Wall clock time and date at job start Tue Mar 31 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 120.00141 * 2 1 4 4 H 1.07998 * 119.99482 * 325.10185 * 3 2 1 5 5 C 1.38813 * 120.00178 * 145.10327 * 3 2 1 6 6 N 1.31619 * 119.99841 * 160.44448 * 5 3 2 7 7 Si 1.86798 * 120.00155 * 340.44785 * 5 3 2 8 8 H 1.48506 * 109.46806 * 95.42495 * 7 5 3 9 9 H 1.48497 * 109.47009 * 215.42705 * 7 5 3 10 10 H 1.48500 * 109.47036 * 335.42820 * 7 5 3 11 11 C 1.46505 * 120.00078 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46978 * 90.00063 * 11 2 1 13 13 O 1.42898 * 109.46658 * 65.00156 * 12 11 2 14 14 C 1.42913 * 113.99649 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46869 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.47428 * 64.99788 * 15 14 13 17 17 C 1.46492 * 120.00260 * 270.00113 * 16 15 14 18 18 C 1.34782 * 119.99681 * 89.99693 * 16 15 14 19 19 O 1.21277 * 119.99966 * 4.05819 * 18 16 15 20 20 C 1.50703 * 119.99617 * 184.05761 * 18 16 15 21 21 H 1.08999 * 109.47024 * 307.05566 * 20 18 16 22 22 C 1.53001 * 109.46923 * 67.05496 * 20 18 16 23 23 C 1.53002 * 109.46794 * 119.99935 * 22 20 18 24 24 C 1.52997 * 109.47256 * 299.99585 * 23 22 20 25 25 C 1.52995 * 109.47020 * 59.99967 * 24 23 22 26 26 C 1.52995 * 109.46805 * 187.05237 * 20 18 16 27 27 C 1.53000 * 109.47165 * 180.02562 * 26 20 18 28 28 C 1.52997 * 109.47518 * 60.00065 * 23 22 20 29 29 H 1.09002 * 109.47494 * 265.12511 * 1 2 3 30 30 H 1.08996 * 109.46974 * 25.13375 * 1 2 3 31 31 H 1.09006 * 109.47061 * 145.13253 * 1 2 3 32 32 H 0.96997 * 119.99911 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.46886 * 330.00574 * 11 2 1 34 34 H 1.09002 * 109.47141 * 210.00392 * 11 2 1 35 35 H 1.09000 * 109.47230 * 305.00087 * 12 11 2 36 36 H 1.08995 * 109.46831 * 185.00205 * 12 11 2 37 37 H 1.09000 * 109.46835 * 59.99754 * 14 13 12 38 38 H 1.09001 * 109.46744 * 299.99565 * 14 13 12 39 39 H 1.08997 * 109.47002 * 304.99713 * 15 14 13 40 40 H 1.08994 * 109.46835 * 185.00165 * 15 14 13 41 41 H 1.09005 * 109.47244 * 265.18184 * 17 16 15 42 42 H 1.09009 * 109.47320 * 25.17809 * 17 16 15 43 43 H 1.09003 * 109.47540 * 145.17675 * 17 16 15 44 44 H 1.09001 * 109.46746 * 239.99664 * 22 20 18 45 45 H 1.09002 * 109.47443 * 359.97438 * 22 20 18 46 46 H 1.09007 * 109.46622 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.46897 * 300.00361 * 24 23 22 48 48 H 1.09002 * 109.47424 * 180.02562 * 24 23 22 49 49 H 1.08998 * 109.47282 * 239.99669 * 25 24 23 50 50 H 1.09007 * 109.46794 * 120.00111 * 25 24 23 51 51 H 1.09007 * 109.47341 * 60.00362 * 26 20 18 52 52 H 1.08996 * 109.47105 * 180.02562 * 27 26 20 53 53 H 1.09003 * 109.46775 * 299.99917 * 27 26 20 54 54 H 1.09001 * 109.47387 * 59.99435 * 28 23 22 55 55 H 1.08995 * 109.47837 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7553 2.0370 -0.5351 5 6 3.3506 1.2940 0.6877 6 7 4.1926 2.2619 0.3936 7 14 3.7718 0.0657 2.0306 8 1 4.6128 -1.0189 1.4633 9 1 4.5168 0.7541 3.1151 10 1 2.5205 -0.5147 2.5808 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 8 3.3210 -0.7734 -2.0809 14 6 3.6250 -1.0954 -3.4397 15 6 4.5570 -0.0298 -4.0201 16 7 5.8411 -0.0682 -3.3160 17 6 6.0462 0.7539 -2.1210 18 6 6.8339 -0.8601 -3.7677 19 8 6.6906 -1.4843 -4.7975 20 6 8.1219 -0.9696 -2.9930 21 1 8.5203 0.0278 -2.8076 22 6 7.8563 -1.6689 -1.6583 23 6 8.6931 -2.9472 -1.5770 24 6 8.3108 -3.8812 -2.7270 25 6 8.5763 -3.1818 -4.0616 26 6 9.1356 -1.7817 -3.8014 27 6 10.4431 -1.8936 -3.0147 28 6 10.1778 -2.5924 -1.6802 29 1 -0.3634 -0.0873 1.0239 30 1 -0.3633 0.9303 -0.4365 31 1 -0.3633 -0.8432 -0.5875 32 1 5.0316 2.3377 0.8744 33 1 1.6084 -2.0282 0.5147 34 1 3.1499 -1.1382 0.5144 35 1 1.5062 -1.7558 -1.9808 36 1 2.9181 -2.6966 -1.4426 37 1 2.7031 -1.1277 -4.0204 38 1 4.1152 -2.0681 -3.4816 39 1 4.1047 0.9543 -3.8974 40 1 4.7178 -0.2262 -5.0801 41 1 6.5217 1.6933 -2.4034 42 1 5.0838 0.9604 -1.6524 43 1 6.6855 0.2200 -1.4179 44 1 8.1287 -1.0036 -0.8391 45 1 6.7985 -1.9214 -1.5845 46 1 8.5042 -3.4452 -0.6259 47 1 7.2531 -4.1340 -2.6533 48 1 8.9067 -4.7920 -2.6688 49 1 7.6447 -3.1026 -4.6219 50 1 9.2986 -3.7605 -4.6376 51 1 9.3249 -1.2835 -4.7523 52 1 11.1655 -2.4718 -3.5908 53 1 10.8418 -0.8962 -2.8290 54 1 10.4502 -1.9270 -0.8610 55 1 10.7740 -3.5030 -1.6228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707234719.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:36 Heat of formation + Delta-G solvation = -73.773790 kcal Electronic energy + Delta-G solvation = -32887.817269 eV Core-core repulsion = 28924.800512 eV Total energy + Delta-G solvation = -3963.016757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21320 -39.91911 -38.94682 -37.32629 -36.38093 -33.58829 -32.93476 -32.29126 -31.64486 -31.16756 -29.71835 -27.91626 -27.41247 -25.03913 -24.52635 -23.54601 -23.40317 -22.71543 -22.50485 -20.17315 -18.68577 -18.36389 -17.90791 -17.70087 -17.47057 -17.21153 -16.87326 -16.75859 -16.27799 -16.08968 -15.63121 -15.34488 -15.18219 -14.64966 -14.52353 -14.07849 -13.95626 -13.83008 -13.69086 -13.45379 -13.21946 -13.20884 -13.10729 -13.01376 -12.95547 -12.90362 -12.83711 -12.72318 -12.65890 -12.59919 -12.42109 -12.21007 -12.06136 -11.68479 -11.62517 -11.34022 -11.24180 -10.80939 -10.72489 -10.51356 -10.36167 -10.19282 -9.57999 -8.68725 -7.97449 -5.33711 1.34851 1.46156 1.52767 1.60634 2.08055 2.53847 2.90908 3.21052 3.42371 3.55348 3.56168 3.67158 3.90544 4.10979 4.15309 4.22364 4.27995 4.28884 4.31756 4.35840 4.37333 4.39789 4.44906 4.47265 4.51438 4.52809 4.54881 4.57248 4.61665 4.69040 4.70161 4.75029 4.75906 4.85049 4.86714 4.91628 5.06366 5.10836 5.11099 5.14109 5.16757 5.25597 5.32103 5.36243 5.42993 5.47725 5.53578 5.56804 5.66755 6.07914 6.30439 6.43682 6.56382 7.11152 7.19231 7.79005 8.18703 9.20817 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.004028 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.209425 B = 6949.300378 C = 7544.274562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.623 5.623 3 C -0.239 4.239 4 H 0.039 0.961 5 C 0.004 3.996 6 N -0.930 5.930 7 Si 0.929 3.071 8 H -0.280 1.280 9 H -0.316 1.316 10 H -0.273 1.273 11 C 0.130 3.870 12 C 0.051 3.949 13 O -0.371 6.371 14 C 0.050 3.950 15 C 0.122 3.878 16 N -0.602 5.602 17 C 0.081 3.919 18 C 0.514 3.486 19 O -0.570 6.570 20 C -0.096 4.096 21 H 0.101 0.899 22 C -0.102 4.102 23 C -0.086 4.086 24 C -0.110 4.110 25 C -0.126 4.126 26 C -0.061 4.061 27 C -0.109 4.109 28 C -0.109 4.109 29 H 0.014 0.986 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.258 0.742 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.077 0.923 53 H 0.070 0.930 54 H 0.069 0.931 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.734 -11.160 -6.223 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.348 5.348 3 C -0.369 4.369 4 H 0.056 0.944 5 C -0.192 4.192 6 N -0.574 5.574 7 Si 0.761 3.239 8 H -0.209 1.209 9 H -0.245 1.245 10 H -0.198 1.198 11 C 0.005 3.995 12 C -0.028 4.028 13 O -0.290 6.290 14 C -0.028 4.028 15 C -0.001 4.001 16 N -0.333 5.333 17 C -0.062 4.062 18 C 0.304 3.696 19 O -0.450 6.450 20 C -0.117 4.117 21 H 0.120 0.880 22 C -0.140 4.140 23 C -0.104 4.104 24 C -0.147 4.147 25 C -0.164 4.164 26 C -0.080 4.080 27 C -0.146 4.146 28 C -0.146 4.146 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.095 0.905 53 H 0.088 0.912 54 H 0.087 0.913 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.802 -11.213 -6.609 16.294 hybrid contribution -0.249 -0.271 0.635 0.734 sum 9.553 -11.483 -5.975 16.088 Atomic orbital electron populations 1.21145 0.82393 1.00127 0.98264 1.44134 1.02129 1.01558 1.86965 1.18479 1.03835 0.89835 1.24770 0.94351 1.25568 0.96968 0.97595 0.99106 1.69924 1.09458 1.35657 1.42398 0.86120 0.77497 0.79421 0.80840 1.20856 1.24529 1.19808 1.21385 0.95858 0.88363 0.93918 1.23154 0.92931 0.91110 0.95622 1.88223 1.67224 1.49337 1.24198 1.22856 0.97974 0.97323 0.84686 1.21465 0.82572 0.99567 0.96500 1.47868 1.13147 1.43361 1.28890 1.21963 1.04541 0.93613 0.86095 1.21157 0.85788 0.77734 0.84932 1.90516 1.82551 1.46153 1.25821 1.21334 0.92503 1.01864 0.96006 0.88045 1.21536 0.99377 0.97725 0.95382 1.21062 0.95993 0.94687 0.98650 1.21509 1.00037 0.98457 0.94709 1.21787 1.02156 0.95097 0.97316 1.20784 0.94093 0.95584 0.97573 1.21541 0.95583 1.01426 0.96058 1.21529 0.94331 1.01121 0.97638 0.96733 0.94171 0.92683 0.93277 0.89992 0.94734 0.93179 0.93606 0.91841 0.94715 0.90298 0.88257 0.92655 0.89867 0.91139 0.90476 0.94028 0.90720 0.94369 0.90640 0.91302 0.91546 0.91661 0.90477 0.91162 0.91261 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 4.70 10.70 127.77 1.37 6.06 16 2 N -0.62 -28.60 2.53 -726.91 -1.84 -30.44 16 3 C -0.24 -13.08 9.46 84.03 0.79 -12.29 16 4 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 5 C 0.00 0.24 5.36 84.86 0.46 0.70 16 6 N -0.93 -53.14 13.27 21.65 0.29 -52.86 16 7 Si 0.93 45.15 24.74 68.60 1.70 46.84 16 8 H -0.28 -13.16 6.73 99.48 0.67 -12.49 16 9 H -0.32 -15.68 7.11 99.48 0.71 -14.97 16 10 H -0.27 -12.94 7.07 99.48 0.70 -12.24 16 11 C 0.13 5.33 4.91 86.38 0.42 5.75 16 12 C 0.05 1.86 6.28 71.98 0.45 2.31 16 13 O -0.37 -15.33 8.73 -148.98 -1.30 -16.64 16 14 C 0.05 1.70 6.28 71.98 0.45 2.15 16 15 C 0.12 4.10 5.82 86.38 0.50 4.61 16 16 N -0.60 -20.69 2.84 -846.76 -2.40 -23.10 16 17 C 0.08 2.94 9.69 127.77 1.24 4.18 16 18 C 0.51 16.80 6.45 87.66 0.57 17.37 16 19 O -0.57 -20.64 12.98 -3.02 -0.04 -20.68 16 20 C -0.10 -2.55 1.77 -11.54 -0.02 -2.57 16 21 H 0.10 2.48 7.81 -2.39 -0.02 2.46 16 22 C -0.10 -2.71 3.65 30.60 0.11 -2.60 16 23 C -0.09 -1.87 3.19 -10.79 -0.03 -1.90 16 24 C -0.11 -2.51 5.71 30.59 0.17 -2.34 16 25 C -0.13 -3.11 5.39 30.59 0.16 -2.94 16 26 C -0.06 -1.43 2.41 -10.80 -0.03 -1.46 16 27 C -0.11 -1.90 5.70 30.58 0.17 -1.73 16 28 C -0.11 -1.87 5.71 30.58 0.17 -1.70 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.04 1.52 8.00 -2.39 -0.02 1.50 16 31 H 0.05 1.71 8.11 -2.38 -0.02 1.69 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.08 2.84 8.07 -2.38 -0.02 2.82 16 34 H 0.03 1.59 2.68 -2.39 -0.01 1.59 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 40 H 0.10 3.10 7.37 -2.39 -0.02 3.08 16 41 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.08 3.81 6.50 -2.38 -0.02 3.79 16 43 H 0.07 2.41 4.82 -2.39 -0.01 2.40 16 44 H 0.08 1.95 7.56 -2.39 -0.02 1.93 16 45 H 0.04 1.34 7.40 -2.39 -0.02 1.32 16 46 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.07 2.14 5.26 -2.39 -0.01 2.12 16 50 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 51 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 52 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 54 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 55 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -64.00 404.64 4.17 -59.83 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.80 Total: 23.42 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 6.97 Total: 13.61 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -3.95 Total: -106.39 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.34 Total: -37.32 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.70 Total: 46.84 kcal Total: -64.00 4.17 -59.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707234719.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.945 kcal (2) G-P(sol) polarization free energy of solvation -64.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds