Wall clock time and date at job start Tue Mar 31 2020 22:43:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42906 * 114.00070 * 2 1
4 4 C 1.53002 * 109.46908 * 180.02562 * 3 2 1
5 5 C 1.53002 * 109.46630 * 175.69369 * 4 3 2
6 6 C 1.50701 * 110.43436 * 297.05142 * 5 4 3
7 7 O 1.21274 * 119.99780 * 121.54876 * 6 5 4
8 8 N 1.34777 * 119.99839 * 301.54681 * 6 5 4
9 9 C 1.46500 * 119.99808 * 174.99265 * 8 6 5
10 10 H 1.09004 * 110.01388 * 34.94492 * 9 8 6
11 11 C 1.54265 * 110.03648 * 273.55081 * 9 8 6
12 12 C 1.54890 * 104.19464 * 217.10643 * 11 9 8
13 13 C 1.54890 * 102.74988 * 37.94096 * 12 11 9
14 14 H 1.08993 * 110.48611 * 80.73795 * 13 12 11
15 15 C 1.52997 * 110.48330 * 203.24633 * 13 12 11
16 16 N 1.46498 * 109.47307 * 291.75803 * 15 13 12
17 17 C 1.36947 * 119.99959 * 180.02562 * 16 15 13
18 18 H 1.07994 * 120.00099 * 359.97438 * 17 16 15
19 19 C 1.38814 * 119.99863 * 180.02562 * 17 16 15
20 20 N 1.31616 * 119.99911 * 359.97438 * 19 17 16
21 21 Si 1.86794 * 119.99903 * 180.02562 * 19 17 16
22 22 H 1.48502 * 109.47385 * 59.99770 * 21 19 17
23 23 H 1.48501 * 109.47146 * 179.97438 * 21 19 17
24 24 H 1.48506 * 109.47117 * 299.99372 * 21 19 17
25 25 C 1.53876 * 110.03372 * 156.37959 * 9 8 6
26 26 C 1.54882 * 110.60103 * 59.67162 * 5 4 3
27 27 C 1.54892 * 102.75088 * 156.67245 * 26 5 4
28 28 C 1.54272 * 104.19332 * 322.06179 * 27 26 5
29 29 C 1.53873 * 106.60072 * 23.60450 * 28 27 26
30 30 H 1.09000 * 109.47275 * 59.99702 * 1 2 3
31 31 H 1.08996 * 109.47423 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.46674 * 300.00059 * 1 2 3
33 33 H 1.09001 * 109.46765 * 60.00101 * 3 2 1
34 34 H 1.08992 * 109.47055 * 300.00004 * 3 2 1
35 35 H 1.08994 * 109.47281 * 55.69123 * 4 3 2
36 36 H 1.09003 * 109.47127 * 295.68804 * 4 3 2
37 37 H 0.96998 * 120.00111 * 354.99774 * 8 6 5
38 38 H 1.08998 * 110.48510 * 98.42459 * 11 9 8
39 39 H 1.08997 * 110.59627 * 335.83634 * 11 9 8
40 40 H 1.09002 * 110.75412 * 279.62579 * 12 11 9
41 41 H 1.09000 * 110.91653 * 156.33043 * 12 11 9
42 42 H 1.09003 * 109.47360 * 51.75933 * 15 13 12
43 43 H 1.09003 * 109.47012 * 171.75563 * 15 13 12
44 44 H 0.96999 * 119.99990 * 359.97438 * 16 15 13
45 45 H 0.97001 * 120.00116 * 180.02562 * 20 19 17
46 46 H 1.09005 * 110.02844 * 0.02562 * 25 9 8
47 47 H 1.08995 * 110.03483 * 238.57629 * 25 9 8
48 48 H 1.09000 * 110.76097 * 274.98690 * 26 5 4
49 49 H 1.09001 * 110.75953 * 38.36513 * 26 5 4
50 50 H 1.08990 * 110.48955 * 203.38056 * 27 26 5
51 51 H 1.08998 * 110.59807 * 80.78480 * 27 26 5
52 52 H 1.09004 * 110.02424 * 264.31781 * 28 27 26
53 53 H 1.09002 * 110.07051 * 142.91542 * 28 27 26
54 54 H 1.09001 * 110.03491 * 240.71956 * 29 28 27
55 55 H 1.09005 * 110.07264 * 119.30906 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1846 -0.0006
5 6 4.1574 2.5783 -0.1090
6 6 3.7765 3.2243 -1.4161
7 8 3.1876 4.2845 -1.4197
8 7 4.0903 2.6238 -2.5812
9 6 3.6253 3.1943 -3.8479
10 1 3.6163 4.2826 -3.7859
11 6 2.2112 2.6720 -4.1753
12 6 2.2207 2.4884 -5.7133
13 6 3.6493 1.9550 -5.9850
14 1 3.7025 0.8858 -5.7804
15 6 4.0629 2.2437 -7.4294
16 7 3.2519 1.4328 -8.3410
17 6 3.4455 1.5229 -9.6937
18 1 4.1956 2.1920 -10.0885
19 6 2.6767 0.7549 -10.5575
20 7 1.7622 -0.0603 -10.0763
21 14 2.9411 0.8772 -12.4025
22 1 4.3383 0.4942 -12.7289
23 1 2.0019 -0.0382 -13.0990
24 1 2.6937 2.2725 -12.8466
25 6 4.5396 2.7386 -4.9985
26 6 3.7180 3.4653 1.0823
27 6 4.8450 4.5254 1.1532
28 6 6.1292 3.7346 0.8284
29 6 5.6920 2.4966 0.0259
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.6886 1.8464 0.8900
34 1 1.6886 1.8464 -0.8899
35 1 3.8516 0.5787 -0.8497
36 1 3.8629 0.7117 0.9253
37 1 4.6240 1.8138 -2.5810
38 1 1.4573 3.4030 -3.8830
39 1 2.0299 1.7189 -3.6785
40 1 2.0621 3.4419 -6.2171
41 1 1.4711 1.7603 -6.0229
42 1 3.9077 3.3004 -7.6475
43 1 5.1161 1.9962 -7.5621
44 1 2.5784 0.8315 -7.9864
45 1 1.2252 -0.5972 -10.6798
46 1 5.3291 2.0924 -4.6145
47 1 4.9745 3.6055 -5.4957
48 1 2.7565 3.9367 0.8790
49 1 3.6770 2.8831 2.0029
50 1 4.9035 4.9537 2.1537
51 1 4.6819 5.3086 0.4128
52 1 6.6215 3.4270 1.7510
53 1 6.8048 4.3472 0.2313
54 1 5.9721 1.5881 0.5590
55 1 6.1547 2.5079 -0.9609
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700909450.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:43:35
Heat of formation + Delta-G solvation = -125.084868 kcal
Electronic energy + Delta-G solvation = -30746.221475 eV
Core-core repulsion = 26780.979702 eV
Total energy + Delta-G solvation = -3965.241773 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.78674 -39.77596 -38.78883 -37.93177 -36.45041 -34.86419 -33.55418 -32.81722
-30.21223 -29.85795 -29.13969 -28.51279 -26.77868 -26.17920 -23.96903 -23.68931
-23.61573 -21.45841 -21.26591 -20.95485 -20.25139 -19.07823 -17.86581 -17.53304
-17.41865 -16.97716 -16.74052 -16.38867 -15.98126 -15.86883 -15.82809 -15.64658
-15.14313 -14.97920 -14.85849 -14.55537 -14.33720 -14.25222 -13.97309 -13.53579
-13.27894 -13.14079 -12.89304 -12.76401 -12.62267 -12.46330 -12.40352 -12.24753
-12.21108 -12.13035 -12.09693 -11.92832 -11.81855 -11.74712 -11.64679 -11.58738
-11.51700 -11.48409 -11.29303 -10.90253 -10.70534 -10.59317 -10.01427 -8.98103
-7.94619 -5.22947 1.46789 1.49981 1.56083 1.64588 2.19198 2.56471
2.70991 3.38546 3.45187 3.52894 3.58496 3.62925 3.76148 3.87924
4.05048 4.06181 4.16904 4.19755 4.35246 4.41383 4.42408 4.46604
4.48173 4.48903 4.51115 4.54447 4.57034 4.59795 4.67285 4.69937
4.75638 4.80927 4.82875 4.86005 4.94199 5.03266 5.04450 5.05721
5.07021 5.08640 5.12567 5.17804 5.23649 5.27992 5.36241 5.36956
5.47168 5.51339 5.53786 5.62827 6.15018 6.27985 6.58975 7.28467
7.34133 8.11714 8.34709 9.28899
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.015380 B = 0.002318 C = 0.002112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1820.096074 B =12077.031493 C =13254.508163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.408 6.408
3 C 0.059 3.941
4 C -0.097 4.097
5 C -0.075 4.075
6 C 0.525 3.475
7 O -0.577 6.577
8 N -0.712 5.712
9 C 0.150 3.850
10 H 0.077 0.923
11 C -0.122 4.122
12 C -0.108 4.108
13 C -0.087 4.087
14 H 0.072 0.928
15 C 0.158 3.842
16 N -0.744 5.744
17 C -0.246 4.246
18 H 0.074 0.926
19 C -0.077 4.077
20 N -0.970 5.970
21 Si 0.974 3.026
22 H -0.277 1.277
23 H -0.295 1.295
24 H -0.279 1.279
25 C -0.109 4.109
26 C -0.103 4.103
27 C -0.126 4.126
28 C -0.123 4.123
29 C -0.109 4.109
30 H 0.036 0.964
31 H 0.099 0.901
32 H 0.053 0.947
33 H 0.059 0.941
34 H 0.028 0.972
35 H 0.080 0.920
36 H 0.103 0.897
37 H 0.411 0.589
38 H 0.058 0.942
39 H 0.069 0.931
40 H 0.058 0.942
41 H 0.051 0.949
42 H 0.018 0.982
43 H 0.022 0.978
44 H 0.374 0.626
45 H 0.251 0.749
46 H 0.092 0.908
47 H 0.080 0.920
48 H 0.057 0.943
49 H 0.096 0.904
50 H 0.077 0.923
51 H 0.044 0.956
52 H 0.085 0.915
53 H 0.059 0.941
54 H 0.101 0.899
55 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.899 3.960 29.338 30.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.327 6.327
3 C -0.018 4.018
4 C -0.135 4.135
5 C -0.078 4.078
6 C 0.313 3.687
7 O -0.456 6.456
8 N -0.364 5.364
9 C 0.045 3.955
10 H 0.095 0.905
11 C -0.160 4.160
12 C -0.147 4.147
13 C -0.106 4.106
14 H 0.090 0.910
15 C 0.032 3.968
16 N -0.387 5.387
17 C -0.378 4.378
18 H 0.092 0.908
19 C -0.269 4.269
20 N -0.621 5.621
21 Si 0.802 3.198
22 H -0.203 1.203
23 H -0.221 1.221
24 H -0.205 1.205
25 C -0.147 4.147
26 C -0.140 4.140
27 C -0.164 4.164
28 C -0.161 4.161
29 C -0.147 4.147
30 H 0.055 0.945
31 H 0.117 0.883
32 H 0.071 0.929
33 H 0.077 0.923
34 H 0.046 0.954
35 H 0.099 0.901
36 H 0.122 0.878
37 H 0.249 0.751
38 H 0.077 0.923
39 H 0.088 0.912
40 H 0.077 0.923
41 H 0.070 0.930
42 H 0.036 0.964
43 H 0.039 0.961
44 H 0.206 0.794
45 H 0.060 0.940
46 H 0.111 0.889
47 H 0.099 0.901
48 H 0.075 0.925
49 H 0.114 0.886
50 H 0.096 0.904
51 H 0.063 0.937
52 H 0.103 0.897
53 H 0.078 0.922
54 H 0.120 0.880
55 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 6.687 4.619 29.171 30.282
hybrid contribution -0.728 -0.190 -1.465 1.647
sum 5.959 4.429 27.706 28.683
Atomic orbital electron populations
1.22894 0.79928 1.03816 1.00424 1.87812 1.21018 1.28368 1.95515
1.22614 0.94909 0.84338 0.99941 1.21540 0.92202 0.94368 1.05349
1.21626 0.98606 0.95509 0.92103 1.20856 0.77483 0.84245 0.86134
1.90665 1.43128 1.23703 1.88093 1.46135 1.55137 1.29997 1.05135
1.21445 0.93068 0.98179 0.82808 0.90463 1.22657 0.96912 1.00997
0.95456 1.22363 0.96767 1.00498 0.95024 1.22011 0.95136 0.99901
0.93597 0.90967 1.20862 0.93628 0.93491 0.88822 1.42562 1.43751
1.49906 1.02487 1.19617 1.15060 1.18777 0.84356 0.90777 1.25571
0.99088 0.99755 1.02475 1.69810 1.26529 1.30723 1.35029 0.85210
0.77233 0.77217 0.80102 1.20274 1.22129 1.20491 1.22312 0.97435
1.00818 0.94157 1.22472 0.98709 0.96363 0.96486 1.22336 0.94764
0.97691 1.01564 1.22151 0.97202 0.95984 1.00734 1.22286 0.90289
1.00384 1.01747 0.94536 0.88271 0.92880 0.92310 0.95402 0.90107
0.87834 0.75148 0.92349 0.91196 0.92320 0.93031 0.96437 0.96055
0.79420 0.94016 0.88915 0.90120 0.92471 0.88594 0.90387 0.93717
0.89678 0.92237 0.88026 0.91081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.41 11.01 113.37 1.25 1.66 16
2 O -0.41 -8.28 10.70 -148.98 -1.59 -9.87 16
3 C 0.06 1.05 5.50 71.98 0.40 1.45 16
4 C -0.10 -1.30 4.48 30.60 0.14 -1.16 16
5 C -0.08 -1.09 0.47 -51.85 -0.02 -1.12 16
6 C 0.53 11.22 5.13 87.66 0.45 11.67 16
7 O -0.58 -17.06 14.75 -3.01 -0.04 -17.11 16
8 N -0.71 -13.56 4.68 -439.10 -2.06 -15.62 16
9 C 0.15 3.50 3.27 45.72 0.15 3.65 16
10 H 0.08 2.06 7.54 -2.38 -0.02 2.04 16
11 C -0.12 -3.22 6.52 31.67 0.21 -3.01 16
12 C -0.11 -3.44 6.10 31.89 0.19 -3.24 16
13 C -0.09 -2.69 2.90 -9.72 -0.03 -2.72 16
14 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
15 C 0.16 6.27 5.55 86.38 0.48 6.75 16
16 N -0.74 -38.28 5.47 -343.45 -1.88 -40.16 16
17 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16
18 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16
19 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16
20 N -0.97 -60.10 13.06 21.65 0.28 -59.81 16
21 Si 0.97 46.61 29.55 68.60 2.03 48.63 16
22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
23 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16
24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
25 C -0.11 -2.48 6.14 31.32 0.19 -2.29 16
26 C -0.10 -1.53 4.43 31.88 0.14 -1.38 16
27 C -0.13 -1.86 6.52 31.67 0.21 -1.66 16
28 C -0.12 -1.38 6.80 31.32 0.21 -1.17 16
29 C -0.11 -1.13 5.91 31.32 0.19 -0.95 16
30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16
32 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16
33 H 0.06 0.95 7.39 -2.39 -0.02 0.94 16
34 H 0.03 0.62 7.22 -2.39 -0.02 0.60 16
35 H 0.08 1.06 7.60 -2.39 -0.02 1.04 16
36 H 0.10 1.02 8.07 -2.39 -0.02 1.01 16
37 H 0.41 5.81 7.61 -92.71 -0.71 5.10 16
38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
39 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16
40 H 0.06 1.97 8.00 -2.39 -0.02 1.95 16
41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
42 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16
43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16
44 H 0.37 20.42 7.58 -92.71 -0.70 19.72 16
45 H 0.25 15.09 8.31 -92.71 -0.77 14.31 16
46 H 0.09 1.69 7.60 -2.38 -0.02 1.67 16
47 H 0.08 1.82 7.84 -2.39 -0.02 1.81 16
48 H 0.06 1.12 7.36 -2.39 -0.02 1.10 16
49 H 0.10 1.00 8.06 -2.39 -0.02 0.99 16
50 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
51 H 0.04 0.91 7.65 -2.39 -0.02 0.89 16
52 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16
53 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
54 H 0.10 0.63 7.79 -2.39 -0.02 0.62 16
55 H 0.07 0.74 7.48 -2.38 -0.02 0.72 16
Total: -1.00 -71.54 424.23 1.64 -69.90
By element:
Atomic # 1 Polarization: 35.23 SS G_CDS: -0.55 Total: 34.68 kcal
Atomic # 6 Polarization: -16.10 SS G_CDS: 5.45 Total: -10.64 kcal
Atomic # 7 Polarization: -111.94 SS G_CDS: -3.65 Total: -115.59 kcal
Atomic # 8 Polarization: -25.34 SS G_CDS: -1.64 Total: -26.98 kcal
Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal
Total: -71.54 1.64 -69.90 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700909450.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.181 kcal
(2) G-P(sol) polarization free energy of solvation -71.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.725 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.085 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds