Wall clock time and date at job start Tue Mar 31 2020 22:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00480 * 2 1 4 4 H 1.07999 * 120.00328 * 202.29948 * 3 2 1 5 5 C 1.38809 * 119.99759 * 22.30540 * 3 2 1 6 6 N 1.31608 * 120.00422 * 12.24550 * 5 3 2 7 7 Si 1.86810 * 119.99641 * 192.24704 * 5 3 2 8 8 H 1.48499 * 109.47152 * 59.99976 * 7 5 3 9 9 H 1.48503 * 109.46786 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47150 * 299.99823 * 7 5 3 11 11 C 1.46504 * 119.99656 * 179.97438 * 2 1 3 12 12 C 1.53007 * 109.47097 * 270.00109 * 11 2 1 13 13 H 1.09003 * 109.46895 * 60.00142 * 12 11 2 14 14 O 1.42901 * 109.47209 * 300.00175 * 12 11 2 15 15 C 1.53001 * 109.47145 * 179.97438 * 12 11 2 16 16 N 1.46498 * 109.47231 * 184.99932 * 15 12 11 17 17 C 1.46497 * 119.99901 * 90.00065 * 16 15 12 18 18 C 1.34773 * 120.00099 * 270.00676 * 16 15 12 19 19 O 1.21281 * 120.00061 * 4.59960 * 18 16 15 20 20 C 1.50696 * 119.99823 * 184.60320 * 18 16 15 21 21 C 1.52997 * 115.55233 * 86.84696 * 20 18 16 22 22 C 1.53005 * 109.47343 * 59.71957 * 21 20 18 23 23 C 1.53002 * 109.47133 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.47056 * 59.99932 * 23 22 21 25 25 C 1.53005 * 109.47205 * 300.00023 * 24 23 22 26 26 C 1.52996 * 109.47210 * 59.99733 * 25 24 23 27 27 C 1.52997 * 117.49919 * 301.13523 * 20 18 16 28 28 C 1.52999 * 117.49694 * 232.51270 * 20 18 16 29 29 H 1.08998 * 109.47257 * 275.04332 * 1 2 3 30 30 H 1.09000 * 109.46524 * 35.03707 * 1 2 3 31 31 H 1.08992 * 109.47483 * 155.03421 * 1 2 3 32 32 H 0.96998 * 120.00430 * 180.02562 * 6 5 3 33 33 H 1.08991 * 109.47347 * 150.00129 * 11 2 1 34 34 H 1.09004 * 109.47277 * 30.00012 * 11 2 1 35 35 H 0.96697 * 113.99478 * 299.99912 * 14 12 11 36 36 H 1.08999 * 109.46776 * 64.99926 * 15 12 11 37 37 H 1.09000 * 109.47145 * 305.00322 * 15 12 11 38 38 H 1.09001 * 109.47437 * 90.77858 * 17 16 15 39 39 H 1.09002 * 109.47410 * 210.77941 * 17 16 15 40 40 H 1.09006 * 109.47089 * 330.77681 * 17 16 15 41 41 H 1.09004 * 109.47647 * 179.71980 * 21 20 18 42 42 H 1.08996 * 109.46742 * 299.99927 * 22 21 20 43 43 H 1.08996 * 109.46601 * 60.00204 * 22 21 20 44 44 H 1.08999 * 109.46977 * 300.00255 * 23 22 21 45 45 H 1.08996 * 109.46923 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47227 * 180.02562 * 24 23 22 47 47 H 1.08995 * 109.47034 * 59.99810 * 24 23 22 48 48 H 1.09004 * 109.46769 * 299.99713 * 25 24 23 49 49 H 1.08996 * 109.47125 * 180.02562 * 25 24 23 50 50 H 1.08996 * 109.47000 * 179.97438 * 26 25 24 51 51 H 1.09009 * 109.46582 * 60.00419 * 26 25 24 52 52 H 1.08999 * 117.50099 * 359.97438 * 27 20 18 53 53 H 1.09000 * 117.50118 * 145.02617 * 27 20 18 54 54 H 1.09007 * 117.50170 * 214.98000 * 28 20 18 55 55 H 1.08997 * 117.50059 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1692 1.2208 -0.3549 5 6 1.5336 2.3430 0.4563 6 7 0.3925 2.2681 1.1076 7 14 2.3244 4.0068 0.1457 8 1 2.4598 4.2252 -1.3169 9 1 1.4739 5.0755 0.7287 10 1 3.6675 4.0422 0.7780 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 1 1.4999 -1.8399 1.9572 14 8 3.2247 -0.7137 2.1166 15 6 3.2167 -3.0353 1.4439 16 7 3.3566 -3.5177 2.8201 17 6 2.3317 -4.3904 3.3980 18 6 4.4281 -3.1586 3.5545 19 8 5.2336 -2.3703 3.1066 20 6 4.6253 -3.7367 4.9321 21 6 5.3681 -5.0732 4.9868 22 6 6.7627 -4.9070 4.3797 23 6 7.5051 -6.2437 4.4339 24 6 6.7249 -7.2930 3.6395 25 6 5.3303 -7.4592 4.2466 26 6 4.5878 -6.1226 4.1925 27 6 3.5196 -3.4999 5.9626 28 6 4.8508 -2.7556 6.0843 29 1 -0.3634 0.0903 1.0237 30 1 -0.3632 0.8415 -0.5900 31 1 -0.3634 -0.9315 -0.4337 32 1 -0.0382 3.0767 1.4261 33 1 3.1498 -1.1388 -0.5133 34 1 1.6083 -2.0287 -0.5129 35 1 4.0871 -0.5455 1.7130 36 1 4.2050 -2.8849 1.0094 37 1 2.6690 -3.7709 0.8549 38 1 2.5944 -5.4319 3.2125 39 1 2.2704 -4.2170 4.4724 40 1 1.3674 -4.1717 2.9392 41 1 5.4595 -5.3960 6.0239 42 1 6.6713 -4.5843 3.3426 43 1 7.3183 -4.1591 4.9454 44 1 7.5964 -6.5668 5.4708 45 1 8.4987 -6.1251 4.0018 46 1 7.2535 -8.2454 3.6784 47 1 6.6335 -6.9698 2.6026 48 1 5.4216 -7.7825 5.2836 49 1 4.7746 -8.2071 3.6810 50 1 3.5942 -6.2412 4.6246 51 1 4.4965 -5.7995 3.1554 52 1 2.6496 -2.9255 5.6443 53 1 3.3209 -4.2963 6.6798 54 1 5.5280 -3.0625 6.8815 55 1 4.8569 -1.6921 5.8458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700968825.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:30 Heat of formation + Delta-G solvation = -65.191507 kcal Electronic energy + Delta-G solvation = -32047.980770 eV Core-core repulsion = 28085.336168 eV Total energy + Delta-G solvation = -3962.644601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75302 -39.48624 -38.53250 -37.14045 -36.73179 -35.92436 -33.28177 -31.71745 -31.46261 -31.01288 -28.18346 -27.86445 -27.24449 -24.87217 -23.93839 -23.71875 -22.94336 -22.45421 -21.99818 -20.79576 -19.44090 -18.77938 -17.82173 -17.68935 -16.84378 -16.80376 -16.57871 -15.98002 -15.94522 -15.57193 -15.46427 -15.16310 -15.07996 -14.91872 -14.73344 -14.38325 -14.11884 -13.80380 -13.71581 -13.53296 -13.50894 -13.08825 -12.97687 -12.86465 -12.76904 -12.66657 -12.53419 -12.34361 -12.20658 -12.12486 -12.05164 -11.92916 -11.90578 -11.83691 -11.68596 -11.40595 -11.34308 -11.04671 -10.82344 -10.67644 -10.57867 -10.42884 -9.48521 -8.68437 -7.78416 -5.22922 1.43329 1.46099 1.51459 1.73032 2.06790 2.52957 2.68661 3.36093 3.45009 3.54964 3.65530 3.79602 3.82553 3.84968 4.00805 4.04431 4.09212 4.25554 4.28573 4.35008 4.44541 4.46099 4.51525 4.59714 4.61025 4.64196 4.66401 4.67932 4.70168 4.71445 4.78853 4.84046 4.86494 4.92296 4.94100 4.97491 5.11975 5.17351 5.20318 5.27182 5.29210 5.30289 5.32312 5.32763 5.41627 5.48397 5.59034 5.61843 5.65154 5.73618 6.36029 6.50592 7.01581 7.20427 7.33048 7.91311 8.32911 9.25807 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.002861 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.654506 B = 9786.145742 C =10094.244820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.609 5.609 3 C -0.239 4.239 4 H 0.065 0.935 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.962 3.038 8 H -0.276 1.276 9 H -0.296 1.296 10 H -0.283 1.283 11 C 0.120 3.880 12 C 0.082 3.918 13 H 0.065 0.935 14 O -0.558 6.558 15 C 0.093 3.907 16 N -0.603 5.603 17 C 0.056 3.944 18 C 0.548 3.452 19 O -0.576 6.576 20 C -0.149 4.149 21 C -0.029 4.029 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.148 4.148 28 C -0.159 4.159 29 H -0.002 1.002 30 H 0.015 0.985 31 H 0.036 0.964 32 H 0.243 0.757 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.363 0.637 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.032 0.968 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.048 0.952 52 H 0.086 0.914 53 H 0.139 0.861 54 H 0.125 0.875 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 -25.952 9.741 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.332 5.332 3 C -0.370 4.370 4 H 0.082 0.918 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.792 3.208 8 H -0.202 1.202 9 H -0.222 1.222 10 H -0.209 1.209 11 C -0.007 4.007 12 C 0.019 3.981 13 H 0.083 0.917 14 O -0.362 6.362 15 C -0.031 4.031 16 N -0.335 5.335 17 C -0.086 4.086 18 C 0.337 3.663 19 O -0.456 6.456 20 C -0.152 4.152 21 C -0.047 4.047 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.185 4.185 28 C -0.196 4.196 29 H 0.016 0.984 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.209 0.791 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.104 0.896 51 H 0.067 0.933 52 H 0.105 0.895 53 H 0.157 0.843 54 H 0.143 0.857 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.779 -25.413 9.909 28.364 hybrid contribution 0.638 1.859 -0.653 2.071 sum 8.417 -23.554 9.256 26.671 Atomic orbital electron populations 1.20538 0.82689 0.96109 0.97355 1.44080 1.02056 1.01548 1.85484 1.19305 0.97586 0.86373 1.33742 0.91762 1.25679 0.98708 1.01567 0.99100 1.70219 1.19912 1.26920 1.41769 0.85410 0.77435 0.80214 0.77783 1.20248 1.22224 1.20950 1.21674 0.96592 0.87980 0.94480 1.22957 0.93241 0.86685 0.95263 0.91676 1.86582 1.32566 1.60652 1.56363 1.22194 1.01314 0.96359 0.83271 1.47757 1.22640 1.49465 1.13592 1.22506 0.90587 0.94661 1.00843 1.19949 0.80275 0.79653 0.86427 1.90632 1.46289 1.35625 1.73012 1.21459 1.06179 0.99528 0.88009 1.20635 0.93142 0.89502 1.01454 1.21488 0.95974 0.97744 0.99682 1.21510 0.98239 0.94102 1.01292 1.21559 0.96615 0.98926 0.98814 1.21521 0.95182 0.96524 1.01905 1.21841 0.99541 0.94516 0.99620 1.23238 0.91613 1.03464 1.00149 1.23039 1.00946 0.96694 0.98954 0.98396 0.96568 0.94577 0.94784 0.93302 0.90603 0.79092 0.91335 0.86948 0.89688 0.89251 0.91013 0.88127 0.94933 0.92943 0.90552 0.92445 0.90950 0.93621 0.90627 0.91101 0.89644 0.93294 0.89543 0.84292 0.85728 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.03 9.01 127.77 1.15 10.18 16 2 N -0.61 -31.31 2.87 -726.95 -2.09 -33.40 16 3 C -0.24 -13.73 9.02 84.03 0.76 -12.98 16 4 H 0.06 3.62 7.85 -2.91 -0.02 3.59 16 5 C -0.06 -3.35 5.12 84.86 0.43 -2.91 16 6 N -0.94 -58.80 10.63 21.65 0.23 -58.57 16 7 Si 0.96 48.24 29.57 68.60 2.03 50.27 16 8 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 9 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 10 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 11 C 0.12 4.75 5.43 86.38 0.47 5.22 16 12 C 0.08 3.10 3.48 30.60 0.11 3.20 16 13 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 14 O -0.56 -26.39 11.35 -136.93 -1.55 -27.95 16 15 C 0.09 2.65 5.10 86.38 0.44 3.09 16 16 N -0.60 -15.96 2.50 -846.77 -2.11 -18.07 16 17 C 0.06 1.00 8.72 127.77 1.11 2.11 16 18 C 0.55 16.69 5.07 87.66 0.44 17.14 16 19 O -0.58 -22.96 15.20 9.01 0.14 -22.82 16 20 C -0.15 -3.26 0.89 -52.93 -0.05 -3.31 16 21 C -0.03 -0.47 2.01 -10.79 -0.02 -0.49 16 22 C -0.11 -2.23 5.02 30.60 0.15 -2.08 16 23 C -0.11 -1.68 5.92 30.60 0.18 -1.50 16 24 C -0.12 -1.60 5.92 30.60 0.18 -1.42 16 25 C -0.11 -1.22 5.92 30.59 0.18 -1.04 16 26 C -0.12 -1.59 3.37 30.59 0.10 -1.49 16 27 C -0.15 -2.65 7.77 30.59 0.24 -2.41 16 28 C -0.16 -3.55 9.92 30.59 0.30 -3.25 16 29 H 0.00 -0.13 7.36 -2.39 -0.02 -0.15 16 30 H 0.02 0.87 7.27 -2.39 -0.02 0.85 16 31 H 0.04 1.49 7.84 -2.39 -0.02 1.48 16 32 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.05 1.91 8.03 -2.39 -0.02 1.89 16 34 H 0.08 2.50 7.86 -2.38 -0.02 2.48 16 35 H 0.36 16.77 8.64 -74.06 -0.64 16.13 16 36 H 0.07 2.15 7.49 -2.39 -0.02 2.13 16 37 H 0.11 2.40 8.07 -2.39 -0.02 2.38 16 38 H 0.08 1.11 5.43 -2.39 -0.01 1.09 16 39 H 0.09 1.46 4.10 -2.39 -0.01 1.45 16 40 H 0.07 1.26 8.07 -2.38 -0.02 1.24 16 41 H 0.10 1.23 8.11 -2.38 -0.02 1.21 16 42 H 0.03 0.86 7.41 -2.39 -0.02 0.84 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.09 0.86 6.85 -2.39 -0.02 0.84 16 51 H 0.05 0.86 6.26 -2.38 -0.01 0.85 16 52 H 0.09 1.87 7.23 -2.39 -0.02 1.85 16 53 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 54 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 55 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -77.55 412.88 3.05 -74.50 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.22 Total: 27.97 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.19 Total: 8.07 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -3.97 Total: -110.05 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -1.42 Total: -50.77 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -77.55 3.05 -74.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700968825.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.312 kcal (2) G-P(sol) polarization free energy of solvation -77.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds