Wall clock time and date at job start Tue Mar 31 2020 22:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36932 * 120.00158 * 2 1 4 4 H 1.08004 * 120.00371 * 158.13106 * 3 2 1 5 5 C 1.38817 * 119.99994 * 338.13308 * 3 2 1 6 6 N 1.31613 * 119.99682 * 347.97980 * 5 3 2 7 7 Si 1.86799 * 119.99881 * 167.70685 * 5 3 2 8 8 H 1.48495 * 109.47478 * 90.00099 * 7 5 3 9 9 H 1.48501 * 109.46721 * 209.99803 * 7 5 3 10 10 H 1.48493 * 109.47113 * 329.99747 * 7 5 3 11 11 C 1.46500 * 119.99875 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47028 * 269.99282 * 11 2 1 13 13 H 1.08993 * 109.49561 * 305.00381 * 12 11 2 14 14 C 1.53039 * 109.49747 * 184.93436 * 12 11 2 15 15 C 1.53040 * 109.53577 * 178.68301 * 14 12 11 16 16 C 1.53187 * 109.31146 * 61.36886 * 15 14 12 17 17 N 1.46925 * 108.77747 * 305.36452 * 16 15 14 18 18 C 1.34782 * 120.63183 * 233.61211 * 17 16 15 19 19 O 1.21281 * 119.99900 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00032 * 359.97438 * 18 17 16 21 21 O 1.42894 * 109.47159 * 180.02562 * 20 18 17 22 22 C 1.42904 * 114.00168 * 180.02562 * 21 20 18 23 23 C 1.53002 * 109.47099 * 269.99862 * 22 21 20 24 24 C 1.52997 * 109.47281 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.46930 * 59.99777 * 24 23 22 26 26 C 1.52998 * 109.47536 * 299.99914 * 25 24 23 27 27 C 1.52995 * 109.47331 * 149.99877 * 22 21 20 28 28 C 1.46931 * 118.76718 * 53.58420 * 17 16 15 29 29 H 1.08997 * 109.47453 * 84.82484 * 1 2 3 30 30 H 1.09004 * 109.46994 * 204.82093 * 1 2 3 31 31 H 1.08998 * 109.47212 * 324.81984 * 1 2 3 32 32 H 0.97003 * 120.00103 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47799 * 29.99374 * 11 2 1 34 34 H 1.09002 * 109.47257 * 149.99887 * 11 2 1 35 35 H 1.08992 * 109.46520 * 298.70518 * 14 12 11 36 36 H 1.09000 * 109.46001 * 58.68538 * 14 12 11 37 37 H 1.09000 * 109.50179 * 181.31809 * 15 14 12 38 38 H 1.08997 * 109.50156 * 301.41766 * 15 14 12 39 39 H 1.09004 * 109.59096 * 65.14852 * 16 15 14 40 40 H 1.09004 * 109.58856 * 185.57545 * 16 15 14 41 41 H 1.09004 * 109.47285 * 300.00295 * 20 18 17 42 42 H 1.09002 * 109.46991 * 59.99887 * 20 18 17 43 43 H 1.08997 * 109.47011 * 29.99735 * 22 21 20 44 44 H 1.08997 * 109.47085 * 299.99827 * 23 22 21 45 45 H 1.08999 * 109.47120 * 59.99857 * 23 22 21 46 46 H 1.09003 * 109.47148 * 300.00559 * 24 23 22 47 47 H 1.08995 * 109.47653 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.47374 * 179.97438 * 25 24 23 49 49 H 1.08997 * 109.46908 * 60.00144 * 25 24 23 50 50 H 1.08997 * 109.47210 * 300.00045 * 26 25 24 51 51 H 1.09007 * 109.47261 * 179.97438 * 26 25 24 52 52 H 1.09000 * 109.47428 * 299.99895 * 27 22 21 53 53 H 1.08997 * 109.47190 * 59.99967 * 27 22 21 54 54 H 1.08994 * 109.62291 * 186.64612 * 28 17 16 55 55 H 1.09007 * 109.55772 * 66.21441 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1714 1.2195 0.3484 5 6 1.5305 2.3448 -0.4478 6 7 0.3828 2.2725 -1.0879 7 14 2.3225 4.0074 -0.1350 8 1 3.2225 4.3477 -1.2661 9 1 1.2660 5.0440 -0.0140 10 1 3.1085 3.9524 1.1237 11 6 2.1974 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 1 2.9643 -0.9142 1.9814 14 6 3.3227 -2.9699 1.4437 15 6 3.6057 -3.3942 2.8867 16 6 2.2831 -3.7196 3.5877 17 7 1.3852 -2.5632 3.4639 18 6 0.8186 -2.0136 4.5563 19 8 0.0796 -1.0589 4.4409 20 6 1.1034 -2.5853 5.9213 21 8 0.3920 -1.8369 6.9090 22 6 0.5945 -2.2991 8.2460 23 6 -0.4600 -3.3543 8.5861 24 6 -0.2428 -3.8496 10.0172 25 6 -0.3663 -2.6737 10.9882 26 6 0.6882 -1.6185 10.6482 27 6 0.4705 -1.1230 9.2166 28 6 1.1168 -2.0164 2.1268 29 1 -0.3634 0.0927 -1.0234 30 1 -0.3633 -0.9328 0.4314 31 1 -0.3633 0.8399 0.5921 32 1 -0.0497 3.0823 -1.4012 33 1 1.6084 -2.0282 -0.5146 34 1 3.1499 -1.1382 -0.5144 35 1 2.8001 -3.7734 0.9249 36 1 4.2642 -2.7615 0.9355 37 1 4.2447 -4.2772 2.8876 38 1 4.1063 -2.5818 3.4133 39 1 1.8248 -4.5899 3.1179 40 1 2.4694 -3.9263 4.6416 41 1 0.7820 -3.6263 5.9535 42 1 2.1731 -2.5289 6.1228 43 1 1.5885 -2.7380 8.3320 44 1 -1.4540 -2.9154 8.5000 45 1 -0.3717 -4.1922 7.8946 46 1 0.7513 -4.2885 10.1029 47 1 -0.9937 -4.6016 10.2594 48 1 -0.2121 -3.0266 12.0079 49 1 -1.3603 -2.2347 10.9025 50 1 1.6822 -2.0575 10.7338 51 1 0.5998 -0.7805 11.3397 52 1 1.2218 -0.3712 8.9744 53 1 -0.5235 -0.6841 9.1306 54 1 0.5341 -1.0997 2.2164 55 1 0.5630 -2.7477 1.5379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713131689.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:37 Heat of formation + Delta-G solvation = -100.079582 kcal Electronic energy + Delta-G solvation = -30780.882248 eV Core-core repulsion = 26816.724786 eV Total energy + Delta-G solvation = -3964.157462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.34790 -40.08177 -38.89104 -37.30210 -37.14238 -34.55789 -33.17739 -31.85480 -31.70662 -30.97471 -29.16875 -28.07435 -27.11232 -25.87025 -23.91774 -23.52962 -23.11805 -22.46008 -21.34858 -20.82479 -19.94247 -18.71979 -18.47847 -17.55664 -17.05803 -17.03746 -16.86995 -16.18002 -15.89937 -15.59182 -15.43295 -15.27716 -15.13024 -14.87093 -14.78910 -14.63962 -14.16401 -13.95736 -13.93394 -13.79536 -13.54224 -13.19409 -13.09612 -13.07273 -13.04296 -12.79813 -12.60988 -12.32408 -12.10276 -12.07274 -11.98920 -11.97385 -11.87119 -11.68935 -11.56684 -11.50279 -11.47911 -11.30806 -11.24610 -10.76498 -10.60746 -10.42780 -9.62452 -8.76790 -7.83510 -5.31201 1.39672 1.43404 1.51598 1.54841 1.73659 2.48169 2.81499 3.29397 3.50015 3.65883 3.77228 3.80511 3.90287 3.97713 4.05911 4.08377 4.12448 4.15020 4.19609 4.26671 4.32164 4.34722 4.39668 4.52312 4.55370 4.57577 4.65003 4.67094 4.74913 4.79360 4.88788 4.90617 4.94091 4.96131 5.02868 5.06000 5.11535 5.16270 5.22418 5.23057 5.23578 5.30194 5.35634 5.38634 5.44470 5.50751 5.55903 5.58467 5.61112 5.68117 6.16625 6.31554 6.45918 7.13871 7.17700 7.87637 8.30503 9.19509 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.002597 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.866278 B =10777.282876 C =12073.468031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.619 5.619 3 C -0.256 4.256 4 H 0.068 0.932 5 C -0.060 4.060 6 N -0.941 5.941 7 Si 0.966 3.034 8 H -0.277 1.277 9 H -0.295 1.295 10 H -0.276 1.276 11 C 0.155 3.845 12 C -0.108 4.108 13 H 0.036 0.964 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.099 3.901 17 N -0.608 5.608 18 C 0.497 3.503 19 O -0.585 6.585 20 C 0.056 3.944 21 O -0.397 6.397 22 C 0.085 3.915 23 C -0.141 4.141 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.110 4.110 27 C -0.121 4.121 28 C 0.128 3.872 29 H 0.005 0.995 30 H 0.027 0.973 31 H 0.003 0.997 32 H 0.247 0.753 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.053 0.947 50 H 0.077 0.923 51 H 0.072 0.928 52 H 0.059 0.941 53 H 0.051 0.949 54 H 0.050 0.950 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 -21.962 22.637 32.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.342 5.342 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.254 4.254 6 N -0.588 5.588 7 Si 0.794 3.206 8 H -0.203 1.203 9 H -0.222 1.222 10 H -0.201 1.201 11 C 0.029 3.971 12 C -0.130 4.130 13 H 0.055 0.945 14 C -0.146 4.146 15 C -0.166 4.166 16 C -0.022 4.022 17 N -0.342 5.342 18 C 0.286 3.714 19 O -0.464 6.464 20 C -0.023 4.023 21 O -0.316 6.316 22 C 0.028 3.972 23 C -0.178 4.178 24 C -0.149 4.149 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.159 4.159 28 C 0.006 3.994 29 H 0.023 0.977 30 H 0.046 0.954 31 H 0.021 0.979 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.072 0.928 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.078 0.922 53 H 0.070 0.930 54 H 0.069 0.931 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.499 -21.196 22.479 31.382 hybrid contribution -0.147 1.698 -0.442 1.760 sum 5.353 -19.498 22.038 29.908 Atomic orbital electron populations 1.20492 0.83238 0.95277 0.97118 1.44117 1.01839 1.02000 1.86262 1.19454 0.97557 0.86889 1.34729 0.91472 1.25790 0.98553 1.01858 0.99196 1.70231 1.19391 1.27236 1.41963 0.85286 0.77309 0.79907 0.78069 1.20322 1.22180 1.20130 1.20959 0.95805 0.86533 0.93833 1.22000 0.95307 0.97920 0.97770 0.94492 1.21523 0.99468 0.95812 0.97820 1.21915 0.96865 1.02824 0.95038 1.22189 0.89616 0.86925 1.03486 1.48294 1.47247 1.32925 1.05703 1.21196 0.79837 0.82978 0.87434 1.90741 1.38993 1.29585 1.87103 1.22359 0.98488 0.96620 0.84873 1.88058 1.70406 1.56957 1.16174 1.22400 0.99336 0.95159 0.80324 1.22043 0.99032 0.98343 0.98421 1.21486 1.03045 0.97772 0.92599 1.21603 0.98865 0.95901 0.99785 1.21497 1.00128 0.99209 0.93906 1.21642 1.01953 0.97160 0.95131 1.21497 0.97550 0.98321 0.82039 0.97702 0.95421 0.97857 0.94419 0.92771 0.93123 0.90165 0.91173 0.87004 0.92822 0.88828 0.87101 0.87068 0.87602 0.89759 0.93059 0.90980 0.90403 0.90834 0.90251 0.92798 0.90457 0.90973 0.92225 0.92992 0.93136 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.02 7.94 127.77 1.01 11.03 16 2 N -0.62 -32.96 2.77 -726.94 -2.01 -34.98 16 3 C -0.26 -14.99 9.67 84.04 0.81 -14.18 16 4 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 5 C -0.06 -3.59 5.12 84.86 0.43 -3.15 16 6 N -0.94 -59.59 10.59 21.65 0.23 -59.36 16 7 Si 0.97 48.52 29.57 68.60 2.03 50.55 16 8 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 9 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 11 C 0.15 6.29 5.14 86.38 0.44 6.73 16 12 C -0.11 -3.68 2.54 -10.71 -0.03 -3.71 16 13 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 14 C -0.11 -2.38 5.17 30.62 0.16 -2.22 16 15 C -0.13 -2.03 6.08 30.67 0.19 -1.84 16 16 C 0.10 1.52 6.34 86.36 0.55 2.07 16 17 N -0.61 -17.16 2.97 -818.88 -2.43 -19.60 16 18 C 0.50 16.52 7.77 87.66 0.68 17.20 16 19 O -0.58 -27.59 15.91 16.00 0.25 -27.34 16 20 C 0.06 1.20 4.57 71.24 0.33 1.53 16 21 O -0.40 -10.96 9.52 -129.94 -1.24 -12.19 16 22 C 0.08 1.54 2.61 30.59 0.08 1.62 16 23 C -0.14 -2.14 5.54 30.59 0.17 -1.97 16 24 C -0.11 -1.14 5.92 30.59 0.18 -0.96 16 25 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 26 C -0.11 -1.33 5.93 30.61 0.18 -1.15 16 27 C -0.12 -2.26 5.58 30.61 0.17 -2.08 16 28 C 0.13 4.55 4.45 86.36 0.38 4.93 16 29 H 0.00 0.28 7.37 -2.39 -0.02 0.26 16 30 H 0.03 1.31 6.28 -2.39 -0.01 1.29 16 31 H 0.00 0.16 7.24 -2.39 -0.02 0.14 16 32 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 33 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 34 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.11 0.98 5.93 -2.38 -0.01 0.96 16 41 H 0.11 1.56 7.67 -2.39 -0.02 1.54 16 42 H 0.11 1.63 7.63 -2.39 -0.02 1.61 16 43 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 0.95 7.87 -2.39 -0.02 0.93 16 46 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.05 2.37 5.35 -2.39 -0.01 2.36 16 55 H 0.07 2.30 8.10 -2.38 -0.02 2.28 16 Total: -1.00 -84.02 414.59 3.58 -80.43 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.83 Total: 9.80 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 5.93 Total: 12.69 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -4.22 Total: -113.94 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.98 Total: -39.53 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -84.02 3.58 -80.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713131689.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.646 kcal (2) G-P(sol) polarization free energy of solvation -84.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds