Wall clock time and date at job start Tue Mar 31 2020 21:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00495 * 2 1 4 4 C 1.50703 * 119.99773 * 179.97438 * 2 1 3 5 5 H 1.09007 * 109.47327 * 5.00326 * 4 2 1 6 6 C 1.53006 * 109.47148 * 245.00647 * 4 2 1 7 7 C 1.50698 * 109.47184 * 175.00254 * 6 4 2 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 4 10 10 C 1.46924 * 120.62981 * 359.71541 * 9 7 6 11 11 C 1.53618 * 108.54299 * 126.37305 * 10 9 7 12 12 C 1.53038 * 109.24352 * 54.85410 * 11 10 9 13 13 C 1.53002 * 109.46114 * 178.48949 * 12 11 10 14 14 C 1.53006 * 109.47238 * 295.07261 * 13 12 11 15 15 N 1.46501 * 109.46752 * 179.97438 * 14 13 12 16 16 C 1.36942 * 119.99737 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99934 * 0.02562 * 16 15 14 18 18 C 1.38802 * 120.00217 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99905 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00238 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46861 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47157 * 120.00055 * 20 18 16 23 23 H 1.48500 * 109.47317 * 240.00228 * 20 18 16 24 24 C 1.53042 * 109.53856 * 298.51127 * 12 11 10 25 25 C 1.46929 * 120.63006 * 179.97438 * 9 7 6 26 26 O 1.42896 * 109.47234 * 125.00255 * 4 2 1 27 27 C 1.42898 * 114.00499 * 270.00131 * 26 4 2 28 28 C 1.52994 * 109.47313 * 179.97438 * 27 26 4 29 29 H 1.07999 * 120.00083 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99509 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47524 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46441 * 299.99604 * 3 2 1 33 33 H 1.08993 * 109.47283 * 59.99024 * 3 2 1 34 34 H 1.09001 * 109.47002 * 294.99659 * 6 4 2 35 35 H 1.08993 * 109.46955 * 55.00096 * 6 4 2 36 36 H 1.08999 * 109.58555 * 246.20421 * 10 9 7 37 37 H 1.08996 * 109.58826 * 6.62389 * 10 9 7 38 38 H 1.09004 * 109.63577 * 294.86133 * 11 10 9 39 39 H 1.09001 * 109.45970 * 174.74125 * 11 10 9 40 40 H 1.08992 * 109.44845 * 58.52752 * 12 11 10 41 41 H 1.09007 * 109.46976 * 55.06543 * 13 12 11 42 42 H 1.08998 * 109.47591 * 175.06763 * 13 12 11 43 43 H 1.08994 * 109.46840 * 299.99335 * 14 13 12 44 44 H 1.08994 * 109.47097 * 59.99760 * 14 13 12 45 45 H 0.96998 * 120.00784 * 0.02562 * 15 14 13 46 46 H 0.97003 * 119.99636 * 180.02562 * 19 18 16 47 47 H 1.08995 * 109.49479 * 301.41314 * 24 12 11 48 48 H 1.09002 * 109.52064 * 181.33187 * 24 12 11 49 49 H 1.09003 * 109.58761 * 353.36851 * 25 9 7 50 50 H 1.08991 * 109.58780 * 113.65362 * 25 9 7 51 51 H 1.09003 * 109.46922 * 300.00244 * 27 26 4 52 52 H 1.09000 * 109.46674 * 59.99292 * 27 26 4 53 53 H 1.09007 * 109.46937 * 179.97438 * 28 27 26 54 54 H 1.08993 * 109.47290 * 299.99992 * 28 27 26 55 55 H 1.09000 * 109.47365 * 60.00494 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3585 -2.1318 -0.0887 6 6 2.8463 -1.4415 1.3081 7 6 3.5007 -2.7979 1.3627 8 8 3.3549 -3.5789 0.4462 9 7 4.2471 -3.1436 2.4303 10 6 4.4371 -2.2065 3.5458 11 6 4.0361 -2.9120 4.8502 12 6 4.8276 -4.2151 4.9827 13 6 4.4597 -4.9034 6.2987 14 6 4.9108 -4.0326 7.4732 15 7 4.5579 -4.6915 8.7332 16 6 4.8653 -4.0952 9.9271 17 1 5.3675 -3.1391 9.9397 18 6 4.5315 -4.7196 11.1210 19 7 3.9200 -5.8850 11.1056 20 14 4.9501 -3.9059 12.7495 21 1 5.6305 -2.6107 12.4952 22 1 3.7025 -3.6666 13.5185 23 1 5.8498 -4.7934 13.5295 24 6 4.4898 -5.1405 3.8115 25 6 4.8909 -4.4626 2.4981 26 8 2.9709 -1.3318 -1.1030 27 6 2.4140 -1.8776 -2.3005 28 6 3.4680 -1.8559 -3.4091 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 3.1352 1.1058 0.0005 32 1 1.8003 1.8765 -0.8901 33 1 1.8002 1.8767 0.8898 34 1 3.6116 -0.6668 1.3559 35 1 2.1655 -1.3324 2.1522 36 1 5.4837 -1.9061 3.5965 37 1 3.8096 -1.3280 3.3960 38 1 2.9692 -3.1345 4.8332 39 1 4.2590 -2.2632 5.6973 40 1 5.8948 -3.9939 4.9746 41 1 3.3799 -5.0450 6.3452 42 1 4.9559 -5.8723 6.3532 43 1 5.9905 -3.8910 7.4268 44 1 4.4145 -3.0637 7.4188 45 1 4.1072 -5.5503 8.7220 46 1 3.6864 -6.3211 11.9400 47 1 3.4186 -5.3419 3.8043 48 1 5.0356 -6.0779 3.9188 49 1 4.5628 -5.0731 1.6569 50 1 5.9737 -4.3429 2.4624 51 1 2.0981 -2.9049 -2.1189 52 1 1.5538 -1.2816 -2.6055 53 1 3.0433 -2.2727 -4.3225 54 1 3.7835 -0.8285 -3.5906 55 1 4.3284 -2.4517 -3.1043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714266462.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:13 Heat of formation + Delta-G solvation = -93.299302 kcal Electronic energy + Delta-G solvation = -29877.671396 eV Core-core repulsion = 25913.807949 eV Total energy + Delta-G solvation = -3963.863447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36793 -39.72273 -38.66612 -36.84376 -36.10658 -35.02093 -33.25718 -32.64930 -32.03672 -30.87792 -29.76524 -28.23011 -26.71052 -25.36074 -24.26846 -24.12267 -23.66090 -22.38257 -21.31841 -19.91674 -19.77576 -19.11541 -18.07969 -17.78275 -17.01247 -16.67155 -16.58671 -16.40070 -15.84073 -15.49699 -15.47505 -15.36469 -15.14167 -14.80958 -14.74495 -14.61864 -14.27861 -14.06030 -13.98355 -13.89138 -13.40352 -13.21393 -13.14154 -13.03733 -12.86806 -12.80106 -12.60028 -12.48101 -12.47309 -12.28447 -12.17342 -12.05173 -11.95984 -11.95483 -11.79233 -11.61534 -11.34836 -11.18012 -10.88804 -10.75697 -10.47074 -10.08268 -9.60968 -8.98411 -7.95153 -5.24100 1.18361 1.47721 1.48753 1.58957 1.66490 2.04380 2.56449 2.78105 3.38777 3.44174 3.70260 3.79620 3.84252 3.91104 3.93756 4.06800 4.15122 4.19442 4.23820 4.33579 4.36544 4.39115 4.40916 4.49093 4.51054 4.56680 4.62498 4.65897 4.72837 4.78962 4.81058 4.85175 4.86693 4.92054 4.93620 4.99738 5.02047 5.06760 5.07258 5.11483 5.18055 5.23716 5.24177 5.30982 5.42113 5.50409 5.56898 5.62634 5.63858 5.81186 6.27857 6.32628 6.44610 7.20191 7.33208 8.11168 8.32758 9.28909 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.001876 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.870180 B =14923.324451 C =15821.480883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.156 4.156 3 C -0.111 4.111 4 C 0.141 3.859 5 H 0.055 0.945 6 C -0.131 4.131 7 C 0.513 3.487 8 O -0.578 6.578 9 N -0.612 5.612 10 C 0.108 3.892 11 C -0.130 4.130 12 C -0.074 4.074 13 C -0.108 4.108 14 C 0.151 3.849 15 N -0.751 5.751 16 C -0.243 4.243 17 H 0.078 0.922 18 C -0.081 4.081 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.264 1.264 22 H -0.293 1.293 23 H -0.294 1.294 24 C -0.120 4.120 25 C 0.115 3.885 26 O -0.384 6.384 27 C 0.061 3.939 28 C -0.144 4.144 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.029 0.971 45 H 0.371 0.629 46 H 0.251 0.749 47 H 0.054 0.946 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.035 0.965 52 H 0.052 0.948 53 H 0.086 0.914 54 H 0.065 0.935 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 13.982 -28.583 31.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.156 4.156 3 C -0.167 4.167 4 C 0.083 3.917 5 H 0.073 0.927 6 C -0.171 4.171 7 C 0.303 3.697 8 O -0.458 6.458 9 N -0.345 5.345 10 C -0.014 4.014 11 C -0.168 4.168 12 C -0.093 4.093 13 C -0.146 4.146 14 C 0.025 3.975 15 N -0.394 5.394 16 C -0.375 4.375 17 H 0.096 0.904 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.188 1.188 22 H -0.220 1.220 23 H -0.221 1.221 24 C -0.158 4.158 25 C -0.008 4.008 26 O -0.303 6.303 27 C -0.015 4.015 28 C -0.201 4.201 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.047 0.953 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.054 0.946 52 H 0.071 0.929 53 H 0.105 0.895 54 H 0.084 0.916 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.792 13.798 -28.965 32.205 hybrid contribution -0.381 -0.724 1.229 1.476 sum -3.174 13.074 -27.736 30.827 Atomic orbital electron populations 1.23922 0.94980 1.02877 0.99861 1.22256 0.95690 0.96266 1.01407 1.20730 1.00095 0.93417 1.02506 1.20780 0.90574 0.94121 0.86219 0.92679 1.21877 1.01906 0.94614 0.98667 1.20999 0.78106 0.89592 0.81037 1.90654 1.62793 1.54250 1.38086 1.48257 1.50001 1.16685 1.19534 1.22056 1.03275 0.91896 0.84157 1.22084 1.00108 0.96814 0.97765 1.21001 1.00671 0.95084 0.92524 1.21632 1.00500 0.98662 0.93846 1.20896 0.96702 0.95190 0.84686 1.42687 1.71276 1.23781 1.01627 1.19718 1.30196 1.02297 0.85324 0.90407 1.25625 1.02242 0.98005 1.01382 1.69837 1.48166 1.17936 1.26373 0.85041 0.76989 0.77933 0.79618 1.18772 1.22038 1.22105 1.21873 1.01528 0.98895 0.93542 1.21530 0.97566 0.83744 0.97933 1.87860 1.39220 1.83355 1.19889 1.22466 0.96981 0.96744 0.85313 1.21702 0.98655 1.02753 0.97012 0.88509 0.86558 0.92017 0.91439 0.90336 0.86305 0.85625 0.89641 0.87431 0.92177 0.89819 0.90135 0.93020 0.92721 0.96372 0.95306 0.79722 0.94060 0.92709 0.90101 0.90720 0.90354 0.94623 0.92938 0.89545 0.91635 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 13.95 67.78 0.95 -1.24 16 2 C -0.16 -2.17 5.05 -16.48 -0.08 -2.25 16 3 C -0.11 -1.25 9.69 71.24 0.69 -0.56 16 4 C 0.14 2.55 1.78 29.85 0.05 2.61 16 5 H 0.06 1.15 7.25 -2.38 -0.02 1.13 16 6 C -0.13 -2.07 3.59 29.85 0.11 -1.96 16 7 C 0.51 11.54 7.58 87.66 0.66 12.20 16 8 O -0.58 -17.44 14.83 10.74 0.16 -17.28 16 9 N -0.61 -12.01 2.97 -818.18 -2.43 -14.44 16 10 C 0.11 1.60 6.37 86.51 0.55 2.15 16 11 C -0.13 -2.50 5.16 30.81 0.16 -2.35 16 12 C -0.07 -1.65 2.15 -10.77 -0.02 -1.67 16 13 C -0.11 -3.32 4.80 30.60 0.15 -3.18 16 14 C 0.15 5.81 6.02 86.38 0.52 6.33 16 15 N -0.75 -38.55 5.60 -343.46 -1.92 -40.47 16 16 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 19 N -0.97 -60.18 13.06 21.65 0.28 -59.89 16 20 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 24 C -0.12 -2.53 5.36 30.66 0.16 -2.37 16 25 C 0.11 2.35 6.43 86.35 0.55 2.91 16 26 O -0.38 -8.24 9.01 -135.21 -1.22 -9.46 16 27 C 0.06 1.15 6.46 71.98 0.46 1.62 16 28 C -0.14 -2.22 10.28 71.98 0.74 -1.48 16 29 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 30 H 0.12 1.08 8.05 -2.91 -0.02 1.06 16 31 H 0.06 0.77 7.50 -2.39 -0.02 0.75 16 32 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.12 1.50 7.45 -2.39 -0.02 1.48 16 35 H 0.13 1.48 7.70 -2.39 -0.02 1.46 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.09 5.93 -2.39 -0.01 1.08 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.67 6.50 -2.39 -0.02 1.65 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.03 1.07 6.53 -2.39 -0.02 1.06 16 45 H 0.37 20.43 7.67 -92.71 -0.71 19.72 16 46 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.07 1.78 7.01 -2.39 -0.02 1.76 16 50 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.04 0.76 8.09 -2.39 -0.02 0.74 16 52 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 54 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 55 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.22 432.28 3.99 -68.24 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.13 Total: 31.44 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 6.96 Total: -6.27 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -4.07 Total: -114.81 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.06 Total: -26.74 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -72.22 3.99 -68.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714266462.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.063 kcal (2) G-P(sol) polarization free energy of solvation -72.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds