Wall clock time and date at job start Tue Mar 31 2020 22:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42905 * 113.99664 * 2 1 4 4 C 1.52998 * 109.47005 * 184.75955 * 3 2 1 5 5 C 1.52992 * 109.47118 * 182.17894 * 4 3 2 6 6 C 1.50701 * 112.90898 * 308.60899 * 5 4 3 7 7 O 1.21278 * 119.99955 * 107.57376 * 6 5 4 8 8 N 1.34773 * 119.99744 * 287.57066 * 6 5 4 9 9 C 1.46926 * 120.63294 * 5.18986 * 8 6 5 10 10 C 1.53200 * 108.77435 * 233.58213 * 9 8 6 11 11 C 1.53046 * 109.30765 * 305.36041 * 10 9 8 12 12 C 1.53041 * 109.53580 * 61.36731 * 11 10 9 13 13 H 1.09001 * 109.49951 * 58.59018 * 12 11 10 14 14 C 1.53003 * 109.49380 * 178.64859 * 12 11 10 15 15 N 1.46499 * 109.47139 * 294.99660 * 14 12 11 16 16 C 1.46504 * 119.99875 * 90.00164 * 15 14 12 17 17 C 1.36935 * 120.00217 * 270.00119 * 15 14 12 18 18 H 1.08005 * 120.00186 * 17.46663 * 17 15 14 19 19 C 1.38815 * 120.00218 * 197.46004 * 17 15 14 20 20 N 1.31620 * 119.99890 * 15.00359 * 19 17 15 21 21 Si 1.86797 * 120.00364 * 194.99825 * 19 17 15 22 22 H 1.48508 * 109.47081 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47057 * 120.00156 * 21 19 17 24 24 H 1.48498 * 109.47175 * 240.00667 * 21 19 17 25 25 C 1.46931 * 120.63172 * 184.89847 * 8 6 5 26 26 C 1.53783 * 113.61324 * 177.35726 * 5 4 3 27 27 C 1.53785 * 87.08199 * 270.88146 * 26 5 4 28 28 C 1.53777 * 87.08077 * 334.56705 * 27 26 5 29 29 H 1.08998 * 109.46755 * 184.77561 * 1 2 3 30 30 H 1.08999 * 109.47377 * 304.77458 * 1 2 3 31 31 H 1.09001 * 109.46841 * 64.77766 * 1 2 3 32 32 H 1.08996 * 109.47376 * 64.75639 * 3 2 1 33 33 H 1.09006 * 109.46800 * 304.75330 * 3 2 1 34 34 H 1.09000 * 109.47298 * 62.17467 * 4 3 2 35 35 H 1.09000 * 109.46930 * 302.18190 * 4 3 2 36 36 H 1.09000 * 109.58742 * 353.36194 * 9 8 6 37 37 H 1.08994 * 109.59306 * 113.65171 * 9 8 6 38 38 H 1.08997 * 109.49877 * 65.30995 * 10 9 8 39 39 H 1.08998 * 109.49857 * 185.41060 * 10 9 8 40 40 H 1.09006 * 109.45404 * 181.38225 * 11 10 9 41 41 H 1.08988 * 109.46156 * 301.35712 * 11 10 9 42 42 H 1.09000 * 109.47282 * 54.99658 * 14 12 11 43 43 H 1.09001 * 109.46916 * 174.99976 * 14 12 11 44 44 H 1.09002 * 109.47241 * 95.41193 * 16 15 14 45 45 H 1.09001 * 109.47127 * 215.41133 * 16 15 14 46 46 H 1.09003 * 109.46954 * 335.40981 * 16 15 14 47 47 H 0.96998 * 120.00641 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.58773 * 246.20613 * 25 8 6 49 49 H 1.09003 * 109.58500 * 6.63538 * 25 8 6 50 50 H 1.09003 * 113.61664 * 25.43268 * 26 5 4 51 51 H 1.09006 * 113.61711 * 156.33656 * 26 5 4 52 52 H 1.08999 * 113.60893 * 89.11988 * 27 26 5 53 53 H 1.08996 * 113.61741 * 220.01575 * 27 26 5 54 54 H 1.08992 * 113.61759 * 270.88127 * 28 27 26 55 55 H 1.09008 * 113.61361 * 139.97489 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1868 -0.1197 5 6 4.1572 2.5816 -0.0651 6 6 3.5307 3.5446 -1.0404 7 8 2.8091 4.4321 -0.6375 8 7 3.7724 3.4194 -2.3603 9 6 4.5508 2.2844 -2.8746 10 6 5.7036 2.8232 -3.7276 11 6 5.1422 3.7438 -4.8137 12 6 4.4290 4.9300 -4.1606 13 1 5.1300 5.4709 -3.5249 14 6 3.8973 5.8672 -5.2470 15 7 5.0222 6.4492 -5.9832 16 6 5.5500 5.7715 -7.1701 17 6 5.5803 7.6266 -5.5622 18 1 5.3990 7.9816 -4.5584 19 6 6.3793 8.3639 -6.4254 20 7 6.3679 8.1045 -7.7157 21 14 7.4704 9.7241 -5.7558 22 1 7.3018 9.8142 -4.2831 23 1 8.8892 9.4221 -6.0735 24 1 7.0881 11.0170 -6.3782 25 6 3.2571 4.4121 -3.3132 26 6 5.6942 2.5690 -0.1130 27 6 5.6629 2.4648 1.4210 28 6 4.2847 3.1443 1.3605 29 1 -0.3633 -1.0241 0.0856 30 1 -0.3634 0.5861 0.8441 31 1 -0.3633 0.4379 -0.9297 32 1 1.7576 1.8157 0.9295 33 1 1.6228 1.8757 -0.8444 34 1 3.7848 0.7113 -1.0671 35 1 3.9141 0.5839 0.7035 36 1 4.9517 1.7084 -2.0405 37 1 3.9095 1.6474 -3.4837 38 1 6.3925 3.3839 -3.0959 39 1 6.2315 1.9910 -4.1933 40 1 5.9581 4.1092 -5.4374 41 1 4.4345 3.1892 -5.4297 42 1 3.2651 5.3050 -5.9343 43 1 3.3138 6.6639 -4.7857 44 1 5.0918 6.1948 -8.0640 45 1 6.6304 5.9082 -7.2161 46 1 5.3204 4.7075 -7.1131 47 1 6.9258 8.6198 -8.3190 48 1 2.5130 3.9464 -3.9594 49 1 2.8040 5.2405 -2.7686 50 1 6.1086 1.6874 -0.6022 51 1 6.1274 3.5001 -0.4786 52 1 5.6284 1.4392 1.7883 53 1 6.4252 3.0670 1.9152 54 1 4.3324 4.2325 1.3976 55 1 3.5610 2.7271 2.0608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713900148.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:27 Heat of formation + Delta-G solvation = -60.700866 kcal Electronic energy + Delta-G solvation = -31747.818343 eV Core-core repulsion = 27785.368470 eV Total energy + Delta-G solvation = -3962.449873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.15544 -39.77616 -38.74611 -38.35328 -37.21042 -34.46010 -32.96816 -32.61025 -31.92954 -28.36831 -28.13642 -27.35395 -26.86946 -26.60788 -25.48786 -23.84468 -23.68988 -22.54690 -21.45404 -20.61101 -19.30326 -18.68061 -17.92115 -17.48376 -17.39159 -17.06366 -16.79019 -16.20594 -16.08236 -15.87476 -15.61248 -15.58602 -15.21359 -14.94526 -14.72868 -14.54230 -14.30107 -14.09310 -13.75349 -13.49171 -13.42462 -13.32112 -13.13780 -12.94722 -12.81114 -12.65823 -12.50124 -12.38732 -12.28483 -12.17111 -12.13107 -12.04801 -11.95154 -11.82850 -11.66475 -11.57873 -11.41104 -11.20938 -11.13235 -10.68381 -10.64927 -10.47451 -9.62539 -8.79399 -7.83509 -5.26468 1.41900 1.43565 1.53752 1.58581 2.00398 2.49318 2.64897 3.28214 3.31234 3.48173 3.64793 3.66608 3.82759 3.85834 3.91867 3.98089 4.06534 4.11328 4.20280 4.28032 4.39293 4.40061 4.44440 4.48365 4.52419 4.57698 4.61878 4.65641 4.75785 4.78184 4.80808 4.81704 4.84488 4.87456 4.90277 4.95520 4.98326 5.00001 5.06825 5.13644 5.20973 5.22043 5.25751 5.38504 5.46384 5.51285 5.57378 5.58794 5.61001 5.75860 6.11648 6.30409 6.45367 7.15082 7.15904 7.89465 8.29575 9.19484 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.002825 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.618234 B = 9908.835963 C =10538.762678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.064 3.936 4 C -0.085 4.085 5 C -0.100 4.100 6 C 0.521 3.479 7 O -0.590 6.590 8 N -0.603 5.603 9 C 0.100 3.900 10 C -0.127 4.127 11 C -0.107 4.107 12 C -0.102 4.102 13 H 0.038 0.962 14 C 0.156 3.844 15 N -0.615 5.615 16 C 0.181 3.819 17 C -0.254 4.254 18 H 0.062 0.938 19 C -0.056 4.056 20 N -0.939 5.939 21 Si 0.963 3.037 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.292 1.292 25 C 0.124 3.876 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.120 4.120 29 H 0.105 0.895 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.032 0.968 44 H -0.004 1.004 45 H 0.017 0.983 46 H 0.040 0.960 47 H 0.247 0.753 48 H 0.080 0.920 49 H 0.062 0.938 50 H 0.105 0.895 51 H 0.069 0.931 52 H 0.109 0.891 53 H 0.076 0.924 54 H 0.063 0.937 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.817 -22.167 16.726 28.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.013 4.013 4 C -0.122 4.122 5 C -0.103 4.103 6 C 0.311 3.689 7 O -0.471 6.471 8 N -0.334 5.334 9 C -0.021 4.021 10 C -0.165 4.165 11 C -0.144 4.144 12 C -0.124 4.124 13 H 0.057 0.943 14 C 0.030 3.970 15 N -0.338 5.338 16 C 0.036 3.964 17 C -0.385 4.385 18 H 0.080 0.920 19 C -0.250 4.250 20 N -0.587 5.587 21 Si 0.792 3.208 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.219 1.219 25 C 0.000 4.000 26 C -0.159 4.159 27 C -0.163 4.163 28 C -0.158 4.158 29 H 0.124 0.876 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.014 0.986 45 H 0.035 0.965 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.098 0.902 49 H 0.081 0.919 50 H 0.123 0.877 51 H 0.088 0.912 52 H 0.127 0.873 53 H 0.095 0.905 54 H 0.082 0.918 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.007 -21.802 16.790 27.969 hybrid contribution 0.165 2.052 -0.301 2.080 sum -4.841 -19.750 16.489 26.180 Atomic orbital electron populations 1.22920 0.79776 1.04011 1.00387 1.87794 1.21152 1.27811 1.95521 1.22450 0.94725 0.84331 0.99758 1.21343 0.92202 0.92914 1.05743 1.22135 0.97783 0.94939 0.95484 1.21080 0.79837 0.85123 0.82904 1.90654 1.39946 1.37672 1.78808 1.48212 1.53328 1.26106 1.05789 1.22229 0.92968 0.87293 0.99628 1.21898 0.97501 0.99911 0.97203 1.21520 0.99953 0.95118 0.97826 1.21983 0.96638 0.96955 0.96835 0.94316 1.20808 0.88811 0.94594 0.92836 1.44095 1.35945 1.23229 1.30559 1.20608 0.96481 0.91763 0.87543 1.19475 1.24784 0.98553 0.95651 0.91973 1.25601 1.03116 1.00944 0.95334 1.70269 1.42588 1.43699 1.02095 0.85262 0.78749 0.78967 0.77849 1.19755 1.21495 1.21920 1.21556 0.95768 0.91799 0.90827 1.23057 0.90978 1.03421 0.98428 1.22851 0.95932 1.02354 0.95164 1.22861 0.99163 1.00095 0.93701 0.87648 0.93592 0.94143 0.93375 0.95280 0.88845 0.87484 0.86932 0.89766 0.92796 0.88317 0.92876 0.91218 0.92714 0.94971 0.98603 0.96454 0.94167 0.94327 0.90209 0.91931 0.87669 0.91193 0.87256 0.90532 0.91778 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.65 10.70 -148.98 -1.59 -9.25 16 3 C 0.06 1.23 5.53 71.98 0.40 1.63 16 4 C -0.08 -1.25 4.66 30.59 0.14 -1.11 16 5 C -0.10 -1.86 0.32 -52.40 -0.02 -1.88 16 6 C 0.52 14.30 5.28 87.66 0.46 14.77 16 7 O -0.59 -21.49 15.76 -3.02 -0.05 -21.53 16 8 N -0.60 -15.35 2.97 -818.06 -2.43 -17.78 16 9 C 0.10 1.80 5.27 86.37 0.45 2.25 16 10 C -0.13 -2.66 6.08 30.68 0.19 -2.48 16 11 C -0.11 -3.05 4.21 30.62 0.13 -2.92 16 12 C -0.10 -3.49 2.56 -10.57 -0.03 -3.52 16 13 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 14 C 0.16 6.37 5.14 86.38 0.44 6.81 16 15 N -0.62 -31.04 2.76 -726.91 -2.00 -33.04 16 16 C 0.18 8.87 7.86 127.77 1.00 9.87 16 17 C -0.25 -14.37 9.70 84.03 0.82 -13.56 16 18 H 0.06 3.52 7.87 -2.91 -0.02 3.50 16 19 C -0.06 -3.19 5.08 84.86 0.43 -2.76 16 20 N -0.94 -56.42 10.50 21.65 0.23 -56.20 16 21 Si 0.96 46.51 29.58 68.60 2.03 48.54 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 C 0.12 3.71 5.73 86.51 0.50 4.21 16 26 C -0.12 -1.80 5.73 31.12 0.18 -1.63 16 27 C -0.13 -1.57 7.73 31.12 0.24 -1.33 16 28 C -0.12 -2.23 6.80 31.12 0.21 -2.01 16 29 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.96 7.79 -2.39 -0.02 0.94 16 33 H 0.03 0.67 7.28 -2.38 -0.02 0.65 16 34 H 0.09 1.17 6.15 -2.39 -0.01 1.16 16 35 H 0.11 1.18 7.32 -2.39 -0.02 1.16 16 36 H 0.11 1.48 3.04 -2.39 -0.01 1.48 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.83 5.88 -2.38 -0.01 1.82 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 2.02 8.07 -2.39 -0.02 2.00 16 43 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 44 H 0.00 -0.24 7.46 -2.39 -0.02 -0.25 16 45 H 0.02 0.91 7.03 -2.39 -0.02 0.89 16 46 H 0.04 1.62 6.21 -2.39 -0.01 1.61 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.06 2.20 7.04 -2.39 -0.02 2.18 16 50 H 0.10 1.02 7.07 -2.39 -0.02 1.01 16 51 H 0.07 1.36 8.09 -2.38 -0.02 1.34 16 52 H 0.11 0.87 7.63 -2.39 -0.02 0.85 16 53 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 54 H 0.06 1.53 7.85 -2.39 -0.02 1.51 16 55 H 0.08 1.33 7.78 -2.38 -0.02 1.31 16 Total: -1.00 -72.80 409.60 3.83 -68.97 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.85 Total: 12.32 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.80 Total: 7.98 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -4.20 Total: -107.02 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.64 Total: -30.78 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -72.80 3.83 -68.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713900148.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.268 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds