Wall clock time and date at job start Tue Mar 31 2020 22:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 119.99739 * 2 1 4 4 H 1.08002 * 119.99968 * 154.14491 * 3 2 1 5 5 C 1.38809 * 120.00060 * 333.85715 * 3 2 1 6 6 N 1.31613 * 119.99918 * 352.57042 * 5 3 2 7 7 Si 1.86802 * 119.99845 * 172.56948 * 5 3 2 8 8 H 1.48500 * 109.47002 * 90.00492 * 7 5 3 9 9 H 1.48503 * 109.46806 * 210.00374 * 7 5 3 10 10 H 1.48497 * 109.46983 * 329.99897 * 7 5 3 11 11 C 1.46499 * 119.99936 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47135 * 270.00201 * 11 2 1 13 13 O 1.42900 * 109.47228 * 65.00208 * 12 11 2 14 14 C 1.42902 * 114.00168 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46839 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.47224 * 65.00431 * 15 14 13 17 17 C 1.46501 * 119.99916 * 269.99652 * 16 15 14 18 18 C 1.34778 * 119.99890 * 89.99722 * 16 15 14 19 19 O 1.21277 * 120.00190 * 355.67149 * 18 16 15 20 20 C 1.50694 * 119.99636 * 175.67803 * 18 16 15 21 21 H 1.08997 * 109.47562 * 54.71932 * 20 18 16 22 22 C 1.53002 * 109.47120 * 294.72153 * 20 18 16 23 23 C 1.52992 * 109.47493 * 240.00309 * 22 20 18 24 24 C 1.53003 * 109.47107 * 59.99869 * 23 22 20 25 25 C 1.53003 * 109.46933 * 300.00025 * 24 23 22 26 26 C 1.52996 * 109.47025 * 359.97438 * 25 24 23 27 27 C 1.52995 * 109.47308 * 299.99866 * 26 25 24 28 28 C 1.52993 * 109.47327 * 60.00060 * 27 26 25 29 29 H 1.09008 * 109.47284 * 93.60610 * 1 2 3 30 30 H 1.08997 * 109.47626 * 213.60267 * 1 2 3 31 31 H 1.08998 * 109.47553 * 333.60524 * 1 2 3 32 32 H 0.97007 * 120.00113 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47211 * 30.00414 * 11 2 1 34 34 H 1.08996 * 109.46875 * 150.00261 * 11 2 1 35 35 H 1.09003 * 109.46873 * 184.99563 * 12 11 2 36 36 H 1.08998 * 109.47398 * 304.99796 * 12 11 2 37 37 H 1.08996 * 109.47313 * 300.00050 * 14 13 12 38 38 H 1.08996 * 109.47107 * 60.00212 * 14 13 12 39 39 H 1.09007 * 109.46790 * 185.00115 * 15 14 13 40 40 H 1.08996 * 109.47313 * 304.99801 * 15 14 13 41 41 H 1.08999 * 109.46789 * 93.66726 * 17 16 15 42 42 H 1.08994 * 109.46741 * 213.66756 * 17 16 15 43 43 H 1.09000 * 109.46933 * 333.67023 * 17 16 15 44 44 H 1.09000 * 109.46913 * 0.02562 * 22 20 18 45 45 H 1.09005 * 109.47059 * 120.00108 * 22 20 18 46 46 H 1.09002 * 109.47714 * 179.97438 * 23 22 20 47 47 H 1.09005 * 109.47065 * 180.02562 * 24 23 22 48 48 H 1.08992 * 109.47253 * 60.00261 * 24 23 22 49 49 H 1.08999 * 109.47093 * 239.99385 * 25 24 23 50 50 H 1.09002 * 109.46562 * 120.00370 * 25 24 23 51 51 H 1.09003 * 109.46791 * 179.97438 * 26 25 24 52 52 H 1.09001 * 109.46958 * 180.02562 * 27 26 25 53 53 H 1.09008 * 109.46889 * 299.99864 * 27 26 25 54 54 H 1.08999 * 109.47529 * 240.00348 * 28 27 26 55 55 H 1.09005 * 109.47090 * 119.99826 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1485 1.2328 0.4079 5 6 1.5620 2.3265 -0.5297 6 7 0.4110 2.2407 -1.1621 7 14 2.4050 3.9833 -0.3448 8 1 3.3068 4.2116 -1.5023 9 1 1.3805 5.0572 -0.2960 10 1 3.1976 3.9979 0.9109 11 6 2.1974 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4432 13 8 1.2059 -1.9927 2.0822 14 6 1.3323 -2.4161 3.4412 15 6 -0.0569 -2.6888 4.0216 16 7 -0.6665 -3.8203 3.3183 17 6 -1.4807 -3.5870 2.1229 18 6 -0.4782 -5.0757 3.7710 19 8 0.2589 -5.2765 4.7129 20 6 -1.1834 -6.2299 3.1066 21 1 -0.9625 -6.2248 2.0392 22 6 -2.6929 -6.0937 3.3156 23 6 -3.2159 -7.3179 4.0696 24 6 -2.5196 -7.4158 5.4285 25 6 -1.0101 -7.5520 5.2195 26 6 -0.7001 -7.5456 3.7212 27 6 -1.4161 -8.7177 3.0473 28 6 -2.9256 -8.5816 3.2563 29 1 -0.3634 -0.0646 -1.0257 30 1 -0.3634 -0.8559 0.5687 31 1 -0.3634 0.9205 0.4568 32 1 0.0001 3.0379 -1.5319 33 1 1.6084 -2.0286 -0.5130 34 1 3.1498 -1.1386 -0.5133 35 1 3.0731 -2.6058 1.4449 36 1 2.9641 -0.9123 1.9819 37 1 1.9296 -3.3268 3.4840 38 1 1.8209 -1.6335 4.0216 39 1 0.0325 -2.9256 5.0819 40 1 -0.6822 -1.8047 3.8982 41 1 -0.8564 -3.6799 1.2343 42 1 -2.2839 -4.3226 2.0813 43 1 -1.9075 -2.5849 2.1640 44 1 -2.8998 -5.1940 3.8951 45 1 -3.1890 -6.0240 2.3475 46 1 -4.2913 -7.2208 4.2189 47 1 -2.8919 -8.2883 5.9655 48 1 -2.7265 -6.5163 6.0083 49 1 -0.6657 -8.4888 5.6575 50 1 -0.5000 -6.7171 5.7001 51 1 0.3754 -7.6422 3.5724 52 1 -1.1949 -8.7134 1.9800 53 1 -1.0716 -9.6544 3.4856 54 1 -3.2981 -9.4535 3.7939 55 1 -3.4216 -8.5123 2.2881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707234720.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:41 Heat of formation + Delta-G solvation = -85.681563 kcal Electronic energy + Delta-G solvation = -31407.932084 eV Core-core repulsion = 27444.398967 eV Total energy + Delta-G solvation = -3963.533117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.18162 -39.90936 -38.88406 -37.21572 -36.42370 -33.58166 -32.78687 -32.23833 -31.61332 -30.82638 -29.52223 -27.79122 -27.45591 -25.09761 -24.71892 -23.45605 -23.36417 -22.74376 -22.15187 -20.20479 -18.76020 -18.28178 -17.79896 -17.47142 -17.42317 -17.18649 -17.01100 -16.44028 -16.31076 -16.13145 -15.58902 -15.28519 -15.14723 -14.80501 -14.15702 -13.96090 -13.83956 -13.75449 -13.53880 -13.36370 -13.18584 -13.04495 -12.95528 -12.91158 -12.88000 -12.82093 -12.70668 -12.68648 -12.53506 -12.53006 -12.40521 -12.23044 -11.96251 -11.82475 -11.74690 -11.59670 -11.20058 -10.76256 -10.68182 -10.60477 -10.46254 -10.19640 -9.59342 -8.66553 -7.80971 -5.30301 1.46759 1.47385 1.56599 1.64757 2.05586 2.51914 2.86772 3.34384 3.46082 3.60070 3.72103 3.76473 3.93368 4.11893 4.15421 4.24983 4.32662 4.36074 4.38875 4.41493 4.42789 4.45175 4.51620 4.52608 4.54018 4.59300 4.59924 4.61412 4.66723 4.72664 4.74711 4.82441 4.90758 4.93885 5.05735 5.12159 5.13774 5.15989 5.17227 5.21885 5.33964 5.39509 5.46338 5.48051 5.51705 5.53255 5.58562 5.63735 5.66472 5.76595 6.36502 6.38848 6.49348 7.20252 7.21947 7.91924 8.38426 9.23330 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.002292 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.057397 B =12216.027136 C =12493.502909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.613 5.613 3 C -0.261 4.261 4 H 0.066 0.934 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.969 3.031 8 H -0.284 1.284 9 H -0.293 1.293 10 H -0.272 1.272 11 C 0.151 3.849 12 C 0.056 3.944 13 O -0.381 6.381 14 C 0.049 3.951 15 C 0.124 3.876 16 N -0.606 5.606 17 C 0.079 3.921 18 C 0.513 3.487 19 O -0.573 6.573 20 C -0.096 4.096 21 H 0.104 0.896 22 C -0.102 4.102 23 C -0.084 4.084 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.064 4.064 27 C -0.111 4.111 28 C -0.110 4.110 29 H -0.013 1.013 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.248 0.752 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.046 0.954 49 H 0.056 0.944 50 H 0.067 0.933 51 H 0.053 0.947 52 H 0.069 0.931 53 H 0.066 0.934 54 H 0.068 0.932 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 -22.725 10.385 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.336 5.336 3 C -0.392 4.392 4 H 0.084 0.916 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.797 3.203 8 H -0.211 1.211 9 H -0.220 1.220 10 H -0.197 1.197 11 C 0.024 3.976 12 C -0.023 4.023 13 O -0.301 6.301 14 C -0.029 4.029 15 C 0.001 3.999 16 N -0.337 5.337 17 C -0.063 4.063 18 C 0.304 3.696 19 O -0.454 6.454 20 C -0.117 4.117 21 H 0.122 0.878 22 C -0.140 4.140 23 C -0.103 4.103 24 C -0.149 4.149 25 C -0.165 4.165 26 C -0.083 4.083 27 C -0.149 4.149 28 C -0.147 4.147 29 H 0.005 0.995 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.088 0.912 53 H 0.085 0.915 54 H 0.087 0.913 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.382 -22.668 10.693 26.428 hybrid contribution 1.035 1.417 0.115 1.759 sum -7.347 -21.251 10.808 24.947 Atomic orbital electron populations 1.20390 0.82594 0.96757 0.95627 1.43996 1.02296 1.01201 1.86128 1.19486 0.99865 0.87734 1.32071 0.91627 1.25849 0.98496 1.02068 0.98399 1.70223 1.19397 1.28174 1.40784 0.85257 0.77430 0.79679 0.77957 1.21054 1.21975 1.19728 1.20912 0.96478 0.87424 0.92746 1.23182 0.85769 0.97479 0.95897 1.87918 1.30078 1.87402 1.24658 1.22856 0.98209 0.97731 0.84088 1.21477 0.92730 0.89311 0.96410 1.47856 1.50930 1.05794 1.29156 1.22028 0.94920 1.03424 0.85947 1.21233 0.80899 0.84320 0.83187 1.90566 1.39610 1.84565 1.30614 1.21358 0.97085 0.92232 1.01071 0.87839 1.21624 0.91777 0.98518 1.02079 1.21072 0.99921 0.94766 0.94499 1.21536 0.94985 1.01253 0.97146 1.21775 0.96736 1.02097 0.95923 1.20767 0.98799 0.93204 0.95503 1.21549 0.95779 0.96980 1.00552 1.21555 0.95458 0.97218 1.00503 0.99498 0.95138 0.96039 0.94310 0.93094 0.91811 0.92947 0.95232 0.94477 0.92904 0.88859 0.89138 0.93019 0.88546 0.90888 0.92156 0.88724 0.89636 0.91313 0.93492 0.92552 0.91490 0.92874 0.91240 0.91484 0.91279 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.67 8.83 127.77 1.13 10.80 16 2 N -0.61 -31.23 2.88 -726.96 -2.10 -33.33 16 3 C -0.26 -14.48 9.64 84.03 0.81 -13.67 16 4 H 0.07 3.53 7.84 -2.91 -0.02 3.51 16 5 C -0.05 -3.02 5.15 84.86 0.44 -2.58 16 6 N -0.94 -56.09 10.66 21.65 0.23 -55.86 16 7 Si 0.97 45.39 29.56 68.60 2.03 47.42 16 8 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 C 0.15 6.18 6.09 86.38 0.53 6.70 16 12 C 0.06 1.99 6.28 71.98 0.45 2.45 16 13 O -0.38 -13.33 8.67 -148.98 -1.29 -14.63 16 14 C 0.05 1.46 6.28 71.98 0.45 1.91 16 15 C 0.12 3.19 5.82 86.38 0.50 3.70 16 16 N -0.61 -14.57 2.81 -846.76 -2.38 -16.95 16 17 C 0.08 1.61 9.55 127.77 1.22 2.83 16 18 C 0.51 12.80 6.46 87.65 0.57 13.37 16 19 O -0.57 -17.89 13.11 -3.02 -0.04 -17.93 16 20 C -0.10 -1.76 1.77 -11.52 -0.02 -1.78 16 21 H 0.10 1.70 7.88 -2.39 -0.02 1.68 16 22 C -0.10 -1.42 3.61 30.59 0.11 -1.31 16 23 C -0.08 -1.07 3.20 -10.78 -0.03 -1.10 16 24 C -0.11 -1.80 5.71 30.60 0.17 -1.62 16 25 C -0.13 -2.57 5.39 30.59 0.16 -2.41 16 26 C -0.06 -1.18 2.40 -10.78 -0.03 -1.21 16 27 C -0.11 -1.47 5.71 30.59 0.17 -1.30 16 28 C -0.11 -1.19 5.71 30.61 0.17 -1.01 16 29 H -0.01 -0.73 7.78 -2.38 -0.02 -0.75 16 30 H 0.03 1.35 7.06 -2.39 -0.02 1.33 16 31 H 0.02 1.17 6.81 -2.39 -0.02 1.16 16 32 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 33 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 34 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 2.36 7.49 -2.38 -0.02 2.34 16 40 H 0.09 2.25 7.87 -2.39 -0.02 2.23 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.40 4.64 -2.39 -0.01 1.39 16 43 H 0.07 1.55 7.85 -2.39 -0.02 1.53 16 44 H 0.06 0.96 7.27 -2.39 -0.02 0.94 16 45 H 0.09 0.94 7.52 -2.38 -0.02 0.92 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.07 1.77 5.32 -2.39 -0.01 1.76 16 51 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 54 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 55 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -68.18 410.33 4.10 -64.08 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.83 Total: 13.43 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.81 Total: 13.77 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -4.24 Total: -106.14 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.33 Total: -32.56 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -68.18 4.10 -64.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707234720.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.605 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds