Wall clock time and date at job start Tue Mar 31 2020 22:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00140 * 2 1 4 4 C 1.52997 * 109.46940 * 150.00295 * 3 2 1 5 5 C 1.53000 * 109.47185 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47073 * 299.99771 * 5 4 3 7 7 C 1.52996 * 109.47540 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47486 * 174.99869 * 7 6 5 9 9 O 1.21287 * 120.00110 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00190 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00237 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47222 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.58836 * 300.22343 * 12 11 10 14 14 C 1.53195 * 109.58733 * 179.97438 * 12 11 10 15 15 C 1.53041 * 109.31472 * 185.43601 * 14 12 11 16 16 C 1.53038 * 109.53446 * 61.36764 * 15 14 12 17 17 C 1.53188 * 109.31608 * 298.63212 * 16 15 14 18 18 N 1.46927 * 108.77293 * 54.63653 * 17 16 15 19 19 C 1.36938 * 120.62637 * 126.36820 * 18 17 16 20 20 H 1.08004 * 119.99685 * 210.91060 * 19 18 17 21 21 C 1.38813 * 120.00125 * 30.91593 * 19 18 17 22 22 N 1.31615 * 119.99777 * 14.24595 * 21 19 18 23 23 Si 1.86800 * 119.99955 * 194.24410 * 21 19 18 24 24 H 1.48507 * 109.46989 * 59.99783 * 23 21 19 25 25 H 1.48495 * 109.47019 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47204 * 300.00296 * 23 21 19 27 27 C 1.53005 * 109.46863 * 59.99823 * 6 5 4 28 28 C 1.52991 * 109.47231 * 300.00029 * 27 6 5 29 29 H 1.08998 * 109.46960 * 299.99702 * 1 2 3 30 30 H 1.09003 * 109.47163 * 59.99306 * 1 2 3 31 31 H 1.08996 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47204 * 30.00389 * 3 2 1 33 33 H 1.09001 * 109.47793 * 59.99793 * 4 3 2 34 34 H 1.09004 * 109.47064 * 299.99833 * 4 3 2 35 35 H 1.09006 * 109.47196 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.47367 * 59.99843 * 5 4 3 37 37 H 1.09004 * 109.47083 * 300.00246 * 6 5 4 38 38 H 1.09000 * 109.46786 * 54.99957 * 7 6 5 39 39 H 1.08993 * 109.47235 * 295.00434 * 7 6 5 40 40 H 0.96998 * 120.00454 * 359.97438 * 10 8 7 41 41 H 1.08995 * 109.46845 * 59.99504 * 11 10 8 42 42 H 1.09003 * 109.46520 * 299.99886 * 11 10 8 43 43 H 1.08994 * 109.49702 * 305.39211 * 14 12 11 44 44 H 1.09004 * 109.49373 * 65.48709 * 14 12 11 45 45 H 1.08996 * 109.45564 * 181.38859 * 15 14 12 46 46 H 1.09006 * 109.45752 * 301.36314 * 15 14 12 47 47 H 1.08994 * 109.50014 * 58.59284 * 16 15 14 48 48 H 1.09002 * 109.49254 * 178.68440 * 16 15 14 49 49 H 1.09001 * 109.59059 * 174.42641 * 17 16 15 50 50 H 1.09004 * 109.58560 * 294.71061 * 17 16 15 51 51 H 0.97003 * 119.99963 * 180.02562 * 22 21 19 52 52 H 1.08993 * 109.47067 * 60.00830 * 27 6 5 53 53 H 1.09003 * 109.46592 * 180.02562 * 27 6 5 54 54 H 1.09004 * 109.47409 * 300.00002 * 28 27 6 55 55 H 1.09006 * 109.47007 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2631 0.7212 5 6 3.9810 2.6610 0.7218 6 6 4.1884 3.1275 -0.7205 7 6 4.8099 4.5255 -0.7200 8 6 5.1273 4.9347 -2.1352 9 8 4.8803 4.1824 -3.0539 10 7 5.6857 6.1367 -2.3801 11 6 5.9938 6.5347 -3.7560 12 6 6.6154 7.9327 -3.7554 13 1 5.9151 8.6438 -3.3173 14 6 6.9392 8.3513 -5.1930 15 6 7.6826 9.6889 -5.1754 16 6 8.9985 9.5330 -4.4098 17 6 8.6981 9.1278 -2.9633 18 7 7.8600 7.9211 -2.9746 19 6 8.2320 6.8067 -2.2711 20 1 7.9567 5.8255 -2.6288 21 6 8.9628 6.9381 -1.0983 22 7 9.0601 8.1123 -0.5116 23 14 9.8082 5.4485 -0.3527 24 1 10.7857 4.8961 -1.3246 25 1 10.5180 5.8516 0.8878 26 1 8.7934 4.4139 -0.0290 27 6 2.8397 3.1697 -1.4417 28 6 2.2176 1.7720 -1.4423 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.3450 1.9994 0.5139 33 1 4.0242 0.5692 0.2074 34 1 3.2111 0.9312 1.7489 35 1 4.9417 2.6309 1.2360 36 1 3.3157 3.3546 1.2359 37 1 4.8537 2.4338 -1.2346 38 1 5.7266 4.5154 -0.1305 39 1 4.1064 5.2357 -0.2856 40 1 5.8829 6.7386 -1.6454 41 1 5.0768 6.5454 -4.3450 42 1 6.6968 5.8242 -4.1909 43 1 7.5666 7.5924 -5.6603 44 1 6.0133 8.4571 -5.7584 45 1 7.8925 10.0011 -6.1984 46 1 7.0646 10.4414 -4.6856 47 1 9.6066 8.7631 -4.8845 48 1 9.5383 10.4799 -4.4177 49 1 9.6317 8.9194 -2.4408 50 1 8.1701 9.9373 -2.4592 51 1 9.5711 8.2042 0.3077 52 1 2.1744 3.8634 -0.9277 53 1 2.9875 3.5017 -2.4694 54 1 2.8830 1.0783 -1.9564 55 1 1.2569 1.8020 -1.9565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714119686.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:44 Heat of formation + Delta-G solvation = -108.217350 kcal Electronic energy + Delta-G solvation = -31158.289731 eV Core-core repulsion = 27193.779389 eV Total energy + Delta-G solvation = -3964.510342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.06900 -40.03368 -39.24123 -37.50915 -35.59819 -34.87611 -33.07141 -32.16136 -31.71875 -31.63889 -28.64861 -27.56497 -26.90786 -25.79049 -23.81151 -23.65769 -22.68259 -22.08719 -21.11123 -20.77847 -20.57189 -18.51311 -17.62031 -17.52027 -17.32389 -16.76065 -16.67558 -16.16669 -16.02183 -15.77630 -15.53618 -15.03159 -14.98181 -14.84458 -14.72997 -14.54515 -14.17167 -14.00726 -13.85507 -13.58261 -13.45814 -13.25514 -12.97067 -12.83351 -12.78415 -12.69240 -12.55134 -12.41510 -12.30522 -12.04315 -12.02189 -11.79172 -11.76758 -11.56383 -11.53529 -11.48121 -11.18659 -11.12110 -11.07201 -10.60173 -10.49081 -10.27213 -9.72997 -8.54134 -7.80826 -5.27302 1.42978 1.48586 1.52383 1.84999 2.48625 2.54665 2.82980 3.34423 3.59758 3.73981 3.76695 3.84858 4.01637 4.04081 4.14739 4.22109 4.27707 4.30611 4.39769 4.44145 4.47902 4.50814 4.54449 4.56567 4.57854 4.60218 4.65618 4.68621 4.78075 4.83549 4.86383 4.88173 4.96982 5.00388 5.04501 5.13086 5.14719 5.16973 5.21756 5.23159 5.28403 5.28649 5.39407 5.46763 5.51150 5.55797 5.64277 5.72616 5.79163 5.85054 6.31590 6.46383 6.83430 7.21764 7.47825 7.90825 8.44397 9.23615 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.002847 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.646317 B = 9831.307093 C =11235.018570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.091 3.909 4 C -0.112 4.112 5 C -0.107 4.107 6 C -0.068 4.068 7 C -0.133 4.133 8 C 0.503 3.497 9 O -0.589 6.589 10 N -0.699 5.699 11 C 0.141 3.859 12 C 0.160 3.840 13 H 0.033 0.967 14 C -0.123 4.123 15 C -0.102 4.102 16 C -0.136 4.136 17 C 0.178 3.822 18 N -0.600 5.600 19 C -0.235 4.235 20 H 0.060 0.940 21 C -0.032 4.032 22 N -0.925 5.925 23 Si 0.937 3.063 24 H -0.294 1.294 25 H -0.295 1.295 26 H -0.274 1.274 27 C -0.109 4.109 28 C -0.132 4.132 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.410 0.590 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.064 0.936 49 H 0.048 0.952 50 H 0.002 0.998 51 H 0.248 0.752 52 H 0.072 0.928 53 H 0.061 0.939 54 H 0.049 0.951 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 -5.556 0.437 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.034 3.966 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.087 4.087 7 C -0.172 4.172 8 C 0.291 3.709 9 O -0.471 6.471 10 N -0.349 5.349 11 C 0.017 3.983 12 C 0.054 3.946 13 H 0.050 0.950 14 C -0.162 4.162 15 C -0.140 4.140 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.325 5.325 19 C -0.366 4.366 20 H 0.078 0.922 21 C -0.228 4.228 22 N -0.571 5.571 23 Si 0.767 3.233 24 H -0.221 1.221 25 H -0.221 1.221 26 H -0.199 1.199 27 C -0.146 4.146 28 C -0.170 4.170 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.132 0.868 40 H 0.247 0.753 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.020 0.980 51 H 0.057 0.943 52 H 0.090 0.910 53 H 0.080 0.920 54 H 0.068 0.932 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.625 -6.193 -0.054 15.882 hybrid contribution 1.059 -0.225 0.719 1.300 sum -13.566 -6.418 0.665 15.023 Atomic orbital electron populations 1.22950 0.79907 1.03623 1.00684 1.87874 1.21178 1.28790 1.95189 1.22213 0.95120 0.84102 0.95180 1.21546 0.95088 0.97448 1.00920 1.21542 1.01700 0.96034 0.95126 1.20869 0.96829 0.94269 0.96690 1.21739 1.03399 0.99279 0.92817 1.21106 0.76566 0.80951 0.92259 1.90584 1.55853 1.52899 1.47786 1.46094 1.60437 1.18376 1.09951 1.21168 0.98221 0.95488 0.83420 1.20874 0.87760 0.93566 0.92418 0.94973 1.21901 1.00571 0.97609 0.96136 1.21345 0.95917 0.96707 1.00033 1.22056 0.97715 1.00049 0.97674 1.20570 0.94643 0.87033 0.92513 1.44241 1.20346 1.12527 1.55359 1.19162 1.30296 0.86621 1.00517 0.92198 1.25477 1.02916 0.97684 0.96762 1.70107 1.44228 1.23646 1.19114 0.85818 0.79147 0.80992 0.77346 1.22099 1.22091 1.19934 1.21560 0.95345 0.96360 1.01371 1.21933 1.00803 0.96940 0.97305 0.92905 0.93712 0.88684 0.90703 0.92578 0.90258 0.90990 0.89810 0.93012 0.89132 0.86804 0.75311 0.91234 0.94217 0.93036 0.90072 0.90826 0.92346 0.93766 0.91752 0.93310 0.98002 0.94271 0.90950 0.92018 0.93181 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.41 -9.07 10.35 -148.98 -1.54 -10.61 16 3 C 0.09 1.86 2.61 30.59 0.08 1.94 16 4 C -0.11 -2.31 5.57 30.59 0.17 -2.14 16 5 C -0.11 -2.17 5.20 30.59 0.16 -2.02 16 6 C -0.07 -1.76 1.84 -10.79 -0.02 -1.78 16 7 C -0.13 -3.72 5.17 29.85 0.15 -3.57 16 8 C 0.50 17.99 7.55 87.66 0.66 18.65 16 9 O -0.59 -24.12 13.97 -3.05 -0.04 -24.16 16 10 N -0.70 -25.77 3.87 -463.06 -1.79 -27.57 16 11 C 0.14 5.20 4.43 86.37 0.38 5.59 16 12 C 0.16 5.92 3.00 44.97 0.13 6.06 16 13 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 14 C -0.12 -3.81 5.37 30.67 0.16 -3.64 16 15 C -0.10 -3.04 5.88 30.62 0.18 -2.85 16 16 C -0.14 -4.82 6.08 30.67 0.19 -4.63 16 17 C 0.18 7.99 5.27 86.36 0.46 8.44 16 18 N -0.60 -27.06 2.97 -675.23 -2.01 -29.06 16 19 C -0.24 -11.68 7.02 84.03 0.59 -11.09 16 20 H 0.06 3.08 5.87 -2.91 -0.02 3.06 16 21 C -0.03 -1.65 4.96 84.86 0.42 -1.23 16 22 N -0.92 -50.37 11.23 21.65 0.24 -50.13 16 23 Si 0.94 43.14 29.58 68.60 2.03 45.17 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C -0.11 -2.70 4.94 30.59 0.15 -2.55 16 28 C -0.13 -3.05 5.54 30.59 0.17 -2.88 16 29 H 0.05 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.04 0.62 7.87 -2.39 -0.02 0.60 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.28 7.79 -2.38 -0.02 1.27 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.05 1.63 7.96 -2.38 -0.02 1.61 16 38 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.41 15.82 7.43 -92.71 -0.69 15.13 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.04 1.65 7.40 -2.39 -0.02 1.64 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.05 2.52 6.19 -2.39 -0.01 2.51 16 50 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 51 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 52 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.06 1.90 5.95 -2.39 -0.01 1.88 16 54 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 55 H 0.07 1.40 7.87 -2.38 -0.02 1.38 16 Total: -1.00 -60.96 411.82 2.31 -58.65 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.15 Total: 33.83 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.27 Total: 3.88 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -3.56 Total: -106.76 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.58 Total: -34.77 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -60.96 2.31 -58.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714119686.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.563 kcal (2) G-P(sol) polarization free energy of solvation -60.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds