Wall clock time and date at job start Tue Mar 31 2020 21:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99816 * 2 1 4 4 C 1.50700 * 120.00006 * 180.02562 * 2 1 3 5 5 H 1.08990 * 109.47465 * 4.99290 * 4 2 1 6 6 C 1.53000 * 109.46738 * 244.99257 * 4 2 1 7 7 C 1.50703 * 109.46912 * 175.00201 * 6 4 2 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 4 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.53627 * 108.54183 * 126.37295 * 10 9 7 12 12 C 1.53040 * 109.24108 * 54.85576 * 11 10 9 13 13 C 1.53042 * 109.53871 * 298.50936 * 12 11 10 14 14 H 1.08998 * 109.52719 * 301.40163 * 13 12 11 15 15 C 1.52997 * 109.50035 * 181.31758 * 13 12 11 16 16 C 1.53002 * 109.47116 * 65.16302 * 15 13 12 17 17 N 1.46502 * 109.47168 * 180.02562 * 16 15 13 18 18 C 1.36933 * 120.00340 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99239 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00290 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00079 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99990 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47329 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47081 * 119.99979 * 22 20 18 25 25 H 1.48504 * 109.47483 * 240.00124 * 22 20 18 26 26 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 27 27 O 1.42905 * 109.47095 * 124.99844 * 4 2 1 28 28 C 1.42907 * 113.99648 * 269.99847 * 27 4 2 29 29 C 1.52994 * 109.46869 * 180.02562 * 28 27 4 30 30 H 1.08000 * 119.99461 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.99977 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47161 * 270.00608 * 3 2 1 33 33 H 1.08998 * 109.46783 * 30.00227 * 3 2 1 34 34 H 1.09000 * 109.47098 * 150.00440 * 3 2 1 35 35 H 1.09002 * 109.47398 * 295.00279 * 6 4 2 36 36 H 1.09001 * 109.47194 * 55.00459 * 6 4 2 37 37 H 1.09005 * 109.58858 * 246.20434 * 10 9 7 38 38 H 1.08995 * 109.58867 * 6.63230 * 10 9 7 39 39 H 1.08999 * 109.63425 * 294.86802 * 11 10 9 40 40 H 1.09002 * 109.43315 * 174.72619 * 11 10 9 41 41 H 1.08995 * 109.46070 * 178.49571 * 12 11 10 42 42 H 1.08999 * 109.46244 * 58.53099 * 12 11 10 43 43 H 1.09004 * 109.47481 * 185.16758 * 15 13 12 44 44 H 1.09006 * 109.46715 * 305.16420 * 15 13 12 45 45 H 1.09001 * 109.46713 * 300.00125 * 16 15 13 46 46 H 1.08998 * 109.47087 * 60.00166 * 16 15 13 47 47 H 0.97006 * 119.99436 * 0.02562 * 17 16 15 48 48 H 0.97000 * 120.00056 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.58920 * 353.36599 * 26 9 7 50 50 H 1.09001 * 109.58884 * 113.65283 * 26 9 7 51 51 H 1.08999 * 109.46528 * 300.00034 * 28 27 4 52 52 H 1.08998 * 109.46833 * 59.99905 * 28 27 4 53 53 H 1.09008 * 109.47104 * 299.99754 * 29 28 27 54 54 H 1.08997 * 109.47326 * 59.99501 * 29 28 27 55 55 H 1.09000 * 109.47320 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3587 -2.1316 -0.0904 6 6 2.8466 -1.4424 1.3067 7 6 3.5011 -2.7988 1.3601 8 8 3.3552 -3.5790 0.4431 9 7 4.2477 -3.1453 2.4273 10 6 4.4379 -2.2089 3.5435 11 6 4.0372 -2.9154 4.8474 12 6 4.8288 -4.2186 4.9788 13 6 4.4908 -5.1431 3.8070 14 1 3.4197 -5.3452 3.7996 15 6 5.2576 -6.4586 3.9567 16 6 4.7664 -7.1962 5.2040 17 7 5.5010 -8.4555 5.3477 18 6 5.2300 -9.2903 6.3987 19 1 4.4748 -9.0200 7.1220 20 6 5.9257 -10.4837 6.5346 21 7 6.8456 -10.8132 5.6528 22 14 5.5564 -11.6221 7.9688 23 1 4.4880 -11.0267 8.8110 24 1 5.1028 -12.9383 7.4520 25 1 6.7843 -11.8065 8.7834 26 6 4.8925 -4.4638 2.4935 27 8 2.9709 -1.3307 -1.1043 28 6 2.4138 -1.8756 -2.3022 29 6 3.4681 -1.8541 -3.4106 30 1 -0.5399 -0.9354 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 2.2451 1.6199 -1.0277 33 1 1.4744 2.0647 0.5139 34 1 3.0160 1.1748 0.5138 35 1 3.6118 -0.6676 1.3550 36 1 2.1659 -1.3339 2.1511 37 1 5.4845 -1.9085 3.5942 38 1 3.8102 -1.3304 3.3945 39 1 2.9703 -3.1380 4.8305 40 1 4.2606 -2.2670 5.6947 41 1 4.5668 -4.7097 5.9160 42 1 5.8961 -3.9975 4.9708 43 1 5.0887 -7.0798 3.0771 44 1 6.3228 -6.2490 4.0544 45 1 4.9353 -6.5749 6.0835 46 1 3.7012 -7.4057 5.1063 47 1 6.1796 -8.6979 4.6982 48 1 7.3321 -11.6470 5.7480 49 1 4.5649 -5.0735 1.6515 50 1 5.9753 -4.3433 2.4580 51 1 2.0981 -2.9031 -2.1213 52 1 1.5536 -1.2794 -2.6067 53 1 3.7843 -0.8267 -3.5915 54 1 4.3280 -2.4505 -3.1058 55 1 3.0434 -2.2701 -4.3242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714211371.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:56 Heat of formation + Delta-G solvation = -93.582114 kcal Electronic energy + Delta-G solvation = -29971.590590 eV Core-core repulsion = 26007.714879 eV Total energy + Delta-G solvation = -3963.875711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39100 -39.72951 -38.61052 -36.91978 -36.11689 -35.02276 -33.20299 -32.75716 -32.30706 -31.08972 -29.05756 -28.21351 -26.61754 -25.96875 -24.64277 -23.67644 -23.41988 -22.75605 -21.15803 -19.90589 -19.77704 -19.12550 -18.08101 -17.78470 -17.06377 -16.77143 -16.56203 -16.27868 -16.01519 -15.70046 -15.39846 -15.37215 -15.03943 -14.97798 -14.74533 -14.53266 -14.28131 -14.06152 -14.01504 -13.85778 -13.40757 -13.30728 -13.18806 -12.99062 -12.91981 -12.79834 -12.64093 -12.46148 -12.41783 -12.38064 -12.08586 -11.99811 -11.94851 -11.86293 -11.76650 -11.67244 -11.51945 -11.26738 -10.93851 -10.75529 -10.47152 -10.08939 -9.59793 -9.02201 -7.97465 -5.27116 1.19200 1.45536 1.47175 1.57350 1.66489 2.01198 2.54391 2.77689 3.35918 3.43907 3.70618 3.76220 3.86611 3.91018 3.92746 4.07300 4.09264 4.15260 4.18795 4.32347 4.35617 4.37425 4.41464 4.47591 4.49460 4.57907 4.60946 4.65414 4.74752 4.76128 4.77513 4.85548 4.86003 4.88300 4.90907 4.94680 5.01077 5.03722 5.06118 5.15906 5.19625 5.22807 5.23428 5.32467 5.43860 5.46552 5.52020 5.56656 5.64354 5.81679 6.25144 6.32408 6.46052 7.20860 7.30475 8.06849 8.29986 9.26534 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.001902 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.558539 B =14719.264319 C =15409.996858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 C -0.109 4.109 4 C 0.139 3.861 5 H 0.053 0.947 6 C -0.127 4.127 7 C 0.509 3.491 8 O -0.581 6.581 9 N -0.612 5.612 10 C 0.102 3.898 11 C -0.128 4.128 12 C -0.117 4.117 13 C -0.082 4.082 14 H 0.062 0.938 15 C -0.108 4.108 16 C 0.155 3.845 17 N -0.750 5.750 18 C -0.246 4.246 19 H 0.076 0.924 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.977 3.023 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.290 1.290 26 C 0.122 3.878 27 O -0.384 6.384 28 C 0.062 3.938 29 C -0.145 4.145 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.030 0.970 46 H 0.011 0.989 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.065 0.935 50 H 0.073 0.927 51 H 0.032 0.968 52 H 0.055 0.945 53 H 0.067 0.933 54 H 0.046 0.954 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.976 31.616 -11.052 35.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.080 3.920 5 H 0.071 0.929 6 C -0.166 4.166 7 C 0.299 3.701 8 O -0.461 6.461 9 N -0.344 5.344 10 C -0.019 4.019 11 C -0.166 4.166 12 C -0.155 4.155 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.146 4.146 16 C 0.029 3.971 17 N -0.393 5.393 18 C -0.378 4.378 19 H 0.094 0.906 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.217 1.217 26 C -0.001 4.001 27 O -0.304 6.304 28 C -0.014 4.014 29 C -0.202 4.202 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.029 0.971 47 H 0.204 0.796 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.091 0.909 51 H 0.051 0.949 52 H 0.073 0.927 53 H 0.086 0.914 54 H 0.065 0.935 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.963 31.258 -11.358 35.018 hybrid contribution 0.051 -1.730 0.278 1.753 sum -10.912 29.528 -11.080 33.372 Atomic orbital electron populations 1.23953 0.94894 1.02890 0.99748 1.22228 0.95682 0.96139 1.01501 1.20745 1.00284 0.93282 1.02263 1.20816 0.90620 0.94229 0.86306 0.92887 1.21884 1.01914 0.94097 0.98746 1.21158 0.78164 0.89783 0.80995 1.90677 1.62745 1.54464 1.38202 1.48241 1.49956 1.16271 1.19956 1.22168 1.03336 0.91959 0.84476 1.21983 1.00202 0.96436 0.97977 1.21637 1.00914 0.95686 0.97251 1.21289 0.99578 0.93915 0.95368 0.91964 1.21563 1.00175 0.95678 0.97220 1.20815 0.93826 0.86244 0.96225 1.42658 1.45517 1.20644 1.30446 1.19696 1.15978 0.99335 1.02815 0.90587 1.25652 0.99361 1.00214 1.01968 1.69835 1.28582 1.25035 1.38726 0.85015 0.77390 0.78369 0.78629 1.18891 1.22037 1.21734 1.21471 0.97266 0.83929 0.97456 1.87865 1.39327 1.83342 1.19870 1.22452 0.96971 0.96678 0.85349 1.21706 0.98635 1.02795 0.97050 0.88666 0.86351 0.91890 0.90497 0.91416 0.86028 0.85040 0.89875 0.86889 0.91770 0.88145 0.91889 0.91252 0.93159 0.91669 0.95168 0.97143 0.79585 0.93945 0.91690 0.90899 0.94914 0.92712 0.91423 0.93492 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 13.91 67.78 0.94 -1.04 16 2 C -0.16 -2.02 5.05 -16.49 -0.08 -2.10 16 3 C -0.11 -1.09 9.84 71.24 0.70 -0.39 16 4 C 0.14 2.50 1.86 29.85 0.06 2.56 16 5 H 0.05 1.14 7.25 -2.39 -0.02 1.12 16 6 C -0.13 -1.90 3.56 29.85 0.11 -1.80 16 7 C 0.51 12.02 7.58 87.66 0.66 12.69 16 8 O -0.58 -19.16 14.83 10.75 0.16 -19.01 16 9 N -0.61 -12.68 2.97 -817.97 -2.43 -15.11 16 10 C 0.10 1.26 6.37 86.51 0.55 1.81 16 11 C -0.13 -1.77 6.10 30.82 0.19 -1.59 16 12 C -0.12 -2.45 4.95 30.62 0.15 -2.30 16 13 C -0.08 -2.13 2.34 -10.70 -0.03 -2.15 16 14 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 15 C -0.11 -3.60 4.80 30.59 0.15 -3.46 16 16 C 0.16 6.41 6.02 86.38 0.52 6.93 16 17 N -0.75 -39.99 5.60 -343.45 -1.92 -41.91 16 18 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 20 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 21 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 22 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 C 0.12 3.09 5.72 86.38 0.49 3.58 16 27 O -0.38 -8.57 9.07 -135.21 -1.23 -9.80 16 28 C 0.06 1.25 6.46 71.98 0.46 1.71 16 29 C -0.14 -2.48 10.28 71.98 0.74 -1.74 16 30 H 0.09 1.10 7.84 -2.91 -0.02 1.08 16 31 H 0.12 0.93 8.04 -2.91 -0.02 0.90 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.08 0.52 8.06 -2.39 -0.02 0.50 16 34 H 0.07 0.63 7.02 -2.39 -0.02 0.61 16 35 H 0.12 1.36 6.99 -2.39 -0.02 1.35 16 36 H 0.13 1.25 7.70 -2.39 -0.02 1.23 16 37 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.11 0.73 5.93 -2.39 -0.01 0.72 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.48 6.51 -2.39 -0.02 1.47 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.03 1.21 6.54 -2.39 -0.02 1.19 16 46 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.37 21.10 7.67 -92.70 -0.71 20.39 16 48 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 49 H 0.06 2.01 7.01 -2.39 -0.02 1.99 16 50 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.03 0.77 8.08 -2.39 -0.02 0.75 16 52 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 54 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 55 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.65 431.49 3.95 -71.71 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.13 Total: 30.81 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 6.92 Total: -4.96 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -4.07 Total: -117.84 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.07 Total: -28.81 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -75.65 3.95 -71.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714211371.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.876 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds