Wall clock time and date at job start Tue Mar 31 2020 22:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99901 * 2 1 4 4 C 1.50694 * 120.00134 * 179.97438 * 2 1 3 5 5 H 1.09002 * 109.47371 * 355.01025 * 4 2 1 6 6 C 1.53006 * 109.46744 * 115.00578 * 4 2 1 7 7 C 1.50702 * 109.46708 * 185.00107 * 6 4 2 8 8 O 1.21280 * 120.00608 * 359.97438 * 7 6 4 9 9 N 1.34784 * 119.99526 * 180.02562 * 7 6 4 10 10 C 1.46919 * 120.63188 * 359.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 233.51696 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 14 14 H 1.09001 * 109.49731 * 58.65147 * 13 12 11 15 15 C 1.53005 * 109.49929 * 178.74923 * 13 12 11 16 16 C 1.52999 * 109.46836 * 294.83699 * 15 13 12 17 17 N 1.46503 * 109.47174 * 179.97438 * 16 15 13 18 18 C 1.36937 * 120.00257 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99849 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00049 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99621 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 119.99944 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47483 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47280 * 120.00122 * 22 20 18 25 25 H 1.48507 * 109.47280 * 240.00010 * 22 20 18 26 26 C 1.46928 * 120.62829 * 179.97438 * 9 7 6 27 27 O 1.42899 * 109.47472 * 235.00248 * 4 2 1 28 28 C 1.42906 * 113.99573 * 90.00290 * 27 4 2 29 29 C 1.52996 * 109.46973 * 180.02562 * 28 27 4 30 30 H 1.08005 * 120.00077 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00265 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47023 * 269.99250 * 3 2 1 33 33 H 1.09001 * 109.47548 * 29.99446 * 3 2 1 34 34 H 1.08998 * 109.47342 * 149.99180 * 3 2 1 35 35 H 1.08996 * 109.47105 * 65.00394 * 6 4 2 36 36 H 1.08994 * 109.47182 * 304.99945 * 6 4 2 37 37 H 1.09002 * 109.58751 * 353.37646 * 10 9 7 38 38 H 1.08996 * 109.58750 * 113.65831 * 10 9 7 39 39 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 40 40 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 41 41 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 42 42 H 1.09000 * 109.44413 * 181.23506 * 12 11 10 43 43 H 1.08994 * 109.47050 * 54.83581 * 15 13 12 44 44 H 1.08997 * 109.47189 * 174.84362 * 15 13 12 45 45 H 1.08994 * 109.47649 * 300.00086 * 16 15 13 46 46 H 1.09005 * 109.46972 * 60.00356 * 16 15 13 47 47 H 0.96998 * 119.99888 * 0.02562 * 17 16 15 48 48 H 0.97006 * 119.99309 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.58787 * 246.20220 * 26 9 7 50 50 H 1.09007 * 109.58600 * 6.48533 * 26 9 7 51 51 H 1.08994 * 109.47140 * 299.99958 * 28 27 4 52 52 H 1.08996 * 109.47367 * 60.00230 * 28 27 4 53 53 H 1.09007 * 109.47209 * 300.00098 * 29 28 27 54 54 H 1.09005 * 109.47653 * 59.99865 * 29 28 27 55 55 H 1.09005 * 109.47424 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 1.3586 -2.1316 0.0903 6 6 2.8465 -1.4423 -1.3067 7 6 3.5010 -2.7988 -1.3601 8 8 3.3558 -3.5787 -0.4428 9 7 4.2485 -3.1448 -2.4270 10 6 4.4340 -2.2106 -3.5457 11 6 4.0413 -2.9134 -4.8491 12 6 4.8313 -4.2181 -4.9781 13 6 4.4934 -5.1426 -3.8064 14 1 3.4223 -5.3449 -3.7997 15 6 5.2611 -6.4577 -3.9556 16 6 4.7709 -7.1957 -5.2029 17 7 5.5064 -8.4546 -5.3462 18 6 5.2370 -9.2891 -6.3979 19 1 4.4826 -9.0191 -7.1220 20 6 5.9335 -10.4822 -6.5333 21 7 6.8526 -10.8115 -5.6505 22 14 5.5665 -11.6202 -7.9684 23 1 4.4988 -11.0252 -8.8117 24 1 6.7955 -11.8038 -8.7815 25 1 5.1130 -12.9369 -7.4526 26 6 4.8933 -4.4633 -2.4933 27 8 2.9708 -1.3308 1.1042 28 6 2.4137 -1.8757 2.3021 29 6 3.4676 -1.8531 3.4109 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9352 -0.0004 32 1 2.2452 1.6197 -1.0277 33 1 1.4744 2.0648 0.5137 34 1 3.0158 1.1749 0.5139 35 1 3.6117 -0.6676 -1.3550 36 1 2.1659 -1.3338 -2.1511 37 1 3.8027 -1.3343 -3.3985 38 1 5.4787 -1.9040 -3.5963 39 1 2.9744 -3.1362 -4.8351 40 1 4.2667 -2.2638 -5.6948 41 1 5.8986 -3.9964 -4.9697 42 1 4.5699 -4.7093 -5.9154 43 1 6.3262 -6.2476 -4.0528 44 1 5.0921 -7.0789 -3.0761 45 1 3.7058 -7.4058 -5.1058 46 1 4.9399 -6.5745 -6.0826 47 1 6.1842 -8.6969 -4.6961 48 1 7.3390 -11.6454 -5.7450 49 1 5.9760 -4.3428 -2.4594 50 1 4.5669 -5.0725 -1.6502 51 1 1.5536 -1.2796 2.6067 52 1 2.0980 -2.9032 2.1213 53 1 4.3281 -2.4491 3.1065 54 1 3.7830 -0.8255 3.5917 55 1 3.0429 -2.2692 4.3245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714211375.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:09 Heat of formation + Delta-G solvation = -94.022787 kcal Electronic energy + Delta-G solvation = -29971.221940 eV Core-core repulsion = 26007.327120 eV Total energy + Delta-G solvation = -3963.894820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39198 -39.73529 -38.61573 -36.92308 -36.10206 -35.02403 -33.20684 -32.76729 -32.31762 -31.09239 -29.06198 -28.19849 -26.62259 -25.96833 -24.64446 -23.67593 -23.42072 -22.75511 -21.15841 -19.90460 -19.77147 -19.12485 -18.07139 -17.78826 -17.05736 -16.77630 -16.57648 -16.27202 -16.01315 -15.69893 -15.40811 -15.37388 -15.01332 -14.98135 -14.74253 -14.54034 -14.28570 -14.07371 -14.01092 -13.87461 -13.40611 -13.31266 -13.12687 -12.98882 -12.92117 -12.81063 -12.61428 -12.49662 -12.42080 -12.38523 -12.08623 -11.99852 -11.94358 -11.86335 -11.76955 -11.67206 -11.51480 -11.27134 -10.93840 -10.75628 -10.48034 -10.08061 -9.59943 -9.02196 -7.97517 -5.27118 1.19819 1.45543 1.47178 1.57362 1.66575 2.01291 2.54405 2.77346 3.35885 3.44494 3.70224 3.76347 3.86473 3.91826 3.92399 4.07268 4.09420 4.15624 4.19250 4.32104 4.35694 4.38367 4.41983 4.47670 4.49420 4.57976 4.60863 4.65703 4.72619 4.76515 4.81205 4.85434 4.85894 4.87966 4.91273 4.95105 5.01031 5.03513 5.06552 5.15880 5.20505 5.23071 5.23462 5.32451 5.43816 5.46561 5.51885 5.56682 5.64668 5.82780 6.25129 6.32076 6.46095 7.20904 7.30456 8.06858 8.29969 9.26482 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.001902 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.204748 B =14719.770195 C =15411.845119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 C -0.113 4.113 4 C 0.139 3.861 5 H 0.053 0.947 6 C -0.126 4.126 7 C 0.509 3.491 8 O -0.581 6.581 9 N -0.612 5.612 10 C 0.102 3.898 11 C -0.128 4.128 12 C -0.117 4.117 13 C -0.082 4.082 14 H 0.062 0.938 15 C -0.108 4.108 16 C 0.155 3.845 17 N -0.750 5.750 18 C -0.247 4.247 19 H 0.076 0.924 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.265 1.265 24 H -0.290 1.290 25 H -0.293 1.293 26 C 0.122 3.878 27 O -0.384 6.384 28 C 0.062 3.938 29 C -0.145 4.145 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.011 0.989 46 H 0.030 0.970 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.055 0.945 52 H 0.033 0.967 53 H 0.046 0.954 54 H 0.067 0.933 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 31.616 10.997 35.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.155 4.155 3 C -0.169 4.169 4 C 0.080 3.920 5 H 0.071 0.929 6 C -0.166 4.166 7 C 0.299 3.701 8 O -0.461 6.461 9 N -0.344 5.344 10 C -0.019 4.019 11 C -0.166 4.166 12 C -0.155 4.155 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.146 4.146 16 C 0.029 3.971 17 N -0.393 5.393 18 C -0.378 4.378 19 H 0.094 0.906 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.217 1.217 25 H -0.220 1.220 26 C -0.001 4.001 27 O -0.304 6.304 28 C -0.014 4.014 29 C -0.202 4.202 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.150 0.850 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.029 0.971 46 H 0.048 0.952 47 H 0.204 0.796 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.073 0.927 52 H 0.051 0.949 53 H 0.065 0.935 54 H 0.086 0.914 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.980 31.261 11.307 35.009 hybrid contribution 0.045 -1.730 -0.290 1.755 sum -10.935 29.530 11.017 33.361 Atomic orbital electron populations 1.23946 0.94909 1.02861 0.99875 1.22221 0.95665 0.96158 1.01431 1.20765 1.00114 0.93090 1.02944 1.20805 0.90632 0.94238 0.86299 0.92899 1.21870 1.01893 0.94076 0.98715 1.21170 0.78130 0.89795 0.81011 1.90677 1.62740 1.54477 1.38189 1.48238 1.49947 1.16357 1.19868 1.22063 1.03401 0.91993 0.84483 1.21916 1.00256 0.96461 0.97985 1.21640 1.00919 0.95675 0.97259 1.21271 0.99586 0.93931 0.95367 0.91968 1.21559 1.00169 0.95667 0.97226 1.20815 0.93820 0.86250 0.96226 1.42657 1.45563 1.20689 1.30356 1.19699 1.16003 0.99370 1.02758 0.90582 1.25656 0.99360 1.00224 1.01968 1.69842 1.28616 1.25024 1.38690 0.85013 0.77387 0.78363 0.78627 1.18888 1.21737 1.22038 1.21455 0.97278 0.83946 0.97453 1.87859 1.39333 1.83308 1.19893 1.22451 0.96979 0.96682 0.85335 1.21708 0.98639 1.02796 0.97049 0.88691 0.86392 0.89928 0.91281 0.92179 0.86057 0.85048 0.86902 0.89931 0.91805 0.88060 0.91279 0.91879 0.91668 0.93153 0.97140 0.95165 0.79586 0.93951 0.90927 0.91671 0.92717 0.94894 0.93488 0.91424 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 13.91 67.78 0.94 -1.06 16 2 C -0.15 -2.01 5.04 -16.49 -0.08 -2.09 16 3 C -0.11 -1.11 9.73 71.24 0.69 -0.42 16 4 C 0.14 2.50 1.86 29.85 0.06 2.55 16 5 H 0.05 1.13 7.25 -2.39 -0.02 1.12 16 6 C -0.13 -1.89 3.60 29.85 0.11 -1.78 16 7 C 0.51 12.02 7.58 87.66 0.66 12.69 16 8 O -0.58 -19.16 14.83 10.77 0.16 -19.01 16 9 N -0.61 -12.69 2.97 -818.97 -2.44 -15.12 16 10 C 0.10 1.26 6.34 86.36 0.55 1.81 16 11 C -0.13 -1.77 6.09 30.68 0.19 -1.58 16 12 C -0.12 -2.46 4.95 30.63 0.15 -2.30 16 13 C -0.08 -2.13 2.34 -10.73 -0.03 -2.15 16 14 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 15 C -0.11 -3.60 4.80 30.60 0.15 -3.45 16 16 C 0.16 6.41 6.02 86.38 0.52 6.93 16 17 N -0.75 -39.98 5.60 -343.45 -1.92 -41.91 16 18 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 21 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 22 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 26 C 0.12 3.09 5.71 86.35 0.49 3.58 16 27 O -0.38 -8.57 8.76 -135.19 -1.18 -9.75 16 28 C 0.06 1.25 6.46 71.98 0.46 1.71 16 29 C -0.14 -2.48 10.28 71.98 0.74 -1.74 16 30 H 0.09 1.11 7.84 -2.91 -0.02 1.08 16 31 H 0.12 0.94 8.04 -2.91 -0.02 0.91 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.57 8.06 -2.39 -0.02 0.55 16 34 H 0.06 0.75 7.72 -2.39 -0.02 0.73 16 35 H 0.12 1.36 7.84 -2.39 -0.02 1.35 16 36 H 0.13 1.24 7.69 -2.39 -0.02 1.22 16 37 H 0.11 0.73 5.93 -2.39 -0.01 0.71 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.06 1.49 6.51 -2.39 -0.02 1.47 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.03 1.21 6.54 -2.38 -0.02 1.19 16 47 H 0.37 21.10 7.67 -92.71 -0.71 20.39 16 48 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 49 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.06 2.01 7.00 -2.38 -0.02 2.00 16 51 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.03 0.77 8.08 -2.39 -0.02 0.76 16 53 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 54 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 55 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -75.65 432.62 3.96 -71.69 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.12 Total: 30.82 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 6.91 Total: -5.00 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -4.08 Total: -117.85 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.02 Total: -28.76 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -75.65 3.96 -71.69 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714211375.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.330 kcal (2) G-P(sol) polarization free energy of solvation -75.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds