Wall clock time and date at job start Tue Mar 31 2020 21:57:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30998 * 1
3 3 C 1.50699 * 120.00495 * 2 1
4 4 C 1.50703 * 119.99773 * 179.97438 * 2 1 3
5 5 H 1.09007 * 109.47327 * 5.00326 * 4 2 1
6 6 C 1.53006 * 109.47148 * 245.00647 * 4 2 1
7 7 C 1.50698 * 109.47184 * 175.00254 * 6 4 2
8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 4
9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 4
10 10 C 1.46924 * 120.62981 * 359.71541 * 9 7 6
11 11 C 1.53618 * 108.54299 * 126.37305 * 10 9 7
12 12 C 1.53038 * 109.24352 * 54.85410 * 11 10 9
13 13 C 1.53002 * 109.46114 * 178.48949 * 12 11 10
14 14 C 1.53006 * 109.47238 * 295.07261 * 13 12 11
15 15 N 1.46501 * 109.46752 * 179.97438 * 14 13 12
16 16 C 1.36942 * 119.99737 * 179.97438 * 15 14 13
17 17 H 1.08003 * 119.99934 * 0.02562 * 16 15 14
18 18 C 1.38802 * 120.00217 * 180.02562 * 16 15 14
19 19 N 1.31620 * 119.99905 * 0.02562 * 18 16 15
20 20 Si 1.86802 * 120.00238 * 180.02562 * 18 16 15
21 21 H 1.48498 * 109.46861 * 0.02562 * 20 18 16
22 22 H 1.48500 * 109.47157 * 120.00055 * 20 18 16
23 23 H 1.48500 * 109.47317 * 240.00228 * 20 18 16
24 24 C 1.53042 * 109.53856 * 298.51127 * 12 11 10
25 25 C 1.46929 * 120.63006 * 179.97438 * 9 7 6
26 26 O 1.42896 * 109.47234 * 125.00255 * 4 2 1
27 27 C 1.42898 * 114.00499 * 270.00131 * 26 4 2
28 28 C 1.52994 * 109.47313 * 179.97438 * 27 26 4
29 29 H 1.07999 * 120.00083 * 180.02562 * 1 2 3
30 30 H 1.08001 * 119.99509 * 0.02562 * 1 2 3
31 31 H 1.08997 * 109.47524 * 179.97438 * 3 2 1
32 32 H 1.09004 * 109.46441 * 299.99604 * 3 2 1
33 33 H 1.08993 * 109.47283 * 59.99024 * 3 2 1
34 34 H 1.09001 * 109.47002 * 294.99659 * 6 4 2
35 35 H 1.08993 * 109.46955 * 55.00096 * 6 4 2
36 36 H 1.08999 * 109.58555 * 246.20421 * 10 9 7
37 37 H 1.08996 * 109.58826 * 6.62389 * 10 9 7
38 38 H 1.09004 * 109.63577 * 294.86133 * 11 10 9
39 39 H 1.09001 * 109.45970 * 174.74125 * 11 10 9
40 40 H 1.08992 * 109.44845 * 58.52752 * 12 11 10
41 41 H 1.09007 * 109.46976 * 55.06543 * 13 12 11
42 42 H 1.08998 * 109.47591 * 175.06763 * 13 12 11
43 43 H 1.08994 * 109.46840 * 299.99335 * 14 13 12
44 44 H 1.08994 * 109.47097 * 59.99760 * 14 13 12
45 45 H 0.96998 * 120.00784 * 0.02562 * 15 14 13
46 46 H 0.97003 * 119.99636 * 180.02562 * 19 18 16
47 47 H 1.08995 * 109.49479 * 301.41314 * 24 12 11
48 48 H 1.09002 * 109.52064 * 181.33187 * 24 12 11
49 49 H 1.09003 * 109.58761 * 353.36851 * 25 9 7
50 50 H 1.08991 * 109.58780 * 113.65362 * 25 9 7
51 51 H 1.09003 * 109.46922 * 300.00244 * 27 26 4
52 52 H 1.09000 * 109.46674 * 59.99292 * 27 26 4
53 53 H 1.09007 * 109.46937 * 179.97438 * 28 27 26
54 54 H 1.08993 * 109.47290 * 299.99992 * 28 27 26
55 55 H 1.09000 * 109.47365 * 60.00494 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 6 2.0634 -1.3052 0.0006
5 1 1.3585 -2.1318 -0.0887
6 6 2.8463 -1.4415 1.3081
7 6 3.5007 -2.7979 1.3627
8 8 3.3549 -3.5789 0.4462
9 7 4.2471 -3.1436 2.4303
10 6 4.4371 -2.2065 3.5458
11 6 4.0361 -2.9120 4.8502
12 6 4.8276 -4.2151 4.9827
13 6 4.4597 -4.9034 6.2987
14 6 4.9108 -4.0326 7.4732
15 7 4.5579 -4.6915 8.7332
16 6 4.8653 -4.0952 9.9271
17 1 5.3675 -3.1391 9.9397
18 6 4.5315 -4.7196 11.1210
19 7 3.9200 -5.8850 11.1056
20 14 4.9501 -3.9059 12.7495
21 1 5.6305 -2.6107 12.4952
22 1 3.7025 -3.6666 13.5185
23 1 5.8498 -4.7934 13.5295
24 6 4.4898 -5.1405 3.8115
25 6 4.8909 -4.4626 2.4981
26 8 2.9709 -1.3318 -1.1030
27 6 2.4140 -1.8776 -2.3005
28 6 3.4680 -1.8559 -3.4091
29 1 -0.5400 -0.9353 0.0004
30 1 -0.5399 0.9354 -0.0004
31 1 3.1352 1.1058 0.0005
32 1 1.8003 1.8765 -0.8901
33 1 1.8002 1.8767 0.8898
34 1 3.6116 -0.6668 1.3559
35 1 2.1655 -1.3324 2.1522
36 1 5.4837 -1.9061 3.5965
37 1 3.8096 -1.3280 3.3960
38 1 2.9692 -3.1345 4.8332
39 1 4.2590 -2.2632 5.6973
40 1 5.8948 -3.9939 4.9746
41 1 3.3799 -5.0450 6.3452
42 1 4.9559 -5.8723 6.3532
43 1 5.9905 -3.8910 7.4268
44 1 4.4145 -3.0637 7.4188
45 1 4.1072 -5.5503 8.7220
46 1 3.6864 -6.3211 11.9400
47 1 3.4186 -5.3419 3.8043
48 1 5.0356 -6.0779 3.9188
49 1 4.5628 -5.0731 1.6569
50 1 5.9737 -4.3429 2.4624
51 1 2.0981 -2.9049 -2.1189
52 1 1.5538 -1.2816 -2.6055
53 1 3.0433 -2.2727 -4.3225
54 1 3.7835 -0.8285 -3.5906
55 1 4.3284 -2.4517 -3.1043
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714266462.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:57:13
Heat of formation + Delta-G solvation = -93.299302 kcal
Electronic energy + Delta-G solvation = -29877.671396 eV
Core-core repulsion = 25913.807949 eV
Total energy + Delta-G solvation = -3963.863447 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.36793 -39.72273 -38.66612 -36.84376 -36.10658 -35.02093 -33.25718 -32.64930
-32.03672 -30.87792 -29.76524 -28.23011 -26.71052 -25.36074 -24.26846 -24.12267
-23.66090 -22.38257 -21.31841 -19.91674 -19.77576 -19.11541 -18.07969 -17.78275
-17.01247 -16.67155 -16.58671 -16.40070 -15.84073 -15.49699 -15.47505 -15.36469
-15.14167 -14.80958 -14.74495 -14.61864 -14.27861 -14.06030 -13.98355 -13.89138
-13.40352 -13.21393 -13.14154 -13.03733 -12.86806 -12.80106 -12.60028 -12.48101
-12.47309 -12.28447 -12.17342 -12.05173 -11.95984 -11.95483 -11.79233 -11.61534
-11.34836 -11.18012 -10.88804 -10.75697 -10.47074 -10.08268 -9.60968 -8.98411
-7.95153 -5.24100 1.18361 1.47721 1.48753 1.58957 1.66490 2.04380
2.56449 2.78105 3.38777 3.44174 3.70260 3.79620 3.84252 3.91104
3.93756 4.06800 4.15122 4.19442 4.23820 4.33579 4.36544 4.39115
4.40916 4.49093 4.51054 4.56680 4.62498 4.65897 4.72837 4.78962
4.81058 4.85175 4.86693 4.92054 4.93620 4.99738 5.02047 5.06760
5.07258 5.11483 5.18055 5.23716 5.24177 5.30982 5.42113 5.50409
5.56898 5.62634 5.63858 5.81186 6.27857 6.32628 6.44610 7.20191
7.33208 8.11168 8.32758 9.28909
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.019307 B = 0.001876 C = 0.001769
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1449.870180 B =14923.324451 C =15821.480883
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.156 4.156
3 C -0.111 4.111
4 C 0.141 3.859
5 H 0.055 0.945
6 C -0.131 4.131
7 C 0.513 3.487
8 O -0.578 6.578
9 N -0.612 5.612
10 C 0.108 3.892
11 C -0.130 4.130
12 C -0.074 4.074
13 C -0.108 4.108
14 C 0.151 3.849
15 N -0.751 5.751
16 C -0.243 4.243
17 H 0.078 0.922
18 C -0.081 4.081
19 N -0.972 5.972
20 Si 0.975 3.025
21 H -0.264 1.264
22 H -0.293 1.293
23 H -0.294 1.294
24 C -0.120 4.120
25 C 0.115 3.885
26 O -0.384 6.384
27 C 0.061 3.939
28 C -0.144 4.144
29 H 0.097 0.903
30 H 0.116 0.884
31 H 0.061 0.939
32 H 0.067 0.933
33 H 0.078 0.922
34 H 0.119 0.881
35 H 0.126 0.874
36 H 0.085 0.915
37 H 0.108 0.892
38 H 0.059 0.941
39 H 0.083 0.917
40 H 0.080 0.920
41 H 0.051 0.949
42 H 0.054 0.946
43 H 0.018 0.982
44 H 0.029 0.971
45 H 0.371 0.629
46 H 0.251 0.749
47 H 0.054 0.946
48 H 0.080 0.920
49 H 0.074 0.926
50 H 0.078 0.922
51 H 0.035 0.965
52 H 0.052 0.948
53 H 0.086 0.914
54 H 0.065 0.935
55 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.004 13.982 -28.583 31.961
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.156 4.156
3 C -0.167 4.167
4 C 0.083 3.917
5 H 0.073 0.927
6 C -0.171 4.171
7 C 0.303 3.697
8 O -0.458 6.458
9 N -0.345 5.345
10 C -0.014 4.014
11 C -0.168 4.168
12 C -0.093 4.093
13 C -0.146 4.146
14 C 0.025 3.975
15 N -0.394 5.394
16 C -0.375 4.375
17 H 0.096 0.904
18 C -0.273 4.273
19 N -0.623 5.623
20 Si 0.804 3.196
21 H -0.188 1.188
22 H -0.220 1.220
23 H -0.221 1.221
24 C -0.158 4.158
25 C -0.008 4.008
26 O -0.303 6.303
27 C -0.015 4.015
28 C -0.201 4.201
29 H 0.115 0.885
30 H 0.134 0.866
31 H 0.080 0.920
32 H 0.086 0.914
33 H 0.097 0.903
34 H 0.137 0.863
35 H 0.144 0.856
36 H 0.104 0.896
37 H 0.126 0.874
38 H 0.078 0.922
39 H 0.102 0.898
40 H 0.099 0.901
41 H 0.070 0.930
42 H 0.073 0.927
43 H 0.036 0.964
44 H 0.047 0.953
45 H 0.203 0.797
46 H 0.059 0.941
47 H 0.073 0.927
48 H 0.099 0.901
49 H 0.093 0.907
50 H 0.096 0.904
51 H 0.054 0.946
52 H 0.071 0.929
53 H 0.105 0.895
54 H 0.084 0.916
55 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -2.792 13.798 -28.965 32.205
hybrid contribution -0.381 -0.724 1.229 1.476
sum -3.174 13.074 -27.736 30.827
Atomic orbital electron populations
1.23922 0.94980 1.02877 0.99861 1.22256 0.95690 0.96266 1.01407
1.20730 1.00095 0.93417 1.02506 1.20780 0.90574 0.94121 0.86219
0.92679 1.21877 1.01906 0.94614 0.98667 1.20999 0.78106 0.89592
0.81037 1.90654 1.62793 1.54250 1.38086 1.48257 1.50001 1.16685
1.19534 1.22056 1.03275 0.91896 0.84157 1.22084 1.00108 0.96814
0.97765 1.21001 1.00671 0.95084 0.92524 1.21632 1.00500 0.98662
0.93846 1.20896 0.96702 0.95190 0.84686 1.42687 1.71276 1.23781
1.01627 1.19718 1.30196 1.02297 0.85324 0.90407 1.25625 1.02242
0.98005 1.01382 1.69837 1.48166 1.17936 1.26373 0.85041 0.76989
0.77933 0.79618 1.18772 1.22038 1.22105 1.21873 1.01528 0.98895
0.93542 1.21530 0.97566 0.83744 0.97933 1.87860 1.39220 1.83355
1.19889 1.22466 0.96981 0.96744 0.85313 1.21702 0.98655 1.02753
0.97012 0.88509 0.86558 0.92017 0.91439 0.90336 0.86305 0.85625
0.89641 0.87431 0.92177 0.89819 0.90135 0.93020 0.92721 0.96372
0.95306 0.79722 0.94060 0.92709 0.90101 0.90720 0.90354 0.94623
0.92938 0.89545 0.91635 0.93259
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.19 13.95 67.78 0.95 -1.24 16
2 C -0.16 -2.17 5.05 -16.48 -0.08 -2.25 16
3 C -0.11 -1.25 9.69 71.24 0.69 -0.56 16
4 C 0.14 2.55 1.78 29.85 0.05 2.61 16
5 H 0.06 1.15 7.25 -2.38 -0.02 1.13 16
6 C -0.13 -2.07 3.59 29.85 0.11 -1.96 16
7 C 0.51 11.54 7.58 87.66 0.66 12.20 16
8 O -0.58 -17.44 14.83 10.74 0.16 -17.28 16
9 N -0.61 -12.01 2.97 -818.18 -2.43 -14.44 16
10 C 0.11 1.60 6.37 86.51 0.55 2.15 16
11 C -0.13 -2.50 5.16 30.81 0.16 -2.35 16
12 C -0.07 -1.65 2.15 -10.77 -0.02 -1.67 16
13 C -0.11 -3.32 4.80 30.60 0.15 -3.18 16
14 C 0.15 5.81 6.02 86.38 0.52 6.33 16
15 N -0.75 -38.55 5.60 -343.46 -1.92 -40.47 16
16 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16
17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16
18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16
19 N -0.97 -60.18 13.06 21.65 0.28 -59.89 16
20 Si 0.98 46.11 29.55 68.60 2.03 48.14 16
21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16
22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16
23 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16
24 C -0.12 -2.53 5.36 30.66 0.16 -2.37 16
25 C 0.11 2.35 6.43 86.35 0.55 2.91 16
26 O -0.38 -8.24 9.01 -135.21 -1.22 -9.46 16
27 C 0.06 1.15 6.46 71.98 0.46 1.62 16
28 C -0.14 -2.22 10.28 71.98 0.74 -1.48 16
29 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16
30 H 0.12 1.08 8.05 -2.91 -0.02 1.06 16
31 H 0.06 0.77 7.50 -2.39 -0.02 0.75 16
32 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16
33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
34 H 0.12 1.50 7.45 -2.39 -0.02 1.48 16
35 H 0.13 1.48 7.70 -2.39 -0.02 1.46 16
36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
37 H 0.11 1.09 5.93 -2.39 -0.01 1.08 16
38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
39 H 0.08 1.67 6.50 -2.39 -0.02 1.65 16
40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
41 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16
42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16
43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
44 H 0.03 1.07 6.53 -2.39 -0.02 1.06 16
45 H 0.37 20.43 7.67 -92.71 -0.71 19.72 16
46 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16
47 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16
48 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
49 H 0.07 1.78 7.01 -2.39 -0.02 1.76 16
50 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
51 H 0.04 0.76 8.09 -2.39 -0.02 0.74 16
52 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
53 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16
54 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16
55 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16
Total: -1.00 -72.22 432.28 3.99 -68.24
By element:
Atomic # 1 Polarization: 31.31 SS G_CDS: 0.13 Total: 31.44 kcal
Atomic # 6 Polarization: -13.23 SS G_CDS: 6.96 Total: -6.27 kcal
Atomic # 7 Polarization: -110.74 SS G_CDS: -4.07 Total: -114.81 kcal
Atomic # 8 Polarization: -25.68 SS G_CDS: -1.06 Total: -26.74 kcal
Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal
Total: -72.22 3.99 -68.24 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714266462.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.063 kcal
(2) G-P(sol) polarization free energy of solvation -72.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.287 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.299 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds