Wall clock time and date at job start Tue Mar 31 2020 22:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36945 * 119.99746 * 2 1 4 4 H 1.08004 * 119.99300 * 202.18576 * 3 2 1 5 5 C 1.38807 * 119.99831 * 22.18629 * 3 2 1 6 6 N 1.31612 * 120.00154 * 11.51551 * 5 3 2 7 7 Si 1.86801 * 119.99779 * 191.50676 * 5 3 2 8 8 H 1.48504 * 109.46921 * 60.00422 * 7 5 3 9 9 H 1.48495 * 109.47240 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47208 * 300.00289 * 7 5 3 11 11 C 1.46501 * 120.00004 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46735 * 269.99347 * 11 2 1 13 13 H 1.08998 * 109.52046 * 54.92326 * 12 11 2 14 14 C 1.53039 * 109.49344 * 175.00330 * 12 11 2 15 15 C 1.53047 * 109.52706 * 181.31077 * 14 12 11 16 16 C 1.53192 * 109.31205 * 298.64090 * 15 14 12 17 17 N 1.46927 * 108.77352 * 54.63288 * 16 15 14 18 18 C 1.34781 * 120.63295 * 126.36991 * 17 16 15 19 19 O 1.21275 * 120.00637 * 179.97438 * 18 17 16 20 20 C 1.50703 * 119.99509 * 0.02562 * 18 17 16 21 21 O 1.42901 * 109.46813 * 180.02562 * 20 18 17 22 22 C 1.42897 * 113.99583 * 179.97438 * 21 20 18 23 23 C 1.53008 * 109.47339 * 269.99723 * 22 21 20 24 24 C 1.52996 * 109.47056 * 180.02562 * 23 22 21 25 25 C 1.53008 * 109.47299 * 60.00311 * 24 23 22 26 26 C 1.52999 * 109.46967 * 299.99927 * 25 24 23 27 27 C 1.52999 * 109.47362 * 59.99734 * 26 25 24 28 28 C 1.46927 * 118.74007 * 306.39179 * 17 16 15 29 29 H 1.08998 * 109.46991 * 274.21961 * 1 2 3 30 30 H 1.09001 * 109.47770 * 34.22178 * 1 2 3 31 31 H 1.09003 * 109.47284 * 154.22568 * 1 2 3 32 32 H 0.97005 * 120.00125 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47074 * 150.00063 * 11 2 1 34 34 H 1.08992 * 109.47448 * 29.99750 * 11 2 1 35 35 H 1.08997 * 109.46519 * 61.29933 * 14 12 11 36 36 H 1.09001 * 109.46072 * 301.32421 * 14 12 11 37 37 H 1.09001 * 109.49087 * 58.58952 * 15 14 12 38 38 H 1.08997 * 109.50040 * 178.65545 * 15 14 12 39 39 H 1.08993 * 109.58465 * 174.41468 * 16 15 14 40 40 H 1.08996 * 109.58509 * 294.84976 * 16 15 14 41 41 H 1.09009 * 109.46835 * 299.99722 * 20 18 17 42 42 H 1.09000 * 109.47536 * 59.99483 * 20 18 17 43 43 H 1.09004 * 109.47728 * 30.00087 * 22 21 20 44 44 H 1.09005 * 109.46776 * 300.00310 * 23 22 21 45 45 H 1.08990 * 109.46894 * 60.00014 * 23 22 21 46 46 H 1.08997 * 109.47348 * 300.00322 * 24 23 22 47 47 H 1.09006 * 109.46653 * 179.97438 * 24 23 22 48 48 H 1.08996 * 109.47075 * 179.97438 * 25 24 23 49 49 H 1.08997 * 109.46912 * 59.99743 * 25 24 23 50 50 H 1.09005 * 109.46626 * 299.99946 * 26 25 24 51 51 H 1.09000 * 109.47074 * 180.02562 * 26 25 24 52 52 H 1.08997 * 109.46957 * 180.02562 * 27 26 25 53 53 H 1.08997 * 109.47040 * 59.99864 * 27 26 25 54 54 H 1.08999 * 109.58641 * 173.40245 * 28 17 16 55 55 H 1.08999 * 109.58513 * 293.67737 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1697 1.2206 -0.3532 5 6 1.5326 2.3436 0.4539 6 7 0.3831 2.2703 1.0907 7 14 2.3339 4.0054 0.1613 8 1 2.4885 4.2301 -1.2985 9 1 1.4812 5.0748 0.7395 10 1 3.6692 4.0323 0.8104 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7109 1.4418 13 1 1.5069 -1.7545 1.9820 14 6 3.1063 -3.0946 1.4437 15 6 3.3320 -3.5517 2.8868 16 6 4.2761 -2.5697 3.5876 17 7 3.7247 -1.2134 3.4634 18 6 3.5324 -0.4476 4.5557 19 8 3.0771 0.6704 4.4400 20 6 3.8845 -0.9803 5.9208 21 8 3.5915 0.0100 6.9085 22 6 3.8899 -0.3967 8.2455 23 6 2.6620 -1.0725 8.8591 24 6 2.9813 -1.5074 10.2908 25 6 3.3582 -0.2809 11.1243 26 6 4.5861 0.3949 10.5107 27 6 4.2668 0.8298 9.0790 28 6 3.3865 -0.7081 2.1259 29 1 -0.3633 0.0756 1.0249 30 1 -0.3635 0.8497 -0.5779 31 1 -0.3634 -0.9254 -0.4469 32 1 -0.0483 3.0792 1.4076 33 1 3.1499 -1.1382 -0.5143 34 1 1.6084 -2.0281 -0.5147 35 1 4.0635 -3.0448 0.9248 36 1 2.4543 -3.8050 0.9355 37 1 2.3780 -3.5780 3.4134 38 1 3.7758 -4.5473 2.8879 39 1 4.3617 -2.8341 4.6414 40 1 5.2587 -2.6090 3.1176 41 1 3.2999 -1.8780 6.1223 42 1 4.9465 -1.2234 5.9532 43 1 4.7235 -1.0989 8.2343 44 1 1.8284 -0.3702 8.8703 45 1 2.3932 -1.9459 8.2651 46 1 3.8150 -2.2094 10.2799 47 1 2.1063 -1.9884 10.7280 48 1 3.5852 -0.5907 12.1444 49 1 2.5245 0.4211 11.1352 50 1 5.4198 -0.3073 10.4999 51 1 4.8549 1.2684 11.1048 52 1 5.1418 1.3108 8.6418 53 1 3.4332 1.5318 9.0899 54 1 2.8854 0.2558 2.2154 55 1 4.2969 -0.5932 1.5377 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713131690.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:41 Heat of formation + Delta-G solvation = -99.545076 kcal Electronic energy + Delta-G solvation = -31195.666169 eV Core-core repulsion = 27231.531885 eV Total energy + Delta-G solvation = -3964.134284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.29231 -40.07778 -38.84170 -37.29168 -37.12683 -34.49329 -33.05346 -31.94453 -31.73302 -30.98148 -29.05847 -27.95799 -27.10256 -25.80930 -24.00355 -23.53957 -23.12998 -22.35643 -21.27444 -20.79929 -19.97193 -18.71045 -18.42524 -17.58474 -17.03368 -16.91396 -16.82557 -16.15830 -15.80016 -15.60922 -15.46494 -15.23853 -15.02297 -14.94163 -14.82123 -14.59619 -14.05532 -14.00100 -13.93052 -13.72682 -13.50533 -13.21111 -13.13182 -13.06242 -13.00301 -12.79616 -12.56637 -12.27864 -12.08856 -12.07622 -12.03220 -11.98515 -11.83611 -11.63529 -11.53280 -11.51396 -11.47907 -11.26577 -11.22268 -10.68831 -10.57014 -10.44027 -9.57039 -8.73562 -7.81162 -5.25342 1.39026 1.43265 1.47962 1.60073 1.78622 2.50835 2.83429 3.35014 3.53072 3.70161 3.75737 3.79724 3.91331 4.02254 4.04863 4.06921 4.16045 4.17414 4.21520 4.25472 4.30645 4.33334 4.44241 4.53932 4.56406 4.57894 4.65371 4.68705 4.80492 4.86088 4.89549 4.93583 4.95286 5.02111 5.05588 5.09698 5.10482 5.21311 5.22249 5.22555 5.28390 5.28857 5.35033 5.37426 5.49724 5.52656 5.57481 5.64815 5.66394 5.74833 6.18018 6.34683 6.52213 7.18066 7.25488 7.91910 8.34230 9.22770 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.003084 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.287474 B = 9077.743473 C =10642.086569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.618 5.618 3 C -0.244 4.244 4 H 0.070 0.930 5 C -0.053 4.053 6 N -0.936 5.936 7 Si 0.955 3.045 8 H -0.269 1.269 9 H -0.300 1.300 10 H -0.285 1.285 11 C 0.153 3.847 12 C -0.106 4.106 13 H 0.030 0.970 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.491 3.509 19 O -0.583 6.583 20 C 0.058 3.942 21 O -0.399 6.399 22 C 0.085 3.915 23 C -0.143 4.143 24 C -0.110 4.110 25 C -0.124 4.124 26 C -0.108 4.108 27 C -0.121 4.121 28 C 0.133 3.867 29 H -0.009 1.009 30 H 0.017 0.983 31 H 0.031 0.969 32 H 0.241 0.759 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.051 0.949 50 H 0.080 0.920 51 H 0.073 0.927 52 H 0.062 0.938 53 H 0.048 0.952 54 H 0.053 0.947 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.074 -18.546 16.703 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.341 5.341 3 C -0.374 4.374 4 H 0.088 0.912 5 C -0.248 4.248 6 N -0.583 5.583 7 Si 0.784 3.216 8 H -0.194 1.194 9 H -0.226 1.226 10 H -0.212 1.212 11 C 0.027 3.973 12 C -0.128 4.128 13 H 0.048 0.952 14 C -0.146 4.146 15 C -0.166 4.166 16 C -0.024 4.024 17 N -0.344 5.344 18 C 0.279 3.721 19 O -0.462 6.462 20 C -0.021 4.021 21 O -0.318 6.318 22 C 0.028 3.972 23 C -0.181 4.181 24 C -0.148 4.148 25 C -0.162 4.162 26 C -0.146 4.146 27 C -0.159 4.159 28 C 0.011 3.989 29 H 0.009 0.991 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.131 0.869 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.070 0.930 50 H 0.098 0.902 51 H 0.092 0.908 52 H 0.081 0.919 53 H 0.067 0.933 54 H 0.071 0.929 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.659 -17.649 16.643 26.915 hybrid contribution -0.381 1.706 -0.230 1.763 sum 11.278 -15.944 16.413 25.510 Atomic orbital electron populations 1.20469 0.83173 0.95914 0.96855 1.44200 1.01970 1.01955 1.86002 1.19281 0.97579 0.86284 1.34292 0.91242 1.25676 0.98447 1.01583 0.99116 1.70224 1.19349 1.26809 1.41880 0.85523 0.77445 0.80643 0.78002 1.19415 1.22619 1.21193 1.21090 0.95997 0.86654 0.93579 1.21984 0.96795 0.95615 0.98415 0.95174 1.21549 1.01313 0.94100 0.97622 1.21915 0.99657 0.99720 0.95298 1.22179 0.97739 0.79081 1.03363 1.48346 1.63255 1.16835 1.05932 1.21271 0.77955 0.85258 0.87583 1.90792 1.45857 1.22522 1.87070 1.22344 1.02938 0.92008 0.84778 1.88077 1.86852 1.40669 1.16208 1.22419 0.97456 0.97134 0.80220 1.22067 0.97852 1.00297 0.97907 1.21482 1.02408 0.97959 0.92910 1.21611 0.97692 0.97180 0.99706 1.21483 0.98635 1.01268 0.93197 1.21639 1.01239 0.96838 0.96140 1.21361 0.97781 0.98353 0.81420 0.99106 0.96427 0.95036 0.94971 0.92802 0.91795 0.90437 0.90510 0.92914 0.86872 0.87307 0.89157 0.87847 0.86898 0.89401 0.93513 0.91350 0.90114 0.90978 0.89990 0.93042 0.90169 0.90792 0.91878 0.93346 0.92876 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.57 9.01 127.77 1.15 10.73 16 2 N -0.62 -32.20 2.82 -726.94 -2.05 -34.24 16 3 C -0.24 -14.03 7.78 84.03 0.65 -13.38 16 4 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 5 C -0.05 -3.26 5.13 84.86 0.44 -2.82 16 6 N -0.94 -61.03 10.58 21.65 0.23 -60.80 16 7 Si 0.95 49.97 29.57 68.60 2.03 52.00 16 8 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 9 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 10 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 11 C 0.15 6.07 5.21 86.38 0.45 6.52 16 12 C -0.11 -3.85 2.54 -10.73 -0.03 -3.88 16 13 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 14 C -0.11 -2.49 5.17 30.62 0.16 -2.33 16 15 C -0.13 -2.28 6.08 30.67 0.19 -2.09 16 16 C 0.10 1.85 6.34 86.36 0.55 2.39 16 17 N -0.61 -20.40 2.97 -818.97 -2.43 -22.83 16 18 C 0.49 19.16 7.78 87.66 0.68 19.85 16 19 O -0.58 -31.97 15.91 16.02 0.25 -31.71 16 20 C 0.06 1.52 4.57 71.24 0.33 1.84 16 21 O -0.40 -12.71 9.52 -129.94 -1.24 -13.94 16 22 C 0.08 1.80 2.61 30.60 0.08 1.87 16 23 C -0.14 -2.74 5.54 30.60 0.17 -2.57 16 24 C -0.11 -1.41 5.92 30.60 0.18 -1.23 16 25 C -0.12 -1.60 5.92 30.60 0.18 -1.42 16 26 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 27 C -0.12 -2.52 5.57 30.60 0.17 -2.35 16 28 C 0.13 5.54 5.08 86.35 0.44 5.98 16 29 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 30 H 0.02 0.98 7.18 -2.39 -0.02 0.96 16 31 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 32 H 0.24 15.62 8.31 -92.70 -0.77 14.85 16 33 H 0.05 2.03 8.03 -2.39 -0.02 2.01 16 34 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.11 1.33 5.93 -2.39 -0.01 1.32 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 2.02 7.42 -2.38 -0.02 2.00 16 42 H 0.11 1.99 7.89 -2.39 -0.02 1.97 16 43 H 0.09 1.33 7.79 -2.38 -0.02 1.31 16 44 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 45 H 0.07 1.21 7.87 -2.39 -0.02 1.19 16 46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 51 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 53 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.05 3.01 5.61 -2.39 -0.01 3.00 16 55 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -87.02 416.15 3.58 -83.44 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.82 Total: 12.30 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 5.96 Total: 15.80 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -4.25 Total: -117.88 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.98 Total: -45.65 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.03 Total: 52.00 kcal Total: -87.02 3.58 -83.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713131690.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.108 kcal (2) G-P(sol) polarization free energy of solvation -87.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds