Wall clock time and date at job start Tue Mar 31 2020 22:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99774 * 2 1 4 4 C 1.53002 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47061 * 300.00089 * 4 3 2 6 6 O 1.21284 * 119.99770 * 239.99794 * 5 4 3 7 7 N 1.34780 * 120.00162 * 60.00212 * 5 4 3 8 8 C 1.46492 * 119.99930 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47204 * 155.00105 * 8 7 5 10 10 C 1.53000 * 109.47233 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47060 * 299.99657 * 10 9 8 12 12 N 1.46506 * 109.47289 * 300.00274 * 11 10 9 13 13 C 1.36928 * 120.00097 * 204.99657 * 12 11 10 14 14 H 1.07997 * 120.00324 * 0.02562 * 13 12 11 15 15 C 1.38815 * 120.00183 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00381 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99782 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47036 * 89.99690 * 17 15 13 19 19 H 1.48500 * 109.46965 * 209.99935 * 17 15 13 20 20 H 1.48504 * 109.46872 * 329.99870 * 17 15 13 21 21 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 22 22 C 1.52997 * 109.47244 * 274.99857 * 8 7 5 23 23 C 1.53000 * 109.47256 * 60.00159 * 4 3 2 24 24 C 1.53002 * 109.47256 * 179.97438 * 23 4 3 25 25 C 1.52999 * 109.46858 * 299.99855 * 24 23 4 26 26 C 1.53000 * 109.47069 * 60.00030 * 25 24 23 27 27 C 1.52999 * 109.46858 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47275 * 60.00328 * 1 2 3 29 29 H 1.09008 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47275 * 299.99464 * 1 2 3 31 31 H 1.08995 * 109.46784 * 60.00400 * 3 2 1 32 32 H 1.08996 * 109.47234 * 299.99772 * 3 2 1 33 33 H 0.96998 * 119.99716 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47696 * 34.99761 * 8 7 5 35 35 H 1.08992 * 109.47063 * 59.99836 * 9 8 7 36 36 H 1.09004 * 109.46733 * 299.99549 * 9 8 7 37 37 H 1.09002 * 109.47398 * 59.99826 * 10 9 8 38 38 H 1.09001 * 109.47194 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 40 40 H 0.97004 * 119.99411 * 25.00097 * 12 11 10 41 41 H 0.97000 * 119.99936 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.47486 * 180.02562 * 21 11 10 43 43 H 1.09002 * 109.46716 * 60.00091 * 21 11 10 44 44 H 1.09002 * 109.47153 * 300.00242 * 22 8 7 45 45 H 1.09001 * 109.47289 * 60.00326 * 22 8 7 46 46 H 1.09007 * 109.47091 * 299.99642 * 23 4 3 47 47 H 1.08996 * 109.47449 * 59.99996 * 23 4 3 48 48 H 1.08993 * 109.47358 * 179.97438 * 24 23 4 49 49 H 1.09004 * 109.47175 * 59.99795 * 24 23 4 50 50 H 1.08996 * 109.47205 * 299.99612 * 25 24 23 51 51 H 1.09000 * 109.46920 * 179.97438 * 25 24 23 52 52 H 1.08997 * 109.47376 * 179.97438 * 26 25 24 53 53 H 1.09004 * 109.47197 * 59.99918 * 26 25 24 54 54 H 1.08996 * 109.47205 * 299.99612 * 27 4 3 55 55 H 1.09004 * 109.46958 * 60.00348 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9806 0.4366 1.2295 6 8 4.7226 0.9690 2.0276 7 7 3.5542 -0.8241 1.4427 8 6 3.9874 -1.5515 2.6382 9 6 2.9554 -2.6273 2.9826 10 6 3.4075 -3.3866 4.2316 11 6 4.7621 -4.0460 3.9651 12 7 4.6382 -4.9806 2.8436 13 6 5.5054 -6.0343 2.7314 14 1 6.2805 -6.1768 3.4697 15 6 5.3876 -6.9200 1.6690 16 7 6.2208 -7.9332 1.5614 17 14 4.0464 -6.6740 0.3922 18 1 4.5591 -5.8143 -0.7048 19 1 3.6409 -7.9916 -0.1598 20 1 2.8733 -6.0206 1.0262 21 6 5.7942 -2.9703 3.6207 22 6 5.3418 -2.2110 2.3712 23 6 3.9864 0.4257 -1.2502 24 6 5.5117 0.3054 -1.2512 25 6 6.1334 1.7034 -1.2515 26 6 5.6824 2.4624 -0.0019 27 6 4.1577 2.5824 0.0000 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 2.9605 -1.2497 0.8045 34 1 4.0800 -0.8565 3.4728 35 1 2.8629 -3.3223 2.1481 36 1 1.9905 -2.1574 3.1729 37 1 3.4998 -2.6913 5.0660 38 1 2.6726 -4.1533 4.4766 39 1 5.0841 -4.5874 4.8546 40 1 3.9417 -4.8527 2.1805 41 1 6.1387 -8.5519 0.8189 42 1 6.7591 -3.4401 3.4304 43 1 5.8864 -2.2750 4.4551 44 1 5.2493 -2.9060 1.5366 45 1 6.0771 -1.4446 2.1259 46 1 3.5430 -0.5702 -1.2502 47 1 3.6644 0.9667 -2.1400 48 1 5.8329 -0.2357 -2.1411 49 1 5.8341 -0.2355 -0.3614 50 1 5.8111 2.2442 -2.1413 51 1 7.2200 1.6177 -1.2517 52 1 6.1257 3.4582 -0.0019 53 1 6.0048 1.9215 0.8879 54 1 3.8358 3.1239 -0.8895 55 1 3.8364 3.1227 0.8905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713287980.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:03 Heat of formation + Delta-G solvation = -118.316557 kcal Electronic energy + Delta-G solvation = -32610.395639 eV Core-core repulsion = 28645.447362 eV Total energy + Delta-G solvation = -3964.948277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.94582 -40.06277 -38.65593 -37.90508 -36.12933 -34.58428 -33.29698 -32.41623 -31.69817 -31.56804 -29.42983 -27.97955 -26.06464 -25.38816 -24.36745 -23.59914 -23.54522 -22.46960 -21.59311 -20.66505 -19.86736 -19.63546 -17.71137 -17.42344 -17.15842 -16.81841 -16.56269 -16.52101 -16.10111 -15.79293 -15.50613 -15.32551 -15.15897 -14.96500 -14.86374 -14.47709 -14.38402 -14.04082 -13.80409 -13.46107 -13.36602 -13.12092 -13.07838 -13.00004 -12.94229 -12.92838 -12.73382 -12.55401 -12.30268 -12.16032 -12.08266 -11.99277 -11.84649 -11.70602 -11.62715 -11.32516 -11.17235 -11.09881 -11.03374 -10.89149 -10.61340 -10.32406 -9.85499 -9.25391 -7.99380 -5.30521 1.34998 1.39393 1.46368 1.73228 2.28666 2.49633 2.75023 3.32060 3.61287 3.62663 3.66658 3.80970 3.83107 3.90575 4.01525 4.11928 4.18852 4.25437 4.34034 4.35481 4.39104 4.46372 4.51959 4.56698 4.59577 4.61298 4.62796 4.63041 4.66009 4.66202 4.73291 4.79906 4.89652 4.94615 4.97426 5.03079 5.10595 5.11617 5.21862 5.22882 5.25062 5.26656 5.29671 5.36434 5.37539 5.45036 5.55448 5.59365 5.76270 5.82613 6.18851 6.25408 6.73621 7.12476 7.41429 7.89936 8.09658 9.22890 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.003725 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.323377 B = 7514.161678 C = 7634.113114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.409 6.409 3 C 0.076 3.924 4 C -0.071 4.071 5 C 0.524 3.476 6 O -0.576 6.576 7 N -0.708 5.708 8 C 0.156 3.844 9 C -0.114 4.114 10 C -0.113 4.113 11 C 0.170 3.830 12 N -0.743 5.743 13 C -0.222 4.222 14 H 0.054 0.946 15 C -0.066 4.066 16 N -0.988 5.988 17 Si 0.948 3.052 18 H -0.282 1.282 19 H -0.297 1.297 20 H -0.247 1.247 21 C -0.124 4.124 22 C -0.107 4.107 23 C -0.097 4.097 24 C -0.128 4.128 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.086 4.086 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.410 0.590 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.365 0.635 41 H 0.255 0.745 42 H 0.034 0.966 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.040 0.960 46 H 0.066 0.934 47 H 0.097 0.903 48 H 0.070 0.930 49 H 0.030 0.970 50 H 0.082 0.918 51 H 0.054 0.946 52 H 0.070 0.930 53 H 0.058 0.942 54 H 0.096 0.904 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 25.564 -6.027 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.328 6.328 3 C -0.001 4.001 4 C -0.074 4.074 5 C 0.312 3.688 6 O -0.456 6.456 7 N -0.360 5.360 8 C 0.051 3.949 9 C -0.152 4.152 10 C -0.151 4.151 11 C 0.062 3.938 12 N -0.388 5.388 13 C -0.353 4.353 14 H 0.072 0.928 15 C -0.257 4.257 16 N -0.639 5.639 17 Si 0.775 3.225 18 H -0.209 1.209 19 H -0.224 1.224 20 H -0.172 1.172 21 C -0.165 4.165 22 C -0.146 4.146 23 C -0.135 4.135 24 C -0.165 4.165 25 C -0.151 4.151 26 C -0.170 4.170 27 C -0.124 4.124 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.249 0.751 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.199 0.801 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.088 0.912 49 H 0.049 0.951 50 H 0.100 0.900 51 H 0.073 0.927 52 H 0.088 0.912 53 H 0.077 0.923 54 H 0.115 0.885 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.175 25.624 -5.389 29.312 hybrid contribution -0.292 -0.782 -0.942 1.259 sum -13.467 24.842 -6.331 28.958 Atomic orbital electron populations 1.22878 0.79151 1.03681 1.00895 1.87708 1.21546 1.27975 1.95573 1.22539 0.90069 0.85250 1.02259 1.20988 0.95573 0.97423 0.93448 1.20816 0.79195 0.81591 0.87235 1.90598 1.37622 1.68911 1.48484 1.46201 1.49981 1.14387 1.25383 1.20822 0.93246 0.92884 0.87947 1.21672 0.98494 0.96509 0.98556 1.21706 0.96059 0.99477 0.97878 1.20450 0.94628 0.89122 0.89606 1.42791 1.36854 1.29785 1.29341 1.19057 1.07783 1.01643 1.06799 0.92814 1.25438 1.01597 0.97473 1.01198 1.69887 1.41668 1.18421 1.33928 0.85511 0.80517 0.76791 0.79665 1.20850 1.22398 1.17167 1.21974 0.99155 0.97868 0.97469 1.21618 0.96787 0.97703 0.98499 1.21521 0.95041 1.00631 0.96306 1.21599 0.96079 0.97856 1.01014 1.21515 0.99750 0.95149 0.98685 1.21712 0.95817 1.00752 0.98735 1.21291 0.95302 0.92711 1.03076 0.92503 0.89030 0.93592 0.92771 0.89478 0.75130 0.90352 0.92787 0.89291 0.89161 0.90892 0.93660 0.80072 0.93574 0.94689 0.90968 0.93610 0.94131 0.91552 0.88416 0.91180 0.95140 0.89961 0.92745 0.91160 0.92323 0.88523 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -6.54 7.53 -148.98 -1.12 -7.66 16 3 C 0.08 1.07 4.79 71.98 0.35 1.42 16 4 C -0.07 -1.33 0.52 -52.93 -0.03 -1.36 16 5 C 0.52 13.93 4.93 87.66 0.43 14.36 16 6 O -0.58 -19.11 13.32 -3.04 -0.04 -19.15 16 7 N -0.71 -18.57 4.61 -442.54 -2.04 -20.61 16 8 C 0.16 4.50 2.45 44.99 0.11 4.61 16 9 C -0.11 -3.02 5.22 30.60 0.16 -2.86 16 10 C -0.11 -3.17 5.61 30.59 0.17 -3.00 16 11 C 0.17 6.37 3.10 44.99 0.14 6.51 16 12 N -0.74 -34.22 4.08 -322.95 -1.32 -35.53 16 13 C -0.22 -12.71 10.41 84.04 0.87 -11.83 16 14 H 0.05 3.41 8.06 -2.91 -0.02 3.38 16 15 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 16 N -0.99 -64.35 13.97 21.65 0.30 -64.05 16 17 Si 0.95 45.72 27.74 68.60 1.90 47.63 16 18 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 20 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 21 C -0.12 -4.52 5.61 30.61 0.17 -4.34 16 22 C -0.11 -3.77 5.34 30.61 0.16 -3.61 16 23 C -0.10 -1.75 4.49 30.59 0.14 -1.62 16 24 C -0.13 -2.79 5.70 30.59 0.17 -2.61 16 25 C -0.11 -2.14 5.92 30.59 0.18 -1.95 16 26 C -0.13 -2.75 5.63 30.58 0.17 -2.58 16 27 C -0.09 -1.46 4.37 30.58 0.13 -1.33 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.41 9.97 5.98 -92.71 -0.55 9.42 16 34 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 35 H 0.05 1.59 6.51 -2.39 -0.02 1.58 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 40 H 0.36 16.07 3.92 -92.71 -0.36 15.71 16 41 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.05 1.82 7.61 -2.39 -0.02 1.80 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.33 7.11 -2.38 -0.02 1.31 16 47 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 48 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.03 0.87 7.22 -2.38 -0.02 0.85 16 50 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 53 H 0.06 1.67 5.51 -2.38 -0.01 1.66 16 54 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 55 H 0.06 1.15 8.10 -2.38 -0.02 1.13 16 Total: -1.00 -72.90 404.98 2.62 -70.28 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -0.12 Total: 41.21 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.05 Total: -12.11 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -3.06 Total: -120.20 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -1.16 Total: -26.81 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.63 kcal Total: -72.90 2.62 -70.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713287980.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.035 kcal (2) G-P(sol) polarization free energy of solvation -72.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds