.9150 3.2605 52 1 7.0313 2.3234 2.4602 53 1 6.2569 3.4085 1.2632 54 1 5.9946 0.4220 1.5918 55 1 5.8868 1.4112 0.1079 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700572605.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:11 Heat of formation + Delta-G solvation = -82.198997 kcal Electronic energy + Delta-G solvation = -33595.646546 eV Core-core repulsion = 29632.264445 eV Total energy + Delta-G solvation = -3963.382102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.70678 -40.07135 -38.54190 -38.00337 -35.61076 -34.46354 -32.66798 -32.50954 -30.85500 -29.70000 -29.41285 -28.05317 -27.34650 -26.41994 -24.82663 -23.65963 -22.46944 -21.59550 -21.32496 -20.88744 -19.85335 -18.63179 -18.18687 -17.84707 -17.20373 -16.97222 -16.45334 -16.40954 -15.68609 -15.55284 -15.51507 -15.25905 -15.04016 -14.65285 -14.44541 -14.27652 -13.87621 -13.71439 -13.58974 -13.41726 -13.25458 -13.02357 -13.01571 -12.98226 -12.78133 -12.61320 -12.52501 -12.35110 -12.08451 -11.96601 -11.88112 -11.79974 -11.78921 -11.70593 -11.70025 -11.65409 -11.45050 -11.32165 -11.18254 -10.79530 -10.65317 -10.27503 -9.84816 -8.73406 -7.64604 -5.08134 1.45480 1.46875 1.54221 1.71988 1.97352 2.53467 2.98409 3.45286 3.57021 3.61948 3.66681 3.73986 3.80420 3.94275 4.01983 4.05856 4.12034 4.20343 4.37873 4.42865 4.45634 4.50891 4.55481 4.57783 4.69745 4.74181 4.78747 4.79402 4.85140 4.87617 4.91546 4.93578 4.96760 5.00000 5.07813 5.08223 5.10370 5.13119 5.24333 5.29077 5.31161 5.35191 5.36642 5.39914 5.48969 5.55789 5.59691 5.73955 5.81596 5.97546 6.20297 6.41700 6.71381 7.19504 7.39511 7.89437 8.53446 9.34057 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.005328 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.607950 B = 5253.951724 C = 6968.390812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.385 6.385 4 C 0.089 3.911 5 H 0.113 0.887 6 C 0.517 3.483 7 O -0.575 6.575 8 N -0.687 5.687 9 C 0.134 3.866 10 H 0.073 0.927 11 C 0.158 3.842 12 N -0.608 5.608 13 C -0.224 4.224 14 H 0.078 0.922 15 C -0.044 4.044 16 N -0.933 5.933 17 Si 0.953 3.047 18 H -0.296 1.296 19 H -0.302 1.302 20 H -0.267 1.267 21 C 0.140 3.860 22 C -0.075 4.075 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.097 4.097 26 C -0.114 4.114 27 C -0.116 4.116 28 C -0.131 4.131 29 C -0.108 4.108 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.405 0.595 36 H 0.078 0.922 37 H -0.023 1.023 38 H 0.238 0.762 39 H 0.036 0.964 40 H 0.022 0.978 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.112 0.888 48 H 0.038 0.962 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.028 0.972 52 H 0.052 0.948 53 H 0.068 0.932 54 H 0.095 0.905 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 -18.290 -6.338 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.304 6.304 4 C 0.027 3.973 5 H 0.131 0.869 6 C 0.304 3.696 7 O -0.454 6.454 8 N -0.342 5.342 9 C 0.027 3.973 10 H 0.091 0.909 11 C 0.032 3.968 12 N -0.334 5.334 13 C -0.353 4.353 14 H 0.096 0.904 15 C -0.238 4.238 16 N -0.582 5.582 17 Si 0.783 3.217 18 H -0.224 1.224 19 H -0.229 1.229 20 H -0.192 1.192 21 C 0.015 3.985 22 C -0.077 4.077 23 C -0.183 4.183 24 C -0.182 4.182 25 C -0.116 4.116 26 C -0.151 4.151 27 C -0.153 4.153 28 C -0.169 4.169 29 C -0.146 4.146 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.245 0.755 36 H 0.095 0.905 37 H -0.006 1.006 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.130 0.870 48 H 0.056 0.944 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.047 0.953 52 H 0.071 0.929 53 H 0.086 0.914 54 H 0.114 0.886 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.550 -17.430 -6.156 19.300 hybrid contribution 1.016 1.071 1.191 1.897 sum -4.533 -16.359 -4.964 17.687 Atomic orbital electron populations 1.21761 0.93186 1.03419 1.02272 1.22869 0.96234 0.82356 1.01689 1.88053 1.19225 1.28598 1.94568 1.22094 0.83472 0.94552 0.97135 0.86928 1.20763 0.81794 0.90079 0.77005 1.90672 1.50995 1.45722 1.57980 1.45865 1.13659 1.18392 1.56237 1.22249 0.96745 0.85217 0.93047 0.90887 1.22003 0.84628 0.91267 0.98913 1.44545 1.07393 1.64354 1.17118 1.19217 0.92217 1.28784 0.95059 0.90402 1.25230 0.97224 1.01181 1.00186 1.70069 1.15305 1.43569 1.29291 0.85460 0.78582 0.77911 0.79736 1.22369 1.22912 1.19223 1.21599 0.95013 0.95109 0.86799 1.21836 0.93324 0.98264 0.94227 1.21680 1.02732 0.96498 0.97430 1.21689 1.02826 0.93337 1.00310 1.22209 0.95776 0.99716 0.93883 1.22323 0.97233 0.97425 0.98155 1.22369 0.95268 0.99459 0.98250 1.22379 0.96932 0.99199 0.98359 1.22217 0.93170 0.98903 1.00287 0.88387 0.92864 0.92963 0.91536 0.91521 0.75464 0.90451 1.00564 0.95192 0.94639 0.95972 0.91497 0.94909 0.90341 0.90490 0.92208 0.91714 0.86973 0.94364 0.91461 0.90321 0.95296 0.92877 0.91363 0.88622 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.04 0.82 6.48 71.98 0.47 1.29 16 3 O -0.39 -11.20 9.46 -130.64 -1.24 -12.44 16 4 C 0.09 2.42 2.21 29.85 0.07 2.49 16 5 H 0.11 2.18 7.77 -2.39 -0.02 2.16 16 6 C 0.52 18.93 5.55 87.66 0.49 19.41 16 7 O -0.57 -27.09 15.29 15.27 0.23 -26.85 16 8 N -0.69 -23.20 4.16 -435.16 -1.81 -25.01 16 9 C 0.13 5.14 2.66 46.55 0.12 5.26 16 10 H 0.07 3.01 7.51 -2.39 -0.02 2.99 16 11 C 0.16 7.88 5.28 87.03 0.46 8.34 16 12 N -0.61 -29.13 3.40 -691.01 -2.35 -31.48 16 13 C -0.22 -11.83 10.17 84.03 0.85 -10.97 16 14 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 15 C -0.04 -2.45 5.41 84.86 0.46 -1.99 16 16 N -0.93 -55.26 10.09 21.65 0.22 -55.04 16 17 Si 0.95 45.53 29.55 68.60 2.03 47.56 16 18 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 19 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 C 0.14 5.19 6.41 86.73 0.56 5.75 16 22 C -0.08 -2.32 0.80 -50.99 -0.04 -2.36 16 23 C -0.13 -3.61 8.41 71.98 0.61 -3.01 16 24 C -0.12 -2.72 8.11 71.98 0.58 -2.13 16 25 C -0.10 -2.54 2.89 -10.07 -0.03 -2.57 16 26 C -0.11 -3.96 6.04 31.69 0.19 -3.76 16 27 C -0.12 -4.19 6.91 31.91 0.22 -3.97 16 28 C -0.13 -4.80 6.83 31.67 0.22 -4.58 16 29 C -0.11 -2.83 5.96 31.32 0.19 -2.65 16 30 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.97 7.97 -2.39 -0.02 0.95 16 34 H 0.07 0.99 7.56 -2.39 -0.02 0.98 16 35 H 0.41 11.77 4.59 -92.71 -0.43 11.34 16 36 H 0.08 4.52 5.53 -2.39 -0.01 4.51 16 37 H -0.02 -1.32 7.75 -2.39 -0.02 -1.34 16 38 H 0.24 14.25 8.31 -92.71 -0.77 13.47 16 39 H 0.04 1.23 7.80 -2.39 -0.02 1.21 16 40 H 0.02 0.84 7.84 -2.39 -0.02 0.82 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.03 1.13 7.50 -2.39 -0.02 1.11 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.21 6.43 -2.39 -0.02 1.20 16 46 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.11 2.23 7.53 -2.39 -0.02 2.22 16 48 H 0.04 1.69 5.69 -2.39 -0.01 1.68 16 49 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 52 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 53 H 0.07 3.17 7.61 -2.38 -0.02 3.15 16 54 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 55 H 0.06 1.57 4.78 -2.39 -0.01 1.56 16 Total: -1.00 -72.55 411.38 3.67 -68.89 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.43 Total: 31.62 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 6.15 Total: 2.76 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -3.94 Total: -111.53 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.00 Total: -39.29 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -72.55 3.67 -68.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700572605.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.312 kcal (2) G-P(sol) polarization free energy of solvation -72.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds