Wall clock time and date at job start Tue Mar 31 2020 22:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00399 * 2 1 4 4 C 1.50705 * 119.99763 * 180.02562 * 2 1 3 5 5 H 1.08998 * 109.47074 * 5.00344 * 4 2 1 6 6 C 1.53001 * 109.46829 * 244.99878 * 4 2 1 7 7 C 1.50708 * 109.46662 * 174.99986 * 6 4 2 8 8 O 1.21283 * 120.00057 * 359.97438 * 7 6 4 9 9 N 1.34770 * 119.99673 * 180.02562 * 7 6 4 10 10 C 1.46927 * 120.63304 * 0.02562 * 9 7 6 11 11 C 1.53196 * 108.77413 * 233.58546 * 10 9 7 12 12 C 1.53031 * 109.31477 * 305.36304 * 11 10 9 13 13 C 1.53046 * 109.53726 * 61.36734 * 12 11 10 14 14 H 1.08990 * 109.49711 * 58.58414 * 13 12 11 15 15 C 1.52997 * 109.49842 * 178.68561 * 13 12 11 16 16 C 1.53007 * 109.46916 * 294.99868 * 15 13 12 17 17 N 1.46500 * 109.47175 * 180.02562 * 16 15 13 18 18 C 1.36936 * 120.00144 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99908 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00228 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99624 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00210 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46964 * 59.99827 * 22 20 18 24 24 H 1.48498 * 109.47279 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47350 * 300.00088 * 22 20 18 26 26 C 1.46923 * 120.63141 * 179.97438 * 9 7 6 27 27 O 1.42901 * 109.46932 * 125.00011 * 4 2 1 28 28 C 1.42900 * 114.00019 * 270.00027 * 27 4 2 29 29 C 1.52995 * 109.47059 * 180.02562 * 28 27 4 30 30 H 1.08007 * 119.99803 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00325 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47089 * 270.00379 * 3 2 1 33 33 H 1.09006 * 109.47113 * 30.00047 * 3 2 1 34 34 H 1.08996 * 109.47324 * 149.99774 * 3 2 1 35 35 H 1.08996 * 109.46815 * 55.00472 * 6 4 2 36 36 H 1.08998 * 109.47155 * 294.99765 * 6 4 2 37 37 H 1.08993 * 109.58956 * 113.79989 * 10 9 7 38 38 H 1.08999 * 109.70338 * 353.44355 * 10 9 7 39 39 H 1.09004 * 109.49841 * 185.40709 * 11 10 9 40 40 H 1.09000 * 109.49679 * 65.31895 * 11 10 9 41 41 H 1.08995 * 109.46212 * 301.34533 * 12 11 10 42 42 H 1.09006 * 109.45283 * 181.37857 * 12 11 10 43 43 H 1.09000 * 109.47293 * 54.99131 * 15 13 12 44 44 H 1.08999 * 109.47661 * 175.00128 * 15 13 12 45 45 H 1.09000 * 109.47221 * 300.00037 * 16 15 13 46 46 H 1.08999 * 109.47259 * 60.00265 * 16 15 13 47 47 H 0.97002 * 119.99901 * 0.02562 * 17 16 15 48 48 H 0.97009 * 119.99924 * 180.02562 * 21 20 18 49 49 H 1.09009 * 109.58590 * 6.62804 * 26 9 7 50 50 H 1.08995 * 109.59117 * 246.20038 * 26 9 7 51 51 H 1.09006 * 109.46894 * 299.99976 * 28 27 4 52 52 H 1.08999 * 109.47107 * 60.00206 * 28 27 4 53 53 H 1.09007 * 109.47492 * 59.99828 * 29 28 27 54 54 H 1.08997 * 109.47336 * 180.02562 * 29 28 27 55 55 H 1.09006 * 109.47031 * 299.99626 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 1 1.3585 -2.1316 -0.0906 6 6 2.8464 -1.4426 1.3067 7 6 3.5008 -2.7991 1.3600 8 8 3.3549 -3.5793 0.4430 9 7 4.2473 -3.1456 2.4273 10 6 4.4319 -2.2120 3.5467 11 6 5.9324 -2.0425 3.8050 12 6 6.5671 -3.4179 4.0225 13 6 6.3869 -4.2696 2.7638 14 1 6.8473 -3.7653 1.9144 15 6 7.0503 -5.6328 2.9703 16 6 8.5616 -5.4470 3.1200 17 7 9.1969 -6.7522 3.3171 18 6 10.5545 -6.8360 3.4753 19 1 11.1570 -5.9399 3.4544 20 6 11.1566 -8.0728 3.6616 21 7 10.4224 -9.1650 3.6866 22 14 13.0086 -8.1872 3.8767 23 1 13.4173 -7.4057 5.0715 24 1 13.3990 -9.6084 4.0582 25 1 13.6817 -7.6384 2.6723 26 6 4.8911 -4.4646 2.4941 27 8 2.9709 -1.3308 -1.1042 28 6 2.4138 -1.8755 -2.3022 29 6 3.4682 -1.8540 -3.4106 30 1 -0.5400 0.9354 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 2.2452 1.6197 -1.0277 33 1 1.4745 2.0647 0.5139 34 1 3.0159 1.1747 0.5138 35 1 2.1656 -1.3341 2.1510 36 1 3.6117 -0.6679 1.3551 37 1 3.9504 -2.6116 4.4391 38 1 3.9929 -1.2463 3.2960 39 1 6.0816 -1.4283 4.6930 40 1 6.3972 -1.5591 2.9456 41 1 6.0850 -3.9109 4.8667 42 1 7.6304 -3.2982 4.2308 43 1 6.6506 -6.0986 3.8711 44 1 6.8460 -6.2704 2.1102 45 1 8.9614 -4.9810 2.2193 46 1 8.7659 -4.8095 3.9802 47 1 8.6560 -7.5572 3.3348 48 1 10.8431 -10.0293 3.8171 49 1 4.7555 -4.9858 1.5463 50 1 4.4470 -5.0476 3.3008 51 1 2.0980 -2.9031 -2.1214 52 1 1.5537 -1.2793 -2.6068 53 1 4.3281 -2.4505 -3.1058 54 1 3.0432 -2.2691 -4.3244 55 1 3.7844 -0.8266 -3.5914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714211373.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:01 Heat of formation + Delta-G solvation = -93.391919 kcal Electronic energy + Delta-G solvation = -30076.912806 eV Core-core repulsion = 26113.045343 eV Total energy + Delta-G solvation = -3963.867463 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39190 -39.73178 -38.61420 -36.92092 -36.11633 -35.02073 -33.20621 -32.76534 -32.31562 -31.09252 -29.05532 -28.21513 -26.62196 -25.96370 -24.63904 -23.68161 -23.41952 -22.75648 -21.15738 -19.89941 -19.77941 -19.12033 -18.05798 -17.82427 -17.03416 -16.77923 -16.56661 -16.30853 -15.97811 -15.65444 -15.46830 -15.31241 -15.08292 -14.95906 -14.74320 -14.58781 -14.26895 -14.06709 -13.98935 -13.85077 -13.41793 -13.31007 -13.19745 -12.98289 -12.86725 -12.79259 -12.63309 -12.47189 -12.43186 -12.39035 -12.15008 -11.99428 -11.94543 -11.86207 -11.76037 -11.67475 -11.51693 -11.26492 -10.91811 -10.75416 -10.46945 -10.08453 -9.59668 -9.02067 -7.96849 -5.26620 1.19814 1.45520 1.49565 1.55774 1.66109 2.01923 2.54932 2.78796 3.36049 3.44166 3.70165 3.76322 3.87530 3.90835 3.92328 4.07224 4.09819 4.15667 4.18571 4.31320 4.35344 4.36794 4.44101 4.47129 4.49934 4.57793 4.59804 4.65758 4.74525 4.76333 4.77402 4.84942 4.86187 4.87722 4.90626 4.94356 5.00637 5.03420 5.06058 5.15472 5.19530 5.22158 5.23375 5.32336 5.43889 5.46129 5.51892 5.56745 5.64807 5.82104 6.25333 6.33540 6.46309 7.21077 7.30785 8.07077 8.30570 9.26638 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.001982 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.076624 B =14125.171806 C =14862.479823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.156 4.156 3 C -0.110 4.110 4 C 0.138 3.862 5 H 0.056 0.944 6 C -0.127 4.127 7 C 0.509 3.491 8 O -0.581 6.581 9 N -0.612 5.612 10 C 0.102 3.898 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.083 4.083 14 H 0.058 0.942 15 C -0.107 4.107 16 C 0.155 3.845 17 N -0.750 5.750 18 C -0.250 4.250 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.978 3.022 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.278 1.278 26 C 0.122 3.878 27 O -0.387 6.387 28 C 0.063 3.937 29 C -0.146 4.146 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.009 0.991 46 H 0.030 0.970 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.034 0.966 52 H 0.056 0.944 53 H 0.043 0.957 54 H 0.086 0.914 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.823 25.543 -3.970 35.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.167 4.167 4 C 0.080 3.920 5 H 0.074 0.926 6 C -0.167 4.167 7 C 0.299 3.701 8 O -0.461 6.461 9 N -0.344 5.344 10 C -0.019 4.019 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.103 4.103 14 H 0.076 0.924 15 C -0.146 4.146 16 C 0.029 3.971 17 N -0.392 5.392 18 C -0.381 4.381 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.204 1.204 26 C -0.001 4.001 27 O -0.306 6.306 28 C -0.013 4.013 29 C -0.203 4.203 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.027 0.973 46 H 0.048 0.952 47 H 0.204 0.796 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.053 0.947 52 H 0.074 0.926 53 H 0.063 0.937 54 H 0.105 0.895 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.544 25.290 -4.420 34.834 hybrid contribution 0.839 -1.315 -0.159 1.568 sum -22.705 23.974 -4.578 33.335 Atomic orbital electron populations 1.23955 0.94777 1.02964 0.99588 1.22214 0.95730 0.96044 1.01637 1.20745 1.00265 0.93462 1.02187 1.20837 0.90617 0.94314 0.86229 0.92558 1.21890 1.01864 0.93986 0.98925 1.21161 0.78470 0.89718 0.80760 1.90677 1.62933 1.54496 1.37972 1.48242 1.49520 1.16603 1.20053 1.22070 0.96998 0.93959 0.88886 1.21911 0.94960 0.96693 1.03176 1.21632 1.01459 0.95870 0.96457 1.21293 0.94454 0.95330 0.99196 0.92356 1.21555 0.94366 0.97096 1.01538 1.20811 0.91935 0.87232 0.97138 1.42633 1.04568 1.04431 1.87584 1.19622 0.85067 0.93075 1.40379 0.90690 1.25655 1.02759 0.95167 1.03509 1.69826 1.36048 0.97683 1.58534 0.85148 0.79669 0.76288 0.78276 1.20047 1.21957 1.20445 1.21480 0.91816 0.84678 1.02130 1.87879 1.39454 1.83360 1.19958 1.22440 0.96855 0.96762 0.85261 1.21717 0.98689 1.02715 0.97223 0.86385 0.88423 0.92027 0.90423 0.91612 0.84700 0.86414 0.89504 0.86978 0.88062 0.92199 0.91009 0.92009 0.91491 0.93184 0.97349 0.95177 0.79556 0.93924 0.91728 0.90508 0.94738 0.92562 0.93736 0.89517 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 13.91 67.78 0.94 -0.90 16 2 C -0.16 -2.01 5.05 -16.49 -0.08 -2.09 16 3 C -0.11 -1.16 9.84 71.23 0.70 -0.45 16 4 C 0.14 2.48 1.86 29.85 0.06 2.54 16 5 H 0.06 1.16 7.25 -2.39 -0.02 1.14 16 6 C -0.13 -1.91 3.56 29.85 0.11 -1.80 16 7 C 0.51 12.02 7.58 87.66 0.66 12.69 16 8 O -0.58 -19.15 14.83 10.73 0.16 -18.99 16 9 N -0.61 -12.68 2.97 -818.81 -2.43 -15.11 16 10 C 0.10 1.26 6.34 86.36 0.55 1.81 16 11 C -0.13 -1.88 6.08 30.67 0.19 -1.70 16 12 C -0.12 -2.49 4.95 30.62 0.15 -2.34 16 13 C -0.08 -2.21 2.34 -10.70 -0.03 -2.23 16 14 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 15 C -0.11 -3.61 4.80 30.60 0.15 -3.47 16 16 C 0.15 6.50 6.02 86.38 0.52 7.02 16 17 N -0.75 -40.22 5.60 -343.44 -1.92 -42.14 16 18 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 21 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 22 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 C 0.12 3.09 5.72 86.38 0.49 3.58 16 27 O -0.39 -8.95 9.07 -135.21 -1.23 -10.18 16 28 C 0.06 1.31 6.46 71.98 0.46 1.77 16 29 C -0.15 -2.72 10.28 71.98 0.74 -1.98 16 30 H 0.12 0.86 8.04 -2.91 -0.02 0.84 16 31 H 0.10 1.02 7.84 -2.91 -0.02 0.99 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.55 8.06 -2.38 -0.02 0.53 16 34 H 0.06 0.68 7.02 -2.39 -0.02 0.66 16 35 H 0.14 1.16 7.94 -2.39 -0.02 1.14 16 36 H 0.12 1.44 6.75 -2.39 -0.02 1.42 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.11 0.75 5.95 -2.39 -0.01 0.73 16 39 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.50 6.51 -2.38 -0.02 1.48 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.03 1.22 6.54 -2.39 -0.02 1.21 16 47 H 0.37 21.18 7.67 -92.71 -0.71 20.47 16 48 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 49 H 0.06 2.00 7.01 -2.38 -0.02 1.98 16 50 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.03 0.81 8.09 -2.38 -0.02 0.80 16 52 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 54 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 55 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -76.00 431.46 3.93 -72.06 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.13 Total: 31.46 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.92 Total: -5.46 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -4.07 Total: -118.09 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.07 Total: -29.17 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.00 3.93 -72.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714211373.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.329 kcal (2) G-P(sol) polarization free energy of solvation -75.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds