Wall clock time and date at job start Tue Mar 31 2020 22:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00070 * 2 1 4 4 C 1.53002 * 109.46908 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46630 * 175.69369 * 4 3 2 6 6 C 1.50701 * 110.43436 * 297.05142 * 5 4 3 7 7 O 1.21274 * 119.99780 * 121.54876 * 6 5 4 8 8 N 1.34777 * 119.99839 * 301.54681 * 6 5 4 9 9 C 1.46500 * 119.99808 * 174.99265 * 8 6 5 10 10 H 1.09004 * 110.01388 * 34.94492 * 9 8 6 11 11 C 1.54265 * 110.03648 * 273.55081 * 9 8 6 12 12 C 1.54890 * 104.19464 * 217.10643 * 11 9 8 13 13 C 1.54890 * 102.74988 * 37.94096 * 12 11 9 14 14 H 1.08993 * 110.48611 * 80.73795 * 13 12 11 15 15 C 1.52997 * 110.48330 * 203.24633 * 13 12 11 16 16 N 1.46498 * 109.47307 * 291.75803 * 15 13 12 17 17 C 1.36947 * 119.99959 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99863 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99911 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99903 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47385 * 59.99770 * 21 19 17 23 23 H 1.48501 * 109.47146 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47117 * 299.99372 * 21 19 17 25 25 C 1.53876 * 110.03372 * 156.37959 * 9 8 6 26 26 C 1.54882 * 110.60103 * 59.67162 * 5 4 3 27 27 C 1.54892 * 102.75088 * 156.67245 * 26 5 4 28 28 C 1.54272 * 104.19332 * 322.06179 * 27 26 5 29 29 C 1.53873 * 106.60072 * 23.60450 * 28 27 26 30 30 H 1.09000 * 109.47275 * 59.99702 * 1 2 3 31 31 H 1.08996 * 109.47423 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46674 * 300.00059 * 1 2 3 33 33 H 1.09001 * 109.46765 * 60.00101 * 3 2 1 34 34 H 1.08992 * 109.47055 * 300.00004 * 3 2 1 35 35 H 1.08994 * 109.47281 * 55.69123 * 4 3 2 36 36 H 1.09003 * 109.47127 * 295.68804 * 4 3 2 37 37 H 0.96998 * 120.00111 * 354.99774 * 8 6 5 38 38 H 1.08998 * 110.48510 * 98.42459 * 11 9 8 39 39 H 1.08997 * 110.59627 * 335.83634 * 11 9 8 40 40 H 1.09002 * 110.75412 * 279.62579 * 12 11 9 41 41 H 1.09000 * 110.91653 * 156.33043 * 12 11 9 42 42 H 1.09003 * 109.47360 * 51.75933 * 15 13 12 43 43 H 1.09003 * 109.47012 * 171.75563 * 15 13 12 44 44 H 0.96999 * 119.99990 * 359.97438 * 16 15 13 45 45 H 0.97001 * 120.00116 * 180.02562 * 20 19 17 46 46 H 1.09005 * 110.02844 * 0.02562 * 25 9 8 47 47 H 1.08995 * 110.03483 * 238.57629 * 25 9 8 48 48 H 1.09000 * 110.76097 * 274.98690 * 26 5 4 49 49 H 1.09001 * 110.75953 * 38.36513 * 26 5 4 50 50 H 1.08990 * 110.48955 * 203.38056 * 27 26 5 51 51 H 1.08998 * 110.59807 * 80.78480 * 27 26 5 52 52 H 1.09004 * 110.02424 * 264.31781 * 28 27 26 53 53 H 1.09002 * 110.07051 * 142.91542 * 28 27 26 54 54 H 1.09001 * 110.03491 * 240.71956 * 29 28 27 55 55 H 1.09005 * 110.07264 * 119.30906 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1574 2.5783 -0.1090 6 6 3.7765 3.2243 -1.4161 7 8 3.1876 4.2845 -1.4197 8 7 4.0903 2.6238 -2.5812 9 6 3.6253 3.1943 -3.8479 10 1 3.6163 4.2826 -3.7859 11 6 2.2112 2.6720 -4.1753 12 6 2.2207 2.4884 -5.7133 13 6 3.6493 1.9550 -5.9850 14 1 3.7025 0.8858 -5.7804 15 6 4.0629 2.2437 -7.4294 16 7 3.2519 1.4328 -8.3410 17 6 3.4455 1.5229 -9.6937 18 1 4.1956 2.1920 -10.0885 19 6 2.6767 0.7549 -10.5575 20 7 1.7622 -0.0603 -10.0763 21 14 2.9411 0.8772 -12.4025 22 1 4.3383 0.4942 -12.7289 23 1 2.0019 -0.0382 -13.0990 24 1 2.6937 2.2725 -12.8466 25 6 4.5396 2.7386 -4.9985 26 6 3.7180 3.4653 1.0823 27 6 4.8450 4.5254 1.1532 28 6 6.1292 3.7346 0.8284 29 6 5.6920 2.4966 0.0259 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8516 0.5787 -0.8497 36 1 3.8629 0.7117 0.9253 37 1 4.6240 1.8138 -2.5810 38 1 1.4573 3.4030 -3.8830 39 1 2.0299 1.7189 -3.6785 40 1 2.0621 3.4419 -6.2171 41 1 1.4711 1.7603 -6.0229 42 1 3.9077 3.3004 -7.6475 43 1 5.1161 1.9962 -7.5621 44 1 2.5784 0.8315 -7.9864 45 1 1.2252 -0.5972 -10.6798 46 1 5.3291 2.0924 -4.6145 47 1 4.9745 3.6055 -5.4957 48 1 2.7565 3.9367 0.8790 49 1 3.6770 2.8831 2.0029 50 1 4.9035 4.9537 2.1537 51 1 4.6819 5.3086 0.4128 52 1 6.6215 3.4270 1.7510 53 1 6.8048 4.3472 0.2313 54 1 5.9721 1.5881 0.5590 55 1 6.1547 2.5079 -0.9609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700909450.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:35 Heat of formation + Delta-G solvation = -125.084868 kcal Electronic energy + Delta-G solvation = -30746.221475 eV Core-core repulsion = 26780.979702 eV Total energy + Delta-G solvation = -3965.241773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78674 -39.77596 -38.78883 -37.93177 -36.45041 -34.86419 -33.55418 -32.81722 -30.21223 -29.85795 -29.13969 -28.51279 -26.77868 -26.17920 -23.96903 -23.68931 -23.61573 -21.45841 -21.26591 -20.95485 -20.25139 -19.07823 -17.86581 -17.53304 -17.41865 -16.97716 -16.74052 -16.38867 -15.98126 -15.86883 -15.82809 -15.64658 -15.14313 -14.97920 -14.85849 -14.55537 -14.33720 -14.25222 -13.97309 -13.53579 -13.27894 -13.14079 -12.89304 -12.76401 -12.62267 -12.46330 -12.40352 -12.24753 -12.21108 -12.13035 -12.09693 -11.92832 -11.81855 -11.74712 -11.64679 -11.58738 -11.51700 -11.48409 -11.29303 -10.90253 -10.70534 -10.59317 -10.01427 -8.98103 -7.94619 -5.22947 1.46789 1.49981 1.56083 1.64588 2.19198 2.56471 2.70991 3.38546 3.45187 3.52894 3.58496 3.62925 3.76148 3.87924 4.05048 4.06181 4.16904 4.19755 4.35246 4.41383 4.42408 4.46604 4.48173 4.48903 4.51115 4.54447 4.57034 4.59795 4.67285 4.69937 4.75638 4.80927 4.82875 4.86005 4.94199 5.03266 5.04450 5.05721 5.07021 5.08640 5.12567 5.17804 5.23649 5.27992 5.36241 5.36956 5.47168 5.51339 5.53786 5.62827 6.15018 6.27985 6.58975 7.28467 7.34133 8.11714 8.34709 9.28899 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.002318 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.096074 B =12077.031493 C =13254.508163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.059 3.941 4 C -0.097 4.097 5 C -0.075 4.075 6 C 0.525 3.475 7 O -0.577 6.577 8 N -0.712 5.712 9 C 0.150 3.850 10 H 0.077 0.923 11 C -0.122 4.122 12 C -0.108 4.108 13 C -0.087 4.087 14 H 0.072 0.928 15 C 0.158 3.842 16 N -0.744 5.744 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.279 1.279 25 C -0.109 4.109 26 C -0.103 4.103 27 C -0.126 4.126 28 C -0.123 4.123 29 C -0.109 4.109 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.411 0.589 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.018 0.982 43 H 0.022 0.978 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.096 0.904 50 H 0.077 0.923 51 H 0.044 0.956 52 H 0.085 0.915 53 H 0.059 0.941 54 H 0.101 0.899 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 3.960 29.338 30.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.018 4.018 4 C -0.135 4.135 5 C -0.078 4.078 6 C 0.313 3.687 7 O -0.456 6.456 8 N -0.364 5.364 9 C 0.045 3.955 10 H 0.095 0.905 11 C -0.160 4.160 12 C -0.147 4.147 13 C -0.106 4.106 14 H 0.090 0.910 15 C 0.032 3.968 16 N -0.387 5.387 17 C -0.378 4.378 18 H 0.092 0.908 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.205 1.205 25 C -0.147 4.147 26 C -0.140 4.140 27 C -0.164 4.164 28 C -0.161 4.161 29 C -0.147 4.147 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.249 0.751 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.036 0.964 43 H 0.039 0.961 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.075 0.925 49 H 0.114 0.886 50 H 0.096 0.904 51 H 0.063 0.937 52 H 0.103 0.897 53 H 0.078 0.922 54 H 0.120 0.880 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.687 4.619 29.171 30.282 hybrid contribution -0.728 -0.190 -1.465 1.647 sum 5.959 4.429 27.706 28.683 Atomic orbital electron populations 1.22894 0.79928 1.03816 1.00424 1.87812 1.21018 1.28368 1.95515 1.22614 0.94909 0.84338 0.99941 1.21540 0.92202 0.94368 1.05349 1.21626 0.98606 0.95509 0.92103 1.20856 0.77483 0.84245 0.86134 1.90665 1.43128 1.23703 1.88093 1.46135 1.55137 1.29997 1.05135 1.21445 0.93068 0.98179 0.82808 0.90463 1.22657 0.96912 1.00997 0.95456 1.22363 0.96767 1.00498 0.95024 1.22011 0.95136 0.99901 0.93597 0.90967 1.20862 0.93628 0.93491 0.88822 1.42562 1.43751 1.49906 1.02487 1.19617 1.15060 1.18777 0.84356 0.90777 1.25571 0.99088 0.99755 1.02475 1.69810 1.26529 1.30723 1.35029 0.85210 0.77233 0.77217 0.80102 1.20274 1.22129 1.20491 1.22312 0.97435 1.00818 0.94157 1.22472 0.98709 0.96363 0.96486 1.22336 0.94764 0.97691 1.01564 1.22151 0.97202 0.95984 1.00734 1.22286 0.90289 1.00384 1.01747 0.94536 0.88271 0.92880 0.92310 0.95402 0.90107 0.87834 0.75148 0.92349 0.91196 0.92320 0.93031 0.96437 0.96055 0.79420 0.94016 0.88915 0.90120 0.92471 0.88594 0.90387 0.93717 0.89678 0.92237 0.88026 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -8.28 10.70 -148.98 -1.59 -9.87 16 3 C 0.06 1.05 5.50 71.98 0.40 1.45 16 4 C -0.10 -1.30 4.48 30.60 0.14 -1.16 16 5 C -0.08 -1.09 0.47 -51.85 -0.02 -1.12 16 6 C 0.53 11.22 5.13 87.66 0.45 11.67 16 7 O -0.58 -17.06 14.75 -3.01 -0.04 -17.11 16 8 N -0.71 -13.56 4.68 -439.10 -2.06 -15.62 16 9 C 0.15 3.50 3.27 45.72 0.15 3.65 16 10 H 0.08 2.06 7.54 -2.38 -0.02 2.04 16 11 C -0.12 -3.22 6.52 31.67 0.21 -3.01 16 12 C -0.11 -3.44 6.10 31.89 0.19 -3.24 16 13 C -0.09 -2.69 2.90 -9.72 -0.03 -2.72 16 14 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 15 C 0.16 6.27 5.55 86.38 0.48 6.75 16 16 N -0.74 -38.28 5.47 -343.45 -1.88 -40.16 16 17 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 18 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 20 N -0.97 -60.10 13.06 21.65 0.28 -59.81 16 21 Si 0.97 46.61 29.55 68.60 2.03 48.63 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 C -0.11 -2.48 6.14 31.32 0.19 -2.29 16 26 C -0.10 -1.53 4.43 31.88 0.14 -1.38 16 27 C -0.13 -1.86 6.52 31.67 0.21 -1.66 16 28 C -0.12 -1.38 6.80 31.32 0.21 -1.17 16 29 C -0.11 -1.13 5.91 31.32 0.19 -0.95 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.06 0.95 7.39 -2.39 -0.02 0.94 16 34 H 0.03 0.62 7.22 -2.39 -0.02 0.60 16 35 H 0.08 1.06 7.60 -2.39 -0.02 1.04 16 36 H 0.10 1.02 8.07 -2.39 -0.02 1.01 16 37 H 0.41 5.81 7.61 -92.71 -0.71 5.10 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 40 H 0.06 1.97 8.00 -2.39 -0.02 1.95 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.37 20.42 7.58 -92.71 -0.70 19.72 16 45 H 0.25 15.09 8.31 -92.71 -0.77 14.31 16 46 H 0.09 1.69 7.60 -2.38 -0.02 1.67 16 47 H 0.08 1.82 7.84 -2.39 -0.02 1.81 16 48 H 0.06 1.12 7.36 -2.39 -0.02 1.10 16 49 H 0.10 1.00 8.06 -2.39 -0.02 0.99 16 50 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.04 0.91 7.65 -2.39 -0.02 0.89 16 52 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 54 H 0.10 0.63 7.79 -2.39 -0.02 0.62 16 55 H 0.07 0.74 7.48 -2.38 -0.02 0.72 16 Total: -1.00 -71.54 424.23 1.64 -69.90 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -0.55 Total: 34.68 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.45 Total: -10.64 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -3.65 Total: -115.59 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.64 Total: -26.98 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -71.54 1.64 -69.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700909450.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.181 kcal (2) G-P(sol) polarization free energy of solvation -71.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds