Wall clock time and date at job start Tue Mar 31 2020 23:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53117 * 109.52536 * 2 1 4 4 C 1.53036 * 109.27746 * 182.37777 * 3 2 1 5 5 N 1.46850 * 109.52309 * 59.18490 * 4 3 2 6 6 C 1.46896 * 110.99961 * 174.15669 * 5 4 3 7 7 C 1.50690 * 109.47512 * 293.59179 * 6 5 4 8 8 O 1.21286 * 119.99934 * 353.51943 * 7 6 5 9 9 N 1.34779 * 120.00401 * 173.24712 * 7 6 5 10 10 C 1.46500 * 120.00305 * 180.27574 * 9 7 6 11 11 C 1.52995 * 109.47129 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46952 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99852 * 294.29900 * 12 11 10 14 14 C 1.53245 * 109.33741 * 172.74749 * 13 12 11 15 15 N 1.47075 * 108.51907 * 53.83236 * 14 13 12 16 16 C 1.36942 * 120.88161 * 128.83850 * 15 14 13 17 17 H 1.08004 * 119.99489 * 330.20144 * 16 15 14 18 18 C 1.38809 * 120.00185 * 150.20287 * 16 15 14 19 19 N 1.31620 * 119.99831 * 160.81484 * 18 16 15 20 20 Si 1.86801 * 119.99896 * 340.81028 * 18 16 15 21 21 H 1.48496 * 109.47007 * 89.46549 * 20 18 16 22 22 H 1.48508 * 109.46832 * 209.46060 * 20 18 16 23 23 H 1.48490 * 109.47320 * 329.46076 * 20 18 16 24 24 C 1.47074 * 118.23876 * 308.81215 * 15 14 13 25 25 C 1.46904 * 110.99920 * 170.00073 * 12 11 10 26 26 C 1.46847 * 111.19354 * 298.25683 * 5 4 3 27 27 C 1.53033 * 109.52797 * 61.74371 * 26 5 4 28 28 H 1.08994 * 109.47137 * 59.99642 * 1 2 3 29 29 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46509 * 299.99613 * 1 2 3 31 31 H 1.08999 * 109.52386 * 120.13184 * 2 1 3 32 32 H 1.09004 * 109.49986 * 62.44098 * 3 2 1 33 33 H 1.08997 * 109.53460 * 302.33910 * 3 2 1 34 34 H 1.09000 * 109.46753 * 299.16537 * 4 3 2 35 35 H 1.09007 * 109.45089 * 179.19073 * 4 3 2 36 36 H 1.08999 * 109.46931 * 173.59088 * 6 5 4 37 37 H 1.09005 * 109.47264 * 53.59798 * 6 5 4 38 38 H 0.96995 * 119.99606 * 0.27088 * 9 7 6 39 39 H 1.08996 * 109.46946 * 300.00288 * 10 9 7 40 40 H 1.09005 * 109.47001 * 60.00133 * 10 9 7 41 41 H 1.09002 * 109.47342 * 299.99626 * 11 10 9 42 42 H 1.08996 * 109.47106 * 60.00099 * 11 10 9 43 43 H 1.08999 * 109.49295 * 292.70474 * 13 12 11 44 44 H 1.09000 * 109.49052 * 52.78715 * 13 12 11 45 45 H 1.08997 * 109.62667 * 294.11992 * 14 13 12 46 46 H 1.08998 * 109.62440 * 173.53956 * 14 13 12 47 47 H 0.97006 * 119.99621 * 180.02562 * 19 18 16 48 48 H 1.09006 * 109.62900 * 291.47575 * 24 15 14 49 49 H 1.09005 * 109.79255 * 170.99393 * 24 15 14 50 50 H 1.09000 * 109.49259 * 307.20721 * 25 12 11 51 51 H 1.09000 * 109.49364 * 67.29168 * 25 12 11 52 52 H 1.09004 * 109.46234 * 181.76277 * 26 5 4 53 53 H 1.09002 * 109.45985 * 301.72279 * 26 5 4 54 54 H 1.08997 * 109.50258 * 180.87855 * 27 26 5 55 55 H 1.08995 * 109.50197 * 60.76084 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4431 0.0000 4 6 3.5710 1.4369 -0.0599 5 7 4.0116 0.7425 -1.2765 6 6 5.4685 0.8373 -1.4384 7 6 5.8533 2.2716 -1.6943 8 8 4.9926 3.1110 -1.8547 9 7 7.1537 2.6228 -1.7396 10 6 7.5277 4.0183 -1.9825 11 6 9.0524 4.1448 -1.9843 12 7 9.4273 5.5442 -2.2272 13 6 9.0326 5.9682 -3.5772 14 6 9.2745 7.4740 -3.7271 15 7 10.6719 7.7606 -3.3689 16 6 11.4773 8.4864 -4.2055 17 1 11.3162 8.4536 -5.2729 18 6 12.5007 9.2642 -3.6816 19 7 13.4933 9.6527 -4.4537 20 14 12.4690 9.7597 -1.8808 21 1 13.1608 8.7253 -1.0706 22 1 13.1605 11.0634 -1.7139 23 1 11.0609 9.8846 -1.4264 24 6 11.1811 7.2476 -2.0880 25 6 10.8643 5.7508 -2.0025 26 6 3.5720 -0.6587 -1.2767 27 6 2.0429 -0.7151 -1.2531 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8943 -0.5157 0.8885 32 1 1.7153 1.9449 0.9109 33 1 1.6457 1.9703 -0.8679 34 1 3.9667 0.9222 0.8156 35 1 3.9378 2.4633 -0.0746 36 1 5.7812 0.2212 -2.2814 37 1 5.9586 0.4861 -0.5303 38 1 7.8420 1.9515 -1.6114 39 1 7.1351 4.3368 -2.9481 40 1 7.1121 4.6479 -1.1957 41 1 9.4446 3.8264 -1.0184 42 1 9.4682 3.5151 -2.7708 43 1 9.6260 5.4292 -4.3157 44 1 7.9754 5.7524 -3.7317 45 1 8.6063 8.0202 -3.0614 46 1 9.0924 7.7730 -4.7594 47 1 14.2087 10.1959 -4.0875 48 1 10.6962 7.7722 -1.2647 49 1 12.2594 7.3973 -2.0330 50 1 11.1354 5.3775 -1.0150 51 1 11.4321 5.2148 -2.7630 52 1 3.9400 -1.1546 -2.1750 53 1 3.9678 -1.1635 -0.3955 54 1 1.7174 -1.7552 -1.2375 55 1 1.6469 -0.2225 -2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713077689.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:08 Heat of formation + Delta-G solvation = -28.166496 kcal Electronic energy + Delta-G solvation = -29666.027792 eV Core-core repulsion = 25737.281466 eV Total energy + Delta-G solvation = -3928.746325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.07378 -40.02592 -39.43780 -36.95656 -35.50583 -35.33872 -33.63230 -32.06567 -31.75174 -31.07233 -29.77498 -27.84209 -26.35467 -25.19512 -24.18596 -24.10634 -22.99157 -22.58544 -21.45528 -20.99652 -20.56840 -18.83989 -18.05268 -17.45506 -17.28196 -16.87894 -16.51373 -16.19873 -15.90881 -15.75615 -15.64915 -15.55362 -15.37797 -15.14746 -15.06867 -14.80436 -14.48959 -14.38186 -14.10854 -13.86401 -13.75275 -13.42318 -13.28023 -13.00594 -12.99778 -12.72461 -12.57127 -12.51390 -12.39704 -12.22895 -12.12122 -12.10292 -11.79110 -11.64484 -11.60063 -11.48821 -11.27566 -11.15646 -10.76075 -10.70489 -10.05222 -9.40671 -9.23984 -8.87410 -8.18641 -5.53392 1.29065 1.41739 1.51915 1.68934 1.99148 2.40658 2.88093 3.05384 3.11678 3.34580 3.78187 3.84928 3.87173 3.90161 3.95130 4.07513 4.15272 4.21604 4.27595 4.32311 4.36440 4.42740 4.44979 4.50286 4.51273 4.54084 4.59158 4.62008 4.70165 4.74645 4.79531 4.82159 4.85606 4.90130 4.94726 4.96492 5.00775 5.03255 5.04298 5.15369 5.24541 5.26913 5.28468 5.34704 5.44102 5.55398 5.83496 6.00467 6.04653 6.07268 6.16569 6.17503 6.63104 6.89269 7.33639 7.58885 8.02895 9.01362 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.033494 B = 0.001675 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.777318 B =16714.103255 C =16849.646706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.108 4.108 4 C 0.057 3.943 5 N -0.543 5.543 6 C 0.042 3.958 7 C 0.507 3.493 8 O -0.568 6.568 9 N -0.718 5.718 10 C 0.133 3.867 11 C 0.054 3.946 12 N -0.541 5.541 13 C 0.051 3.949 14 C 0.144 3.856 15 N -0.623 5.623 16 C -0.253 4.253 17 H 0.049 0.951 18 C -0.031 4.031 19 N -0.956 5.956 20 Si 0.950 3.050 21 H -0.266 1.266 22 H -0.309 1.309 23 H -0.269 1.269 24 C 0.123 3.877 25 C 0.057 3.943 26 C 0.057 3.943 27 C -0.110 4.110 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.416 0.584 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.026 0.974 44 H 0.092 0.908 45 H 0.033 0.967 46 H 0.059 0.941 47 H 0.262 0.738 48 H 0.032 0.968 49 H 0.056 0.944 50 H 0.100 0.900 51 H 0.029 0.971 52 H 0.087 0.913 53 H 0.045 0.955 54 H 0.084 0.916 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.694 -28.431 12.318 37.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.146 4.146 4 C -0.071 4.071 5 N -0.268 5.268 6 C -0.089 4.089 7 C 0.294 3.706 8 O -0.446 6.446 9 N -0.372 5.372 10 C 0.009 3.991 11 C -0.074 4.074 12 N -0.266 5.266 13 C -0.078 4.078 14 C 0.019 3.981 15 N -0.348 5.348 16 C -0.382 4.382 17 H 0.067 0.933 18 C -0.226 4.226 19 N -0.602 5.602 20 Si 0.778 3.222 21 H -0.192 1.192 22 H -0.238 1.238 23 H -0.194 1.194 24 C -0.002 4.002 25 C -0.073 4.073 26 C -0.070 4.070 27 C -0.148 4.148 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.253 0.747 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.110 0.890 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.050 0.950 49 H 0.074 0.926 50 H 0.118 0.882 51 H 0.048 0.952 52 H 0.106 0.894 53 H 0.063 0.937 54 H 0.103 0.897 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.653 -27.220 12.111 36.831 hybrid contribution 1.561 0.052 0.403 1.613 sum -20.092 -27.169 12.514 36.034 Atomic orbital electron populations 1.21787 0.94546 1.02154 1.01660 1.21187 0.96153 0.95191 0.98505 1.21587 0.94117 0.97337 1.01552 1.22086 0.96560 0.98690 0.89715 1.61509 1.10803 1.15382 1.39143 1.21998 0.89662 0.92534 1.04673 1.21132 0.81994 0.91673 0.75803 1.90710 1.50383 1.53616 1.49899 1.45784 1.07633 1.10390 1.73436 1.21058 0.94611 0.82482 1.00997 1.22194 0.94108 0.88401 1.02720 1.61761 1.16668 1.20686 1.27481 1.22522 1.00521 0.96216 0.88567 1.21176 0.84225 0.93937 0.98728 1.44528 1.08636 1.61548 1.20105 1.18845 1.09678 1.20312 0.89390 0.93310 1.25958 0.96770 0.98124 1.01782 1.69955 1.11200 1.40880 1.38184 0.85867 0.77927 0.76673 0.81701 1.19152 1.23803 1.19444 1.21479 0.97433 0.93760 0.87501 1.22440 0.87268 0.96209 1.01348 1.22180 0.96306 0.86743 1.01773 1.21645 0.94317 1.01009 0.97818 0.93264 0.91714 0.92589 0.90930 0.91322 0.92978 0.94406 0.92246 0.85426 0.89608 0.74688 0.92849 0.92331 0.88286 0.93408 0.95550 0.89003 0.94933 0.92236 0.92857 0.95000 0.92572 0.88212 0.95246 0.89445 0.93702 0.89737 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.21 71.98 0.66 -0.81 16 2 C -0.09 -1.06 2.79 -10.71 -0.03 -1.09 16 3 C -0.11 -1.73 5.38 30.65 0.16 -1.56 16 4 C 0.06 1.00 5.12 86.32 0.44 1.44 16 5 N -0.54 -8.74 4.34 -900.94 -3.91 -12.65 16 6 C 0.04 0.52 5.45 85.55 0.47 0.98 16 7 C 0.51 10.06 7.35 87.65 0.64 10.70 16 8 O -0.57 -17.19 14.72 -3.05 -0.04 -17.23 16 9 N -0.72 -11.17 5.56 -463.07 -2.57 -13.75 16 10 C 0.13 2.81 5.60 86.38 0.48 3.29 16 11 C 0.05 1.08 5.08 86.30 0.44 1.52 16 12 N -0.54 -15.79 4.63 -895.24 -4.15 -19.94 16 13 C 0.05 1.63 5.46 86.38 0.47 2.10 16 14 C 0.14 5.81 6.69 86.35 0.58 6.39 16 15 N -0.62 -30.02 2.77 -698.13 -1.93 -31.95 16 16 C -0.25 -14.62 10.05 84.03 0.84 -13.77 16 17 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 18 C -0.03 -1.85 5.24 84.86 0.44 -1.40 16 19 N -0.96 -60.46 13.97 21.65 0.30 -60.16 16 20 Si 0.95 47.10 24.33 68.60 1.67 48.77 16 21 H -0.27 -12.10 6.54 99.48 0.65 -11.45 16 22 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 23 H -0.27 -13.18 6.79 99.48 0.68 -12.51 16 24 C 0.12 5.23 4.36 86.35 0.38 5.60 16 25 C 0.06 1.82 5.62 86.38 0.49 2.31 16 26 C 0.06 0.60 5.46 86.32 0.47 1.07 16 27 C -0.11 -1.19 5.38 30.65 0.16 -1.03 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 1.39 6.07 -2.38 -0.01 1.38 16 36 H 0.13 0.98 7.98 -2.39 -0.02 0.96 16 37 H 0.09 0.65 8.12 -2.38 -0.02 0.63 16 38 H 0.42 3.41 8.47 -92.71 -0.79 2.62 16 39 H 0.05 1.32 6.40 -2.39 -0.02 1.31 16 40 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.10 1.59 7.97 -2.39 -0.02 1.58 16 42 H 0.05 0.90 8.12 -2.39 -0.02 0.88 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.09 2.56 6.16 -2.39 -0.01 2.54 16 45 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 2.41 7.95 -2.39 -0.02 2.39 16 47 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 48 H 0.03 1.36 6.97 -2.38 -0.02 1.34 16 49 H 0.06 2.58 4.90 -2.38 -0.01 2.57 16 50 H 0.10 2.57 7.99 -2.39 -0.02 2.55 16 51 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.09 0.72 8.01 -2.39 -0.02 0.70 16 53 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 54 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 55 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -75.72 410.47 -3.56 -79.28 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -0.03 Total: 11.88 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 7.11 Total: 15.75 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -12.26 Total: -138.45 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.04 Total: -17.23 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.67 Total: 48.77 kcal Total: -75.72 -3.56 -79.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713077689.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.111 kcal (2) G-P(sol) polarization free energy of solvation -75.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds