Wall clock time and date at job start Tue Mar 31 2020 22:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00168 * 2 1 4 4 C 1.52996 * 109.47458 * 210.00099 * 3 2 1 5 5 C 1.53010 * 109.46864 * 299.99953 * 4 3 2 6 6 C 1.53005 * 109.46763 * 299.99935 * 5 4 3 7 7 C 1.52996 * 109.46636 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.47377 * 175.00066 * 7 6 5 9 9 O 1.21287 * 119.99246 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00359 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00197 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47215 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.58602 * 60.14709 * 12 11 10 14 14 C 1.53188 * 109.58599 * 180.57708 * 12 11 10 15 15 C 1.53037 * 109.31655 * 174.42399 * 14 12 11 16 16 C 1.53042 * 109.53550 * 298.63431 * 15 14 12 17 17 C 1.52766 * 109.38337 * 61.23866 * 16 15 14 18 18 N 1.46920 * 109.00632 * 305.58911 * 17 16 15 19 19 C 1.36938 * 120.63090 * 233.58558 * 18 17 16 20 20 H 1.07998 * 120.00590 * 147.38562 * 19 18 17 21 21 C 1.38815 * 119.99718 * 327.38499 * 19 18 17 22 22 N 1.31620 * 120.00099 * 337.68192 * 21 19 18 23 23 Si 1.86804 * 119.99944 * 157.67940 * 21 19 18 24 24 H 1.48504 * 109.47198 * 270.00115 * 23 21 19 25 25 H 1.48497 * 109.47234 * 30.00184 * 23 21 19 26 26 H 1.48501 * 109.47040 * 149.99991 * 23 21 19 27 27 C 1.53001 * 109.47065 * 60.00345 * 6 5 4 28 28 C 1.52996 * 109.47125 * 299.99371 * 27 6 5 29 29 H 1.09004 * 109.46675 * 59.99990 * 1 2 3 30 30 H 1.08999 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47317 * 299.99869 * 1 2 3 32 32 H 1.09003 * 109.46773 * 330.00019 * 3 2 1 33 33 H 1.08995 * 109.47133 * 180.02562 * 4 3 2 34 34 H 1.08996 * 109.47167 * 59.99739 * 4 3 2 35 35 H 1.08995 * 109.46982 * 180.02562 * 5 4 3 36 36 H 1.08995 * 109.47019 * 60.00208 * 5 4 3 37 37 H 1.08993 * 109.47184 * 299.99582 * 6 5 4 38 38 H 1.09001 * 109.47262 * 55.00343 * 7 6 5 39 39 H 1.09006 * 109.47426 * 295.00214 * 7 6 5 40 40 H 0.97001 * 120.00031 * 0.02562 * 10 8 7 41 41 H 1.09001 * 109.46602 * 60.00244 * 11 10 8 42 42 H 1.09006 * 109.47222 * 300.00644 * 11 10 8 43 43 H 1.09007 * 109.50092 * 294.37398 * 14 12 11 44 44 H 1.08995 * 109.50229 * 54.43947 * 14 12 11 45 45 H 1.09003 * 109.45876 * 58.64877 * 15 14 12 46 46 H 1.08999 * 109.46496 * 178.62582 * 15 14 12 47 47 H 1.09005 * 109.49697 * 181.31482 * 16 15 14 48 48 H 1.08995 * 109.49647 * 301.41119 * 16 15 14 49 49 H 1.09003 * 109.50774 * 185.70319 * 17 16 15 50 50 H 1.09001 * 109.43144 * 65.42604 * 17 16 15 51 51 H 0.97003 * 119.99865 * 354.49198 * 22 21 19 52 52 H 1.09003 * 109.47261 * 59.99701 * 27 6 5 53 53 H 1.09001 * 109.46438 * 179.97438 * 27 6 5 54 54 H 1.09003 * 109.47320 * 300.00293 * 28 27 6 55 55 H 1.08995 * 109.47058 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 -0.7212 5 6 4.2927 0.2892 0.0001 6 6 4.5001 0.7552 1.4426 7 6 5.4343 -0.2184 2.1636 8 6 5.7367 0.3046 3.5443 9 8 5.2522 1.3529 3.9151 10 7 6.5447 -0.3928 4.3672 11 6 6.8391 0.1161 5.7091 12 6 7.7732 -0.8577 6.4302 13 1 8.7031 -0.9547 5.8698 14 6 8.0713 -0.3353 7.8390 15 6 8.8907 -1.3780 8.6028 16 6 8.0830 -2.6719 8.7282 17 6 7.7823 -3.2191 7.3340 18 7 7.1253 -2.1717 6.5404 19 6 5.9288 -2.4138 5.9198 20 1 5.2099 -1.6164 5.8031 21 6 5.6400 -3.6842 5.4407 22 7 6.6170 -4.5248 5.1739 23 14 3.8647 -4.2009 5.1747 24 1 3.3378 -4.8201 6.4173 25 1 3.0484 -3.0089 4.8311 26 1 3.7964 -5.1843 4.0641 27 6 3.1514 0.7974 2.1638 28 6 2.2176 1.7714 1.4426 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.3449 1.9994 -0.5139 33 1 3.8024 2.2590 -0.7208 34 1 3.2111 0.9314 -1.7489 35 1 5.2537 0.2595 -0.5135 36 1 3.8494 -0.7065 0.0000 37 1 4.9434 1.7509 1.4426 38 1 6.3626 -0.3156 1.6006 39 1 4.9531 -1.1934 2.2418 40 1 6.9319 -1.2313 4.0707 41 1 5.9109 0.2140 6.2721 42 1 7.3209 1.0906 5.6305 43 1 8.6378 0.5935 7.7705 44 1 7.1344 -0.1519 8.3649 45 1 9.8163 -1.5787 8.0633 46 1 9.1250 -0.9986 9.5973 47 1 8.6578 -3.4063 9.2925 48 1 7.1459 -2.4670 9.2458 49 1 7.1228 -4.0830 7.4165 50 1 8.7142 -3.5131 6.8510 51 1 7.5396 -4.2314 5.2354 52 1 2.7080 -0.1984 2.1638 53 1 3.2992 1.1289 3.1916 54 1 2.6609 2.7672 1.4426 55 1 1.2569 1.8017 1.9566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714119685.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:40 Heat of formation + Delta-G solvation = -109.429029 kcal Electronic energy + Delta-G solvation = -31668.797129 eV Core-core repulsion = 27704.234244 eV Total energy + Delta-G solvation = -3964.562884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.11676 -40.15040 -39.37935 -37.16977 -35.66992 -35.15143 -33.10006 -32.21841 -31.65381 -31.52894 -28.61361 -27.46250 -27.06842 -25.97862 -23.77494 -23.61284 -22.81425 -22.19015 -21.10057 -20.67055 -20.51710 -19.07748 -17.71136 -17.28012 -17.11804 -16.83535 -16.78747 -16.24863 -15.98327 -15.82566 -15.51270 -15.11362 -15.04748 -14.98352 -14.87017 -14.63829 -14.11834 -13.99359 -13.82048 -13.66098 -13.27401 -13.24546 -13.11223 -12.92948 -12.84978 -12.74426 -12.58425 -12.30951 -12.11063 -12.00453 -11.98316 -11.96900 -11.73309 -11.64905 -11.47731 -11.31641 -11.28018 -11.01150 -10.95954 -10.58987 -10.44537 -10.25083 -9.77356 -8.80834 -8.08692 -5.34434 1.55535 1.58212 1.75876 1.80897 2.47780 2.62113 2.95429 3.27473 3.48372 3.75420 3.79664 3.87721 3.92469 4.02958 4.08598 4.17511 4.21759 4.24402 4.31500 4.41925 4.45937 4.49106 4.50579 4.53942 4.58986 4.61993 4.67546 4.69021 4.72741 4.75149 4.82683 4.85955 4.89385 4.95624 5.01724 5.06941 5.08366 5.14863 5.16794 5.19219 5.27776 5.29776 5.31690 5.34529 5.36618 5.52047 5.59555 5.63696 5.72018 6.02684 6.38117 6.50440 6.78520 7.12562 7.42986 7.83444 8.30587 9.11751 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.003297 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.197343 B = 8489.926222 C = 9676.966352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.087 3.913 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.058 4.058 7 C -0.133 4.133 8 C 0.504 3.496 9 O -0.587 6.587 10 N -0.698 5.698 11 C 0.144 3.856 12 C 0.161 3.839 13 H 0.033 0.967 14 C -0.123 4.123 15 C -0.102 4.102 16 C -0.131 4.131 17 C 0.157 3.843 18 N -0.608 5.608 19 C -0.322 4.322 20 H 0.045 0.955 21 C -0.057 4.057 22 N -0.941 5.941 23 Si 1.090 2.910 24 H -0.291 1.291 25 H -0.287 1.287 26 H -0.292 1.292 27 C -0.111 4.111 28 C -0.133 4.133 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.407 0.593 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.045 0.955 49 H 0.038 0.962 50 H 0.009 0.991 51 H 0.260 0.740 52 H 0.042 0.958 53 H 0.048 0.952 54 H 0.077 0.923 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 11.532 -8.289 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.029 3.971 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.077 4.077 7 C -0.173 4.173 8 C 0.292 3.708 9 O -0.470 6.470 10 N -0.347 5.347 11 C 0.019 3.981 12 C 0.055 3.945 13 H 0.050 0.950 14 C -0.162 4.162 15 C -0.139 4.139 16 C -0.170 4.170 17 C 0.032 3.968 18 N -0.334 5.334 19 C -0.452 4.452 20 H 0.062 0.938 21 C -0.256 4.256 22 N -0.583 5.583 23 Si 0.919 3.081 24 H -0.219 1.219 25 H -0.213 1.213 26 H -0.218 1.218 27 C -0.148 4.148 28 C -0.171 4.171 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.243 0.757 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.056 0.944 50 H 0.027 0.973 51 H 0.070 0.930 52 H 0.061 0.939 53 H 0.067 0.933 54 H 0.096 0.904 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.187 10.836 -8.463 14.373 hybrid contribution 0.709 0.555 0.792 1.199 sum -3.478 11.392 -7.671 14.168 Atomic orbital electron populations 1.22899 0.80549 1.03223 1.00447 1.87932 1.20473 1.28699 1.95071 1.22247 0.95549 0.84420 0.94846 1.21637 0.93322 1.00713 0.99131 1.21477 0.99955 0.99471 0.93574 1.20806 0.94150 0.98112 0.94642 1.21754 1.02557 1.00819 0.92174 1.21101 0.77708 0.83884 0.88074 1.90564 1.53116 1.25249 1.78044 1.46064 1.48801 1.25311 1.14507 1.21128 0.97927 0.95961 0.83040 1.20877 0.93399 0.85434 0.94773 0.94981 1.21890 1.00013 0.98760 0.95532 1.21345 0.97699 0.94500 1.00392 1.21893 0.99551 0.98212 0.97333 1.20714 0.94441 0.91403 0.90245 1.44318 1.23021 1.09431 1.56643 1.19892 0.93462 0.97963 1.33902 0.93751 1.26472 1.06828 0.95232 0.97030 1.70839 1.00447 1.39314 1.47730 0.83119 0.73163 0.75440 0.76379 1.21870 1.21272 1.21825 1.21472 0.95227 0.98993 0.99130 1.21965 0.99292 0.99344 0.96519 0.92534 0.89448 0.94245 0.90470 0.89319 0.90271 0.90496 0.92497 0.91046 0.87175 0.89882 0.75654 0.94558 0.91305 0.89940 0.93142 0.92139 0.90447 0.91228 0.93606 0.94376 0.97322 0.92992 0.93930 0.93295 0.90447 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.82 113.37 1.23 1.69 16 2 O -0.40 -9.86 9.00 -148.98 -1.34 -11.20 16 3 C 0.09 1.80 2.92 30.59 0.09 1.89 16 4 C -0.11 -2.08 5.66 30.60 0.17 -1.90 16 5 C -0.11 -2.45 5.06 30.60 0.15 -2.29 16 6 C -0.06 -1.63 1.84 -10.79 -0.02 -1.65 16 7 C -0.13 -4.17 5.18 29.85 0.15 -4.01 16 8 C 0.50 19.25 7.55 87.66 0.66 19.91 16 9 O -0.59 -25.06 13.96 -3.05 -0.04 -25.10 16 10 N -0.70 -27.40 3.86 -463.05 -1.79 -29.19 16 11 C 0.14 5.55 4.43 86.38 0.38 5.94 16 12 C 0.16 6.10 3.01 44.97 0.14 6.24 16 13 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 14 C -0.12 -3.86 5.37 30.67 0.16 -3.69 16 15 C -0.10 -2.98 5.89 30.62 0.18 -2.80 16 16 C -0.13 -4.58 6.06 30.53 0.19 -4.39 16 17 C 0.16 6.97 4.68 86.22 0.40 7.37 16 18 N -0.61 -27.77 2.79 -676.07 -1.88 -29.65 16 19 C -0.32 -16.48 6.81 84.03 0.57 -15.91 16 20 H 0.04 2.42 5.98 -2.91 -0.02 2.41 16 21 C -0.06 -3.06 4.73 84.86 0.40 -2.66 16 22 N -0.94 -53.61 12.57 21.65 0.27 -53.33 16 23 Si 1.09 51.35 29.97 68.60 2.06 53.40 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 C -0.11 -3.48 4.80 30.59 0.15 -3.33 16 28 C -0.13 -3.26 5.63 30.60 0.17 -3.09 16 29 H 0.06 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 0.70 7.87 -2.39 -0.02 0.69 16 32 H 0.08 1.26 7.79 -2.39 -0.02 1.24 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.49 7.68 -2.39 -0.02 1.47 16 37 H 0.07 2.02 7.95 -2.39 -0.02 2.00 16 38 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 40 H 0.41 16.82 7.39 -92.71 -0.68 16.13 16 41 H 0.04 1.59 7.42 -2.39 -0.02 1.58 16 42 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 43 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 48 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.04 1.95 6.59 -2.39 -0.02 1.93 16 50 H 0.01 0.40 7.82 -2.39 -0.02 0.38 16 51 H 0.26 14.87 6.68 -92.71 -0.62 14.25 16 52 H 0.04 1.47 7.68 -2.39 -0.02 1.45 16 53 H 0.05 1.85 5.95 -2.39 -0.01 1.83 16 54 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 55 H 0.06 1.38 7.87 -2.39 -0.02 1.36 16 Total: -1.00 -63.70 408.79 2.77 -60.93 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.31 Total: 36.85 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.18 Total: -2.70 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -3.40 Total: -112.17 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.38 Total: -36.31 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 2.06 Total: 53.40 kcal Total: -63.70 2.77 -60.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714119685.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.501 kcal (2) G-P(sol) polarization free energy of solvation -63.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds