Wall clock time and date at job start Tue Mar 31 2020 22:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00625 * 2 1 4 4 C 1.53002 * 109.47663 * 209.99801 * 3 2 1 5 5 C 1.52997 * 109.46885 * 300.00035 * 4 3 2 6 6 C 1.53001 * 109.47118 * 299.99291 * 5 4 3 7 7 C 1.52996 * 109.47643 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47469 * 175.00215 * 7 6 5 9 9 O 1.21283 * 119.99843 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99876 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00288 * 359.97438 * 10 8 7 12 12 C 1.46500 * 119.99744 * 179.97438 * 10 8 7 13 13 H 1.09002 * 109.47092 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.47023 * 239.99606 * 12 10 8 15 15 N 1.46507 * 109.46803 * 55.00453 * 14 12 10 16 16 C 1.36934 * 119.99498 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00844 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99803 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99884 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00444 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46851 * 90.00052 * 20 18 16 22 22 H 1.48492 * 109.47389 * 210.00329 * 20 18 16 23 23 H 1.48498 * 109.46929 * 330.00601 * 20 18 16 24 24 C 1.52997 * 109.47007 * 119.99814 * 12 10 8 25 25 C 1.53001 * 117.50135 * 248.74495 * 24 12 10 26 26 C 1.53000 * 117.49905 * 180.08505 * 24 12 10 27 27 C 1.53007 * 109.46732 * 60.00241 * 6 5 4 28 28 C 1.52996 * 109.47636 * 89.99411 * 3 2 1 29 29 H 1.09003 * 109.47020 * 300.01052 * 1 2 3 30 30 H 1.09009 * 109.46578 * 60.00143 * 1 2 3 31 31 H 1.08998 * 109.47384 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47019 * 329.99656 * 3 2 1 33 33 H 1.08992 * 109.47354 * 179.97438 * 4 3 2 34 34 H 1.09008 * 109.47017 * 59.99489 * 4 3 2 35 35 H 1.09000 * 109.47005 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47435 * 59.99263 * 5 4 3 37 37 H 1.08998 * 109.47219 * 300.00999 * 6 5 4 38 38 H 1.08999 * 109.46648 * 54.99951 * 7 6 5 39 39 H 1.09001 * 109.47130 * 295.00886 * 7 6 5 40 40 H 1.08998 * 109.47466 * 270.00414 * 11 10 8 41 41 H 1.09002 * 109.47260 * 30.00454 * 11 10 8 42 42 H 1.09000 * 109.47562 * 149.99903 * 11 10 8 43 43 H 1.09008 * 109.47142 * 174.99638 * 14 12 10 44 44 H 1.08990 * 109.47170 * 295.00136 * 14 12 10 45 45 H 0.96994 * 119.99737 * 359.97438 * 15 14 12 46 46 H 0.96998 * 119.99867 * 179.97438 * 19 18 16 47 47 H 1.09006 * 115.55153 * 34.41874 * 24 12 10 48 48 H 1.09002 * 117.49734 * 0.02562 * 25 24 12 49 49 H 1.08994 * 117.49847 * 145.02044 * 25 24 12 50 50 H 1.09001 * 117.49936 * 214.98052 * 26 24 12 51 51 H 1.08999 * 117.50086 * 359.97438 * 26 24 12 52 52 H 1.08992 * 109.47049 * 60.00264 * 27 6 5 53 53 H 1.08998 * 109.47212 * 180.02562 * 27 6 5 54 54 H 1.09002 * 109.47658 * 180.02562 * 28 3 2 55 55 H 1.09000 * 109.47158 * 300.00552 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2631 -0.7212 5 6 4.2927 0.2891 0.0001 6 6 4.5002 0.7550 1.4426 7 6 5.4343 -0.2186 2.1638 8 6 5.7367 0.3046 3.5443 9 8 5.2530 1.3533 3.9147 10 7 6.5454 -0.3923 4.3669 11 6 7.1301 -1.6588 3.9193 12 6 6.8397 0.1166 5.7088 13 1 6.3203 1.0628 5.8605 14 6 8.3474 0.3343 5.8523 15 7 8.8184 1.2123 4.7782 16 6 10.1430 1.5507 4.7020 17 1 10.8407 1.1701 5.4333 18 6 10.5895 2.3822 3.6840 19 7 9.7394 2.8457 2.7923 20 14 12.3966 2.8433 3.5794 21 1 13.1140 1.8476 2.7431 22 1 12.5293 4.1902 2.9685 23 1 12.9833 2.8585 4.9435 24 6 6.3691 -0.8974 6.7534 25 6 5.1776 -0.5071 7.6302 26 6 6.5868 -0.5466 8.2266 27 6 3.1514 0.7973 2.1638 28 6 2.2177 1.7714 1.4424 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.3451 1.9993 -0.5139 33 1 3.8022 2.2589 -0.7216 34 1 3.2113 0.9311 -1.7489 35 1 5.2534 0.2586 -0.5139 36 1 3.8493 -0.7067 0.0002 37 1 4.9435 1.7508 1.4426 38 1 6.3625 -0.3159 1.6007 39 1 4.9530 -1.1934 2.2420 40 1 6.4615 -2.4795 4.1788 41 1 7.2705 -1.6323 2.8387 42 1 8.0935 -1.8068 4.4072 43 1 8.5576 0.7958 6.8172 44 1 8.8606 -0.6251 5.7888 45 1 8.1919 1.5538 4.1212 46 1 10.0513 3.4270 2.0812 47 1 6.4612 -1.9450 6.4665 48 1 4.7287 0.4719 7.4626 49 1 4.4860 -1.2979 7.9205 50 1 6.8217 -1.3635 8.9091 51 1 7.0657 0.4063 8.4517 52 1 2.7081 -0.1983 2.1638 53 1 3.2991 1.1297 3.1913 54 1 2.6607 2.7673 1.4424 55 1 1.2569 1.8016 1.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700735460.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:11 Heat of formation + Delta-G solvation = -78.781480 kcal Electronic energy + Delta-G solvation = -31440.006488 eV Core-core repulsion = 27476.772581 eV Total energy + Delta-G solvation = -3963.233907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.35871 -40.19399 -38.79784 -37.08853 -36.54200 -35.68937 -33.36391 -32.70123 -31.65394 -30.05382 -28.09783 -27.57442 -27.06676 -25.84214 -23.82711 -23.59754 -22.91408 -22.62129 -21.09901 -20.52686 -19.96957 -19.14043 -18.11642 -17.38406 -17.18788 -16.91355 -16.63450 -16.41982 -16.22682 -15.82898 -15.46254 -15.29868 -15.01669 -14.82270 -14.77160 -14.57730 -14.15752 -13.94577 -13.70439 -13.47989 -13.23833 -13.18365 -13.10804 -12.94185 -12.84950 -12.81148 -12.71418 -12.41656 -12.32307 -12.19225 -12.10728 -12.09251 -11.96011 -11.76500 -11.45264 -11.34613 -11.26714 -10.98441 -10.94507 -10.89778 -10.55692 -10.23365 -9.46223 -8.99832 -7.93130 -5.23337 1.45017 1.47434 1.55821 1.79112 2.11731 2.54669 2.91195 2.94306 3.39141 3.58333 3.70240 3.78993 3.81594 3.95953 4.00212 4.10497 4.15601 4.21801 4.23455 4.30389 4.34634 4.43895 4.48760 4.52097 4.52957 4.58689 4.60984 4.64292 4.67672 4.72535 4.77636 4.78335 4.83966 4.87761 4.88958 4.94161 5.02056 5.04089 5.08685 5.10359 5.16180 5.20875 5.27223 5.29734 5.31512 5.37071 5.47150 5.55467 5.64060 5.73224 6.26225 6.37031 6.56224 7.32347 7.35979 8.08549 8.32887 9.29642 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.003441 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.259361 B = 8134.370000 C =10278.915093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.093 3.907 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.067 4.067 7 C -0.124 4.124 8 C 0.508 3.492 9 O -0.581 6.581 10 N -0.599 5.599 11 C 0.078 3.922 12 C 0.172 3.828 13 H 0.062 0.938 14 C 0.148 3.852 15 N -0.741 5.741 16 C -0.244 4.244 17 H 0.076 0.924 18 C -0.075 4.075 19 N -0.967 5.967 20 Si 0.975 3.025 21 H -0.283 1.283 22 H -0.298 1.298 23 H -0.270 1.270 24 C -0.162 4.162 25 C -0.172 4.172 26 C -0.163 4.163 27 C -0.101 4.101 28 C -0.138 4.138 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.035 0.965 45 H 0.372 0.628 46 H 0.249 0.751 47 H 0.125 0.875 48 H 0.075 0.925 49 H 0.115 0.885 50 H 0.120 0.880 51 H 0.083 0.917 52 H 0.065 0.935 53 H 0.050 0.950 54 H 0.060 0.940 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.579 -12.477 -2.186 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C 0.036 3.964 4 C -0.153 4.153 5 C -0.140 4.140 6 C -0.086 4.086 7 C -0.163 4.163 8 C 0.298 3.702 9 O -0.462 6.462 10 N -0.330 5.330 11 C -0.064 4.064 12 C 0.067 3.933 13 H 0.080 0.920 14 C 0.021 3.979 15 N -0.383 5.383 16 C -0.376 4.376 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.617 5.617 20 Si 0.804 3.196 21 H -0.210 1.210 22 H -0.225 1.225 23 H -0.195 1.195 24 C -0.181 4.181 25 C -0.209 4.209 26 C -0.201 4.201 27 C -0.138 4.138 28 C -0.175 4.175 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.053 0.947 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.143 0.857 48 H 0.093 0.907 49 H 0.133 0.867 50 H 0.139 0.861 51 H 0.101 0.899 52 H 0.083 0.917 53 H 0.068 0.932 54 H 0.079 0.921 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.529 -12.120 -1.924 21.398 hybrid contribution 0.842 1.266 -0.227 1.537 sum -16.687 -10.854 -2.151 20.023 Atomic orbital electron populations 1.22923 0.80421 1.03485 1.00346 1.87892 1.20494 1.27960 1.95059 1.22100 0.94968 0.84664 0.94693 1.21638 0.93881 1.00295 0.99501 1.21422 0.99327 0.99919 0.93291 1.20832 0.94945 0.97535 0.95244 1.21730 1.01723 1.01520 0.91366 1.21245 0.77476 0.83605 0.87883 1.90611 1.53665 1.24609 1.77297 1.47749 1.47215 1.23804 1.14248 1.21903 0.99114 0.84283 1.01144 1.20589 0.94545 0.96233 0.81890 0.92016 1.21078 0.92423 0.93432 0.90958 1.42501 1.06422 1.57466 1.31920 1.19618 0.86265 1.23000 1.08727 0.90569 1.25589 1.01936 1.01104 0.98090 1.69876 1.34983 1.39010 1.17872 0.85127 0.80015 0.76717 0.77791 1.21026 1.22507 1.19527 1.22434 1.04346 0.99778 0.91584 1.23019 0.91488 1.02760 1.03603 1.23003 0.98898 1.03653 0.94528 1.21408 0.94080 0.99602 0.98754 1.21977 0.99682 0.99123 0.96751 0.94094 0.93170 0.88717 0.90979 0.91020 0.90110 0.91869 0.90559 0.93958 0.88843 0.86587 0.89793 0.90619 0.91373 0.95744 0.94748 0.79657 0.94218 0.85670 0.90655 0.86692 0.86148 0.89854 0.91680 0.93175 0.92114 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.58 16 2 O -0.39 -8.20 9.00 -148.98 -1.34 -9.54 16 3 C 0.09 1.92 2.92 30.59 0.09 2.01 16 4 C -0.12 -2.44 5.66 30.59 0.17 -2.27 16 5 C -0.10 -2.40 5.06 30.59 0.15 -2.25 16 6 C -0.07 -1.95 1.84 -10.79 -0.02 -1.97 16 7 C -0.12 -3.59 3.73 29.85 0.11 -3.48 16 8 C 0.51 18.88 7.09 87.66 0.62 19.50 16 9 O -0.58 -26.35 13.29 -3.04 -0.04 -26.39 16 10 N -0.60 -20.23 2.24 -822.60 -1.85 -22.08 16 11 C 0.08 2.00 9.21 127.77 1.18 3.18 16 12 C 0.17 6.15 2.42 44.99 0.11 6.26 16 13 H 0.06 2.68 6.66 -2.39 -0.02 2.66 16 14 C 0.15 6.17 5.27 86.38 0.46 6.62 16 15 N -0.74 -39.58 5.43 -343.44 -1.87 -41.45 16 16 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 18 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 19 N -0.97 -61.43 13.06 21.65 0.28 -61.15 16 20 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 C -0.16 -4.26 5.21 -10.79 -0.06 -4.32 16 25 C -0.17 -4.09 10.18 30.62 0.31 -3.78 16 26 C -0.16 -3.79 9.80 30.62 0.30 -3.49 16 27 C -0.10 -2.86 4.80 30.60 0.15 -2.72 16 28 C -0.14 -3.35 5.63 30.59 0.17 -3.17 16 29 H 0.04 0.57 7.87 -2.39 -0.02 0.55 16 30 H 0.05 0.60 8.09 -2.38 -0.02 0.58 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.69 7.68 -2.39 -0.02 1.68 16 37 H 0.04 1.54 7.95 -2.39 -0.02 1.52 16 38 H 0.09 2.72 7.40 -2.39 -0.02 2.71 16 39 H 0.12 2.61 8.11 -2.39 -0.02 2.59 16 40 H 0.08 1.55 8.07 -2.39 -0.02 1.54 16 41 H 0.08 1.86 6.44 -2.39 -0.02 1.85 16 42 H 0.07 1.88 6.53 -2.39 -0.02 1.86 16 43 H 0.02 1.04 7.48 -2.38 -0.02 1.02 16 44 H 0.03 1.36 6.88 -2.39 -0.02 1.34 16 45 H 0.37 21.92 7.06 -92.71 -0.65 21.27 16 46 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.13 2.78 7.43 -2.38 -0.02 2.76 16 48 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 49 H 0.11 2.16 8.14 -2.39 -0.02 2.15 16 50 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.08 2.19 7.67 -2.39 -0.02 2.17 16 52 H 0.06 1.73 7.68 -2.39 -0.02 1.71 16 53 H 0.05 1.73 5.95 -2.39 -0.01 1.72 16 54 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 55 H 0.06 1.45 7.87 -2.39 -0.02 1.44 16 Total: -1.00 -74.37 420.83 3.69 -70.67 By element: Atomic # 1 Polarization: 45.95 SS G_CDS: 0.20 Total: 46.15 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 6.28 Total: -5.46 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -3.43 Total: -124.67 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -1.38 Total: -35.93 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -74.37 3.69 -70.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700735460.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.109 kcal (2) G-P(sol) polarization free energy of solvation -74.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds