Wall clock time and date at job start Tue Mar 31 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 120.00389 * 2 1 4 4 H 1.07999 * 120.00313 * 204.11071 * 3 2 1 5 5 C 1.38812 * 119.99844 * 24.11185 * 3 2 1 6 6 N 1.31617 * 120.00001 * 10.21197 * 5 3 2 7 7 Si 1.86803 * 119.99712 * 190.21748 * 5 3 2 8 8 H 1.48498 * 109.47388 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.46913 * 119.99889 * 7 5 3 10 10 H 1.48500 * 109.46688 * 239.99368 * 7 5 3 11 11 C 1.46500 * 119.99583 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47531 * 89.99830 * 11 2 1 13 13 O 1.42900 * 109.46728 * 64.99937 * 12 11 2 14 14 C 1.42909 * 113.99661 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.46825 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.46813 * 65.00434 * 15 14 13 17 17 C 1.46507 * 119.99915 * 269.99662 * 16 15 14 18 18 C 1.34777 * 120.00094 * 89.99835 * 16 15 14 19 19 O 1.21282 * 120.00066 * 355.23377 * 18 16 15 20 20 C 1.50703 * 119.99748 * 175.23275 * 18 16 15 21 21 H 1.08996 * 108.70090 * 29.94707 * 20 18 16 22 22 C 1.51582 * 108.73064 * 148.04883 * 20 18 16 23 23 C 1.51054 * 111.67164 * 187.96372 * 22 20 18 24 24 C 1.53673 * 109.81257 * 269.31287 * 23 22 20 25 25 H 1.08993 * 115.93977 * 288.22168 * 24 23 22 26 26 C 1.53002 * 117.70425 * 140.34957 * 24 23 22 27 27 C 1.52995 * 60.31701 * 255.12291 * 26 24 23 28 28 H 1.08997 * 118.70818 * 252.32000 * 27 26 24 29 29 C 1.53674 * 117.08684 * 105.16141 * 27 26 24 30 30 C 1.51581 * 108.73346 * 271.72724 * 20 18 16 31 31 H 1.08997 * 109.47378 * 266.04687 * 1 2 3 32 32 H 1.09003 * 109.46631 * 26.04112 * 1 2 3 33 33 H 1.08995 * 109.47243 * 146.03877 * 1 2 3 34 34 H 0.97004 * 119.99679 * 180.02562 * 6 5 3 35 35 H 1.09007 * 109.47128 * 329.99716 * 11 2 1 36 36 H 1.09005 * 109.47281 * 210.00249 * 11 2 1 37 37 H 1.09002 * 109.47283 * 305.00106 * 12 11 2 38 38 H 1.09001 * 109.47234 * 184.99648 * 12 11 2 39 39 H 1.08999 * 109.47185 * 300.00223 * 14 13 12 40 40 H 1.09005 * 109.46638 * 60.00288 * 14 13 12 41 41 H 1.08998 * 109.46826 * 185.00423 * 15 14 13 42 42 H 1.08996 * 109.46975 * 304.99979 * 15 14 13 43 43 H 1.08994 * 109.47100 * 95.08062 * 17 16 15 44 44 H 1.09000 * 109.46505 * 215.08632 * 17 16 15 45 45 H 1.08999 * 109.46752 * 335.07789 * 17 16 15 46 46 H 1.08997 * 109.08043 * 308.70291 * 22 20 18 47 47 H 1.08994 * 109.08268 * 67.67826 * 22 20 18 48 48 H 1.09011 * 109.61699 * 148.91226 * 23 22 20 49 49 H 1.08993 * 108.72479 * 29.17426 * 23 22 20 50 50 H 1.09001 * 117.46854 * 147.54208 * 26 24 23 51 51 H 1.09005 * 117.46808 * 2.70391 * 26 24 23 52 52 H 1.09000 * 109.56158 * 99.40588 * 29 27 26 53 53 H 1.09007 * 109.64992 * 339.13741 * 29 27 26 54 54 H 1.08999 * 109.08171 * 292.31297 * 30 20 18 55 55 H 1.09006 * 109.07857 * 51.28908 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1591 1.2266 -0.3821 5 6 1.5466 2.3355 0.4911 6 7 0.4030 2.2540 1.1375 7 14 2.3580 3.9985 0.2344 8 1 3.6268 3.8196 -0.5161 9 1 1.4459 4.8804 -0.5374 10 1 2.6463 4.6173 1.5532 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 8 3.3209 -0.7718 -2.0817 14 6 3.6249 -1.0928 -3.4406 15 6 4.5559 -0.0261 -4.0206 16 7 5.8402 -0.0641 -3.3168 17 6 6.0449 0.7575 -2.1212 18 6 6.8334 -0.8549 -3.7692 19 8 6.6369 -1.5992 -4.7063 20 6 8.1883 -0.8141 -3.1106 21 1 8.0584 -0.5559 -2.0596 22 6 8.8133 -2.1924 -3.1971 23 6 10.0874 -2.2788 -2.3903 24 6 11.2891 -1.9077 -3.2732 25 1 11.5687 -2.6402 -4.0303 26 6 12.3984 -1.0611 -2.6456 27 6 11.4156 -0.4166 -3.6252 28 1 11.7679 -0.1519 -4.6221 29 6 10.3326 0.4971 -3.0305 30 6 9.0214 0.2626 -3.7771 31 1 -0.3634 -0.0708 1.0252 32 1 -0.3633 0.9234 -0.4512 33 1 -0.3633 -0.8523 -0.5741 34 1 -0.0187 3.0575 1.4804 35 1 1.6083 -2.0286 0.5130 36 1 3.1499 -1.1388 0.5134 37 1 1.5061 -1.7542 -1.9823 38 1 2.9180 -2.6955 -1.4449 39 1 4.1149 -2.0655 -3.4834 40 1 2.7029 -1.1245 -4.0214 41 1 4.7166 -0.2217 -5.0808 42 1 4.1029 0.9575 -3.8972 43 1 5.8370 0.1629 -1.2317 44 1 7.0773 1.1060 -2.0923 45 1 5.3728 1.6151 -2.1503 46 1 8.1027 -2.9298 -2.8237 47 1 9.0417 -2.4153 -4.2392 48 1 10.2125 -3.2932 -2.0113 49 1 10.0200 -1.5828 -1.5542 50 1 13.4175 -1.2297 -2.9937 51 1 12.2988 -0.8037 -1.5911 52 1 10.6336 1.5389 -3.1399 53 1 10.1973 0.2655 -1.9739 54 1 9.2433 -0.0407 -4.8002 55 1 8.4521 1.1920 -3.7977 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707228975.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:02 Heat of formation + Delta-G solvation = -58.845425 kcal Electronic energy + Delta-G solvation = -31131.727227 eV Core-core repulsion = 27169.357812 eV Total energy + Delta-G solvation = -3962.369415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57404 -39.81927 -38.93311 -37.23980 -36.37314 -35.47954 -33.44016 -32.91510 -31.43509 -29.63026 -28.28862 -27.83710 -27.17926 -25.14672 -24.87127 -24.20067 -22.46928 -22.07853 -21.81237 -19.99446 -19.78358 -18.65250 -18.30519 -17.64003 -17.23398 -17.15601 -16.88091 -16.44838 -16.13640 -15.78446 -15.45102 -15.31891 -15.00304 -14.73591 -14.55462 -14.20618 -13.95911 -13.89117 -13.74108 -13.67069 -13.35858 -13.26449 -13.00403 -12.91310 -12.84649 -12.78360 -12.69010 -12.65834 -12.46462 -12.14902 -12.12527 -11.95171 -11.82609 -11.70329 -11.63973 -11.59959 -11.44946 -10.89538 -10.69581 -10.52390 -10.40898 -10.27607 -9.66733 -8.66113 -7.74060 -5.19817 1.50157 1.51205 1.58657 1.61737 2.02468 2.58788 2.90544 2.91883 3.42995 3.45079 3.54490 3.76301 3.81891 3.98102 4.06608 4.07814 4.13469 4.17967 4.27997 4.34118 4.35917 4.37914 4.44106 4.50767 4.51471 4.54464 4.59552 4.63931 4.68701 4.75384 4.80532 4.82109 4.88249 4.89008 4.91159 4.92148 5.01668 5.07683 5.15418 5.16672 5.20333 5.21648 5.28956 5.34479 5.41486 5.47333 5.52087 5.55862 5.69722 5.82545 6.36327 6.44690 6.52559 7.14385 7.26076 7.96810 8.41818 9.32495 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.002769 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.987411 B =10109.471310 C =10983.872610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.615 5.615 3 C -0.224 4.224 4 H 0.076 0.924 5 C -0.067 4.067 6 N -0.951 5.951 7 Si 0.963 3.037 8 H -0.257 1.257 9 H -0.299 1.299 10 H -0.297 1.297 11 C 0.149 3.851 12 C 0.054 3.946 13 O -0.378 6.378 14 C 0.049 3.951 15 C 0.121 3.879 16 N -0.605 5.605 17 C 0.085 3.915 18 C 0.512 3.488 19 O -0.584 6.584 20 C -0.093 4.093 21 H 0.101 0.899 22 C -0.093 4.093 23 C -0.083 4.083 24 C -0.160 4.160 25 H 0.101 0.899 26 C -0.162 4.162 27 C -0.158 4.158 28 H 0.104 0.896 29 C -0.083 4.083 30 C -0.099 4.099 31 H -0.006 1.006 32 H 0.029 0.971 33 H 0.020 0.980 34 H 0.243 0.757 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.068 0.932 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.080 0.920 53 H 0.074 0.926 54 H 0.058 0.942 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.740 -6.676 -9.164 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.338 5.338 3 C -0.355 4.355 4 H 0.094 0.906 5 C -0.260 4.260 6 N -0.600 5.600 7 Si 0.792 3.208 8 H -0.180 1.180 9 H -0.227 1.227 10 H -0.224 1.224 11 C 0.022 3.978 12 C -0.025 4.025 13 O -0.297 6.297 14 C -0.029 4.029 15 C -0.002 4.002 16 N -0.336 5.336 17 C -0.058 4.058 18 C 0.302 3.698 19 O -0.464 6.464 20 C -0.114 4.114 21 H 0.119 0.881 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.178 4.178 25 H 0.119 0.881 26 C -0.199 4.199 27 C -0.176 4.176 28 H 0.122 0.878 29 C -0.120 4.120 30 C -0.137 4.137 31 H 0.013 0.987 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.118 0.882 51 H 0.117 0.883 52 H 0.099 0.901 53 H 0.093 0.907 54 H 0.077 0.923 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.598 -6.766 -9.480 24.538 hybrid contribution -0.641 0.592 -0.204 0.896 sum 20.957 -6.174 -9.684 23.898 Atomic orbital electron populations 1.20517 0.83211 0.96803 0.96309 1.44101 1.01812 1.01905 1.85948 1.19571 0.98736 0.86263 1.30900 0.90582 1.25810 0.98808 1.01923 0.99441 1.70241 1.20291 1.27274 1.42193 0.85236 0.78439 0.80280 0.76825 1.18042 1.22668 1.22417 1.20937 0.96067 0.87838 0.92933 1.23199 0.92146 0.91291 0.95867 1.88030 1.67268 1.50033 1.24382 1.22839 0.97873 0.97787 0.84393 1.21517 0.82583 0.99717 0.96425 1.47903 1.12848 1.43830 1.29020 1.21896 1.02964 0.94829 0.86093 1.21331 0.86972 0.78414 0.83081 1.90635 1.83972 1.40602 1.31217 1.20931 0.90569 0.98436 1.01500 0.88102 1.20646 0.96905 0.94186 1.01333 1.20908 0.91551 1.02294 0.97275 1.22703 0.98260 0.94195 1.02655 0.88060 1.23132 0.95116 1.02795 0.98867 1.22763 1.00470 0.94373 0.99979 0.87750 1.21244 0.91829 0.99495 0.99456 1.21060 0.96059 0.96806 0.99733 0.98730 0.95217 0.96174 0.94780 0.91353 0.93312 0.94821 0.92923 0.94497 0.92591 0.88739 0.89328 0.92767 0.88846 0.91272 0.93122 0.92399 0.90838 0.90835 0.88185 0.88269 0.90112 0.90705 0.92273 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.85 8.99 127.77 1.15 10.00 16 2 N -0.61 -30.71 2.90 -726.94 -2.11 -32.82 16 3 C -0.22 -12.08 9.22 84.03 0.77 -11.30 16 4 H 0.08 3.99 7.54 -2.91 -0.02 3.97 16 5 C -0.07 -3.74 5.10 84.86 0.43 -3.31 16 6 N -0.95 -56.89 10.68 21.65 0.23 -56.66 16 7 Si 0.96 44.63 29.57 68.60 2.03 46.66 16 8 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 9 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 10 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 11 C 0.15 5.94 6.11 86.38 0.53 6.46 16 12 C 0.05 1.88 6.28 71.98 0.45 2.33 16 13 O -0.38 -13.78 9.11 -148.98 -1.36 -15.14 16 14 C 0.05 1.50 6.28 71.98 0.45 1.96 16 15 C 0.12 3.36 5.82 86.38 0.50 3.86 16 16 N -0.60 -16.04 2.84 -846.75 -2.40 -18.45 16 17 C 0.08 2.02 9.43 127.77 1.20 3.22 16 18 C 0.51 13.80 6.55 87.66 0.57 14.37 16 19 O -0.58 -19.69 15.91 -3.04 -0.05 -19.74 16 20 C -0.09 -1.84 1.29 -12.47 -0.02 -1.85 16 21 H 0.10 1.75 6.18 -2.39 -0.01 1.74 16 22 C -0.09 -1.83 4.30 29.50 0.13 -1.71 16 23 C -0.08 -1.24 5.36 30.19 0.16 -1.07 16 24 C -0.16 -2.22 5.68 -10.32 -0.06 -2.27 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 26 C -0.16 -1.85 9.82 30.59 0.30 -1.55 16 27 C -0.16 -2.06 5.68 -10.32 -0.06 -2.11 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 C -0.08 -1.06 5.42 30.72 0.17 -0.89 16 30 C -0.10 -1.63 4.60 30.03 0.14 -1.49 16 31 H -0.01 -0.30 7.83 -2.39 -0.02 -0.32 16 32 H 0.03 1.63 6.71 -2.39 -0.02 1.61 16 33 H 0.02 0.86 8.10 -2.39 -0.02 0.84 16 34 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.07 2.46 8.07 -2.38 -0.02 2.44 16 36 H 0.05 1.98 8.04 -2.38 -0.02 1.96 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.09 2.53 7.49 -2.39 -0.02 2.51 16 42 H 0.09 2.45 7.86 -2.39 -0.02 2.43 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.62 5.84 -2.39 -0.01 1.61 16 45 H 0.07 1.82 7.84 -2.39 -0.02 1.80 16 46 H 0.05 1.13 8.09 -2.39 -0.02 1.11 16 47 H 0.06 1.31 7.68 -2.39 -0.02 1.30 16 48 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.07 1.00 6.13 -2.39 -0.01 0.98 16 50 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 52 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.07 0.89 6.20 -2.38 -0.01 0.88 16 54 H 0.06 1.13 7.79 -2.39 -0.02 1.11 16 55 H 0.07 1.12 7.49 -2.38 -0.02 1.10 16 Total: -1.00 -68.20 420.99 4.01 -64.20 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.83 Total: 17.30 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.83 Total: 14.65 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -4.28 Total: -107.93 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.41 Total: -34.88 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.20 4.01 -64.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707228975.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.352 kcal (2) G-P(sol) polarization free energy of solvation -68.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds