Wall clock time and date at job start Tue Mar 31 2020 22:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99827 * 2 1 4 4 C 1.53005 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47046 * 185.10337 * 4 3 2 6 6 C 1.50693 * 112.84988 * 302.47315 * 5 4 3 7 7 O 1.21280 * 119.99778 * 114.15994 * 6 5 4 8 8 N 1.34780 * 120.00229 * 294.16045 * 6 5 4 9 9 C 1.46922 * 120.62958 * 354.56265 * 8 6 5 10 10 C 1.53189 * 108.77638 * 126.41335 * 9 8 6 11 11 C 1.53035 * 109.31173 * 54.63387 * 10 9 8 12 12 C 1.53034 * 109.53997 * 298.63428 * 11 10 9 13 13 H 1.09010 * 109.49891 * 301.38241 * 12 11 10 14 14 C 1.52999 * 109.50151 * 181.32002 * 12 11 10 15 15 N 1.46499 * 109.47268 * 64.99707 * 14 12 11 16 16 C 1.46504 * 120.00166 * 270.00631 * 15 14 12 17 17 C 1.36939 * 120.00252 * 90.00097 * 15 14 12 18 18 H 1.08002 * 119.99485 * 24.46141 * 17 15 14 19 19 C 1.38808 * 120.00379 * 204.46327 * 17 15 14 20 20 N 1.31615 * 119.99834 * 7.61944 * 19 17 15 21 21 Si 1.86800 * 120.00190 * 187.62028 * 19 17 15 22 22 H 1.48497 * 109.47123 * 89.99603 * 21 19 17 23 23 H 1.48499 * 109.47392 * 210.00011 * 21 19 17 24 24 H 1.48507 * 109.47182 * 330.00120 * 21 19 17 25 25 C 1.46923 * 120.62762 * 174.58336 * 8 6 5 26 26 C 1.53782 * 113.61416 * 73.67348 * 5 4 3 27 27 C 1.53956 * 87.01933 * 89.22772 * 26 5 4 28 28 C 1.53780 * 87.11308 * 25.36058 * 27 26 5 29 29 H 1.09005 * 109.47007 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47012 * 299.99681 * 1 2 3 31 31 H 1.09001 * 109.47027 * 59.99959 * 1 2 3 32 32 H 1.09003 * 109.47256 * 60.00414 * 3 2 1 33 33 H 1.09003 * 109.47067 * 299.99547 * 3 2 1 34 34 H 1.08997 * 109.47324 * 65.09877 * 4 3 2 35 35 H 1.09000 * 109.46747 * 305.10137 * 4 3 2 36 36 H 1.09003 * 109.58582 * 6.62416 * 9 8 6 37 37 H 1.09004 * 109.58413 * 246.19801 * 9 8 6 38 38 H 1.08994 * 109.49831 * 294.67765 * 10 9 8 39 39 H 1.08998 * 109.49647 * 174.58362 * 10 9 8 40 40 H 1.09005 * 109.46348 * 58.65692 * 11 10 9 41 41 H 1.09008 * 109.45673 * 178.61320 * 11 10 9 42 42 H 1.09002 * 109.47425 * 184.99988 * 14 12 11 43 43 H 1.09005 * 109.47216 * 304.99928 * 14 12 11 44 44 H 1.08989 * 109.47260 * 94.98789 * 16 15 14 45 45 H 1.09006 * 109.46827 * 214.99194 * 16 15 14 46 46 H 1.09007 * 109.46810 * 334.98417 * 16 15 14 47 47 H 0.97002 * 119.99947 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.58838 * 113.80164 * 25 8 6 49 49 H 1.08996 * 109.59421 * 353.37282 * 25 8 6 50 50 H 1.09002 * 113.61159 * 203.74667 * 26 5 4 51 51 H 1.09002 * 113.61371 * 334.65294 * 26 5 4 52 52 H 1.09007 * 113.53651 * 270.80863 * 27 26 5 53 53 H 1.09005 * 113.74160 * 139.94298 * 27 26 5 54 54 H 1.09003 * 113.61550 * 220.08641 * 28 27 26 55 55 H 1.09001 * 113.61519 * 89.18557 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1574 2.5767 0.1277 6 6 3.7218 3.5154 -0.9677 7 8 3.0464 4.4868 -0.7008 8 7 4.0827 3.2756 -2.2439 9 6 4.9973 2.1725 -2.5685 10 6 4.3439 1.2877 -3.6347 11 6 3.9484 2.1502 -4.8353 12 6 2.9319 3.2059 -4.3945 13 1 2.0559 2.7134 -3.9721 14 6 2.5124 4.0466 -5.6021 15 7 1.8000 3.2002 -6.5625 16 6 2.5421 2.5024 -7.6154 17 6 0.4404 3.0613 -6.4761 18 1 -0.1517 3.8294 -6.0009 19 6 -0.1767 1.9333 -6.9992 20 7 0.5516 0.9306 -7.4424 21 14 -2.0408 1.8384 -7.0742 22 1 -2.5129 2.3925 -8.3685 23 1 -2.4695 0.4216 -6.9563 24 1 -2.6218 2.6260 -5.9572 25 6 3.5693 4.1125 -3.3369 26 6 4.0369 3.1775 1.5381 27 6 5.3784 2.4927 1.8571 28 6 5.6788 2.5534 0.3502 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8632 0.7248 -0.9329 35 1 3.8513 0.5667 0.8399 36 1 5.1909 1.5827 -1.6725 37 1 5.9344 2.5759 -2.9525 38 1 3.4550 0.8133 -3.2189 39 1 5.0501 0.5213 -3.9542 40 1 4.8341 2.6438 -5.2355 41 1 3.5055 1.5189 -5.6058 42 1 1.8575 4.8535 -5.2732 43 1 3.3984 4.4683 -6.0767 44 1 2.7715 1.4887 -7.2874 45 1 1.9371 2.4632 -8.5213 46 1 3.4699 3.0366 -7.8210 47 1 0.1204 0.1425 -7.8083 48 1 4.3898 4.6741 -3.7836 49 1 2.8206 4.8027 -2.9481 50 1 4.0877 4.2662 1.5546 51 1 3.1973 2.7831 2.1105 52 1 5.2689 1.4780 2.2400 53 1 6.0499 3.1029 2.4612 54 1 6.1629 1.6559 -0.0350 55 1 6.1793 3.4712 0.0414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713900149.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:31 Heat of formation + Delta-G solvation = -61.736154 kcal Electronic energy + Delta-G solvation = -32352.070135 eV Core-core repulsion = 28389.575369 eV Total energy + Delta-G solvation = -3962.494766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.14690 -39.77193 -38.82579 -38.30477 -37.19562 -34.41506 -32.96180 -32.67897 -31.93850 -28.39210 -28.10850 -27.38566 -26.87348 -26.59676 -25.49579 -23.85921 -23.61200 -22.67250 -21.49871 -20.40527 -19.32910 -18.70899 -17.95391 -17.55289 -17.47547 -17.00254 -16.73427 -16.33724 -16.04508 -15.97796 -15.67409 -15.60180 -15.18610 -15.01639 -14.73184 -14.50189 -14.20253 -14.04389 -13.79932 -13.47966 -13.39590 -13.28598 -13.16346 -12.94211 -12.78528 -12.68700 -12.53957 -12.37291 -12.27342 -12.19113 -12.14050 -12.06983 -12.00728 -11.89262 -11.61067 -11.52968 -11.40610 -11.18427 -11.13656 -10.75501 -10.65342 -10.47541 -9.61142 -8.71811 -7.83260 -5.31704 1.41358 1.41740 1.50251 1.56980 2.04011 2.48032 2.60302 3.30109 3.32058 3.51614 3.63952 3.71404 3.80282 3.86984 3.92366 3.97777 4.04301 4.09231 4.17866 4.28521 4.33821 4.38403 4.41573 4.43193 4.47818 4.57953 4.61521 4.66640 4.73094 4.74753 4.79683 4.82884 4.83747 4.87844 4.90490 4.93714 4.96520 4.98175 5.08597 5.15020 5.22210 5.23456 5.29953 5.36975 5.47326 5.51023 5.57432 5.61271 5.64863 5.85113 6.04331 6.34296 6.46227 7.15723 7.17329 7.89275 8.31735 9.18922 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.003765 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.570625 B = 7435.681121 C = 8640.277995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.063 3.937 4 C -0.087 4.087 5 C -0.106 4.106 6 C 0.521 3.479 7 O -0.590 6.590 8 N -0.604 5.604 9 C 0.104 3.896 10 C -0.129 4.129 11 C -0.104 4.104 12 C -0.103 4.103 13 H 0.023 0.977 14 C 0.156 3.844 15 N -0.613 5.613 16 C 0.182 3.818 17 C -0.262 4.262 18 H 0.060 0.940 19 C -0.045 4.045 20 N -0.932 5.932 21 Si 0.960 3.040 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.276 1.276 25 C 0.124 3.876 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.115 4.115 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.013 0.987 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.014 0.986 45 H 0.010 0.990 46 H 0.028 0.972 47 H 0.247 0.753 48 H 0.086 0.914 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.071 0.929 52 H 0.101 0.899 53 H 0.085 0.915 54 H 0.103 0.897 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.441 -0.765 17.982 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.013 4.013 4 C -0.124 4.124 5 C -0.109 4.109 6 C 0.310 3.690 7 O -0.471 6.471 8 N -0.335 5.335 9 C -0.017 4.017 10 C -0.167 4.167 11 C -0.142 4.142 12 C -0.125 4.125 13 H 0.042 0.958 14 C 0.030 3.970 15 N -0.336 5.336 16 C 0.037 3.963 17 C -0.393 4.393 18 H 0.077 0.923 19 C -0.241 4.241 20 N -0.579 5.579 21 Si 0.788 3.212 22 H -0.210 1.210 23 H -0.219 1.219 24 H -0.201 1.201 25 C 0.001 3.999 26 C -0.159 4.159 27 C -0.161 4.161 28 C -0.153 4.153 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.032 0.968 45 H 0.029 0.971 46 H 0.046 0.954 47 H 0.056 0.944 48 H 0.104 0.896 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.120 0.880 53 H 0.103 0.897 54 H 0.121 0.879 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.158 -0.558 18.011 22.916 hybrid contribution -2.209 0.164 -0.727 2.331 sum 11.949 -0.394 17.284 21.016 Atomic orbital electron populations 1.22898 0.79962 1.04001 1.00140 1.87781 1.20993 1.28046 1.95466 1.22474 0.95354 0.84321 0.99176 1.21369 0.91659 0.94071 1.05296 1.22155 1.00334 0.94359 0.94029 1.21085 0.78456 0.85612 0.83816 1.90640 1.41268 1.31974 1.83181 1.48217 1.47073 1.32477 1.05741 1.22202 0.92131 0.87472 0.99944 1.21880 1.00562 0.98382 0.95858 1.21464 0.97893 0.97106 0.97715 1.21922 0.97009 0.97365 0.96159 0.95805 1.20933 0.95190 0.91951 0.88975 1.44065 1.03327 1.55419 1.30816 1.20602 0.91768 0.94086 0.89825 1.19438 0.83982 1.01079 1.34798 0.92261 1.25698 1.01503 0.95158 1.01701 1.70186 1.34456 1.06487 1.46732 0.85383 0.81367 0.76488 0.77925 1.21024 1.21863 1.20148 1.21519 0.98734 0.92843 0.86799 1.22917 0.99802 1.00393 0.92742 1.22857 0.95496 1.02081 0.95676 1.23065 0.90529 1.04093 0.97583 0.87661 0.92556 0.95560 0.92623 0.96823 0.89882 0.87150 0.87075 0.88817 0.94362 0.88700 0.90840 0.93384 0.94687 0.91725 0.96811 0.97112 0.95380 0.94371 0.89582 0.92006 0.90778 0.90988 0.88026 0.89662 0.87864 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -11.40 10.70 -148.98 -1.59 -12.99 16 3 C 0.06 1.72 5.55 71.98 0.40 2.12 16 4 C -0.09 -1.77 4.60 30.60 0.14 -1.63 16 5 C -0.11 -2.14 0.29 -52.40 -0.02 -2.15 16 6 C 0.52 15.22 5.65 87.65 0.50 15.71 16 7 O -0.59 -22.29 15.59 -3.03 -0.05 -22.33 16 8 N -0.60 -16.66 2.97 -818.92 -2.43 -19.10 16 9 C 0.10 2.13 5.25 86.36 0.45 2.58 16 10 C -0.13 -3.39 5.94 30.67 0.18 -3.21 16 11 C -0.10 -3.45 4.78 30.62 0.15 -3.31 16 12 C -0.10 -3.84 2.55 -10.72 -0.03 -3.87 16 13 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 14 C 0.16 6.40 5.18 86.38 0.45 6.85 16 15 N -0.61 -31.05 2.75 -726.92 -2.00 -33.04 16 16 C 0.18 8.91 7.85 127.77 1.00 9.91 16 17 C -0.26 -14.90 9.66 84.03 0.81 -14.08 16 18 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 19 C -0.05 -2.59 5.20 84.86 0.44 -2.15 16 20 N -0.93 -55.29 10.52 21.65 0.23 -55.06 16 21 Si 0.96 46.51 29.56 68.60 2.03 48.54 16 22 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 C 0.12 3.93 5.70 86.36 0.49 4.42 16 26 C -0.12 -2.24 6.74 31.18 0.21 -2.03 16 27 C -0.12 -1.40 7.74 31.18 0.24 -1.16 16 28 C -0.12 -1.49 5.82 31.12 0.18 -1.31 16 29 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 1.42 7.19 -2.39 -0.02 1.41 16 33 H 0.01 0.46 7.53 -2.39 -0.02 0.45 16 34 H 0.08 1.73 5.56 -2.39 -0.01 1.72 16 35 H 0.11 1.71 7.31 -2.39 -0.02 1.69 16 36 H 0.11 1.76 3.09 -2.39 -0.01 1.75 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.48 16 38 H 0.04 1.22 7.90 -2.39 -0.02 1.20 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.05 2.00 5.45 -2.38 -0.01 1.99 16 42 H 0.03 1.47 8.04 -2.39 -0.02 1.45 16 43 H 0.06 2.29 7.86 -2.38 -0.02 2.27 16 44 H 0.01 0.73 5.83 -2.39 -0.01 0.71 16 45 H 0.01 0.55 7.28 -2.38 -0.02 0.54 16 46 H 0.03 1.15 7.84 -2.38 -0.02 1.14 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.06 2.26 7.04 -2.39 -0.02 2.24 16 50 H 0.07 1.65 7.72 -2.39 -0.02 1.63 16 51 H 0.07 1.32 7.28 -2.39 -0.02 1.30 16 52 H 0.10 0.85 7.60 -2.38 -0.02 0.83 16 53 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 54 H 0.10 0.87 7.17 -2.39 -0.02 0.86 16 55 H 0.09 1.18 8.09 -2.39 -0.02 1.17 16 Total: -1.00 -72.97 408.12 3.89 -69.08 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.85 Total: 16.31 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.85 Total: 8.60 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.20 Total: -107.20 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.64 Total: -35.33 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -72.97 3.89 -69.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713900149.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.345 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds