Wall clock time and date at job start Tue Mar 31 2020 22:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42904 * 113.99867 * 2 1 4 4 C 1.53001 * 109.46982 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47004 * 175.70153 * 4 3 2 6 6 C 1.50694 * 110.43530 * 297.17532 * 5 4 3 7 7 O 1.21287 * 120.00227 * 121.64722 * 6 5 4 8 8 N 1.34781 * 119.99970 * 301.36652 * 6 5 4 9 9 C 1.46496 * 119.99833 * 175.26689 * 8 6 5 10 10 H 1.09002 * 109.47399 * 35.00046 * 9 8 6 11 11 C 1.53002 * 109.46886 * 155.00388 * 9 8 6 12 12 C 1.53008 * 109.46950 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47118 * 299.99915 * 12 11 9 14 14 H 1.09002 * 109.46879 * 300.00023 * 13 12 11 15 15 N 1.46500 * 109.46706 * 180.02562 * 13 12 11 16 16 C 1.36934 * 119.99658 * 155.00219 * 15 13 12 17 17 H 1.07998 * 120.00354 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99838 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00249 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00037 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47127 * 59.99951 * 20 18 16 22 22 H 1.48503 * 109.47418 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47242 * 299.99830 * 20 18 16 24 24 C 1.52997 * 109.47172 * 59.99872 * 13 12 11 25 25 C 1.52995 * 109.47351 * 300.00155 * 24 13 12 26 26 C 1.54894 * 110.59608 * 59.79260 * 5 4 3 27 27 C 1.54892 * 102.74603 * 156.67249 * 26 5 4 28 28 C 1.54261 * 104.19695 * 322.05922 * 27 26 5 29 29 C 1.53879 * 106.59958 * 23.60872 * 28 27 26 30 30 H 1.09010 * 109.46603 * 299.99773 * 1 2 3 31 31 H 1.09000 * 109.47508 * 59.99357 * 1 2 3 32 32 H 1.08996 * 109.46852 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47126 * 60.00285 * 3 2 1 34 34 H 1.09004 * 109.47162 * 300.00678 * 3 2 1 35 35 H 1.08999 * 109.46791 * 55.70716 * 4 3 2 36 36 H 1.09001 * 109.47332 * 295.70472 * 4 3 2 37 37 H 0.96993 * 119.99956 * 355.26783 * 8 6 5 38 38 H 1.09002 * 109.47048 * 299.99243 * 11 9 8 39 39 H 1.08993 * 109.47240 * 59.99838 * 11 9 8 40 40 H 1.08993 * 109.47179 * 59.99925 * 12 11 9 41 41 H 1.08998 * 109.46748 * 179.97438 * 12 11 9 42 42 H 0.96993 * 120.00018 * 334.98994 * 15 13 12 43 43 H 0.96998 * 120.00121 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.47095 * 60.00284 * 24 13 12 45 45 H 1.08997 * 109.46817 * 179.97438 * 24 13 12 46 46 H 1.09002 * 109.47126 * 300.00110 * 25 24 13 47 47 H 1.08999 * 109.47630 * 180.02562 * 25 24 13 48 48 H 1.09001 * 110.75577 * 274.98848 * 26 5 4 49 49 H 1.08998 * 110.75603 * 38.36082 * 26 5 4 50 50 H 1.08996 * 110.48710 * 203.37346 * 27 26 5 51 51 H 1.09001 * 110.48123 * 80.73835 * 27 26 5 52 52 H 1.09004 * 110.02942 * 264.32133 * 28 27 26 53 53 H 1.09006 * 110.03327 * 142.89312 * 28 27 26 54 54 H 1.08996 * 110.02692 * 240.71744 * 29 28 27 55 55 H 1.08996 * 110.02745 * 119.28735 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1574 2.5784 -0.1088 6 6 3.7741 3.2258 -1.4145 7 8 3.1870 4.2871 -1.4159 8 7 4.0888 2.6282 -2.5809 9 6 3.6266 3.2032 -3.8465 10 1 3.6236 4.2907 -3.7720 11 6 4.5650 2.7719 -4.9754 12 6 4.0819 3.3719 -6.2974 13 6 2.6651 2.8768 -6.5947 14 1 2.6684 1.7893 -6.6690 15 7 2.2029 3.4509 -7.8608 16 6 1.2402 2.8086 -8.5928 17 1 0.8220 1.8786 -8.2370 18 6 0.8019 3.3528 -9.7922 19 7 1.3111 4.4865 -10.2256 20 14 -0.5109 2.4762 -10.7911 21 1 -1.7487 2.3511 -9.9803 22 1 -0.8008 3.2567 -12.0208 23 1 -0.0263 1.1237 -11.1668 24 6 1.7268 3.3081 -5.4658 25 6 2.2098 2.7081 -4.1439 26 6 3.7203 3.4642 1.0844 27 6 4.8477 4.5241 1.1541 28 6 6.1311 3.7335 0.8262 29 6 5.6922 2.4964 0.0232 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8464 0.8901 34 1 1.6885 1.8465 -0.8900 35 1 3.8516 0.5790 -0.8499 36 1 3.8629 0.7115 0.9251 37 1 4.6212 1.8174 -2.5823 38 1 5.5744 3.1243 -4.7634 39 1 4.5679 1.6845 -5.0499 40 1 4.0787 4.4593 -6.2232 41 1 4.7507 3.0650 -7.1015 42 1 2.5786 4.2860 -8.1805 43 1 1.0046 4.8669 -11.0636 44 1 1.7235 4.3955 -5.3916 45 1 0.7173 2.9557 -5.6779 46 1 2.2131 1.6206 -4.2182 47 1 1.5410 3.0149 -3.3397 48 1 2.7585 3.9359 0.8833 49 1 3.6810 2.8810 2.0044 50 1 4.9081 4.9515 2.1550 51 1 4.6818 5.3066 0.4136 52 1 6.6251 3.4248 1.7475 53 1 6.8050 4.3471 0.2281 54 1 5.9732 1.5873 0.5549 55 1 6.1532 2.5096 -0.9644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714317219.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:43 Heat of formation + Delta-G solvation = -128.366345 kcal Electronic energy + Delta-G solvation = -31141.538461 eV Core-core repulsion = 27176.154393 eV Total energy + Delta-G solvation = -3965.384068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79498 -39.83172 -38.79606 -37.96380 -36.35791 -34.72999 -33.54279 -32.35191 -31.72093 -29.84977 -29.12429 -28.49565 -26.75595 -25.65295 -23.92188 -23.68883 -23.43055 -22.08061 -21.28301 -21.12000 -20.06772 -19.05461 -17.86607 -17.51683 -17.31144 -17.02518 -16.83899 -16.32656 -15.99563 -15.87747 -15.66986 -15.42019 -15.20591 -15.07671 -14.83150 -14.56824 -14.25528 -14.08336 -13.88136 -13.46277 -13.24371 -13.15707 -13.11059 -12.80831 -12.63133 -12.46321 -12.42664 -12.32090 -12.24376 -12.18893 -12.12063 -12.06245 -11.92801 -11.76621 -11.66487 -11.56786 -11.45072 -11.29352 -11.21153 -10.85857 -10.69870 -10.57061 -9.98848 -9.00652 -7.94068 -5.22416 1.45628 1.48682 1.54671 1.66343 2.16915 2.55982 2.70692 3.38377 3.45645 3.59332 3.69753 3.76086 3.84245 3.89115 4.05954 4.06565 4.19875 4.27821 4.34771 4.35680 4.38182 4.43612 4.46666 4.49566 4.51220 4.54930 4.57014 4.57232 4.63893 4.68815 4.80878 4.82842 4.85240 4.94842 4.97559 5.05072 5.06693 5.08180 5.09025 5.10683 5.18997 5.22824 5.25332 5.27846 5.37787 5.47271 5.51718 5.53074 5.56606 5.61999 6.14050 6.28517 6.61799 7.31649 7.33873 8.11379 8.34001 9.29474 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.002599 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.194563 B =10771.436199 C =12060.040709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.058 3.942 4 C -0.095 4.095 5 C -0.074 4.074 6 C 0.523 3.477 7 O -0.580 6.580 8 N -0.712 5.712 9 C 0.154 3.846 10 H 0.062 0.938 11 C -0.105 4.105 12 C -0.113 4.113 13 C 0.174 3.826 14 H 0.047 0.953 15 N -0.739 5.739 16 C -0.238 4.238 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.971 3.029 21 H -0.281 1.281 22 H -0.296 1.296 23 H -0.276 1.276 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.104 4.104 27 C -0.127 4.127 28 C -0.123 4.123 29 C -0.108 4.108 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.414 0.586 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.037 0.963 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.053 0.947 49 H 0.097 0.903 50 H 0.077 0.923 51 H 0.041 0.959 52 H 0.086 0.914 53 H 0.058 0.942 54 H 0.105 0.895 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.683 -9.212 28.465 31.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.019 4.019 4 C -0.133 4.133 5 C -0.078 4.078 6 C 0.311 3.689 7 O -0.459 6.459 8 N -0.363 5.363 9 C 0.049 3.951 10 H 0.080 0.920 11 C -0.143 4.143 12 C -0.152 4.152 13 C 0.065 3.935 14 H 0.065 0.935 15 N -0.378 5.378 16 C -0.370 4.370 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.800 3.200 21 H -0.207 1.207 22 H -0.222 1.222 23 H -0.201 1.201 24 C -0.163 4.163 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.165 4.165 28 C -0.161 4.161 29 C -0.145 4.145 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.251 0.749 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.116 0.884 50 H 0.096 0.904 51 H 0.060 0.940 52 H 0.105 0.895 53 H 0.077 0.923 54 H 0.123 0.877 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.259 -8.776 28.387 31.434 hybrid contribution -1.257 0.537 -1.328 1.906 sum 9.002 -8.239 27.059 29.683 Atomic orbital electron populations 1.22896 0.80001 1.03861 1.00317 1.87801 1.20916 1.28225 1.95503 1.22619 0.95132 0.84361 0.99788 1.21536 0.91923 0.94239 1.05568 1.21629 0.98760 0.95564 0.91818 1.20930 0.77487 0.84275 0.86238 1.90689 1.43242 1.23847 1.88097 1.45947 1.55239 1.30126 1.04968 1.20792 0.93297 0.97894 0.83148 0.91964 1.21644 0.98716 1.02185 0.91775 1.21637 0.95820 1.00228 0.97503 1.20469 0.92340 0.96227 0.84420 0.93479 1.42664 1.46433 1.26987 1.21747 1.19582 1.12929 1.03730 1.00717 0.90775 1.25553 1.03093 0.98550 0.99828 1.69814 1.47772 1.21565 1.23073 0.85250 0.79246 0.77744 0.77779 1.20689 1.22231 1.20149 1.22019 0.99613 0.99388 0.95270 1.21730 0.96249 1.00903 0.95896 1.22480 0.98589 0.96437 0.96625 1.22343 0.94958 0.97729 1.01452 1.22153 0.97055 0.96049 1.00803 1.22283 0.90060 1.00373 1.01821 0.93051 0.94717 0.88025 0.92531 0.95655 0.89702 0.87643 0.74941 0.89339 0.89468 0.93005 0.91396 0.79731 0.94102 0.94400 0.94227 0.90817 0.93859 0.92805 0.88436 0.90416 0.94012 0.89529 0.92315 0.87703 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -8.08 10.70 -148.98 -1.59 -9.67 16 3 C 0.06 1.06 5.50 71.98 0.40 1.45 16 4 C -0.10 -1.24 4.48 30.60 0.14 -1.10 16 5 C -0.07 -1.11 0.47 -51.85 -0.02 -1.14 16 6 C 0.52 11.88 5.10 87.65 0.45 12.33 16 7 O -0.58 -18.72 14.72 -3.05 -0.04 -18.76 16 8 N -0.71 -13.97 4.70 -442.52 -2.08 -16.05 16 9 C 0.15 3.91 2.50 44.99 0.11 4.03 16 10 H 0.06 1.95 7.51 -2.39 -0.02 1.94 16 11 C -0.10 -2.35 5.39 30.60 0.16 -2.19 16 12 C -0.11 -3.56 5.39 30.60 0.16 -3.39 16 13 C 0.17 6.84 2.77 44.99 0.12 6.97 16 14 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 15 N -0.74 -38.01 5.12 -322.95 -1.65 -39.66 16 16 C -0.24 -13.41 9.93 84.03 0.83 -12.58 16 17 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 19 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 20 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 C -0.12 -4.61 5.50 30.59 0.17 -4.44 16 25 C -0.11 -3.21 5.49 30.59 0.17 -3.05 16 26 C -0.10 -1.65 4.43 31.89 0.14 -1.50 16 27 C -0.13 -2.03 6.52 31.67 0.21 -1.82 16 28 C -0.12 -1.43 6.80 31.32 0.21 -1.21 16 29 C -0.11 -1.09 5.91 31.32 0.19 -0.91 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 0.97 7.39 -2.38 -0.02 0.95 16 34 H 0.03 0.59 7.22 -2.38 -0.02 0.57 16 35 H 0.08 1.00 7.61 -2.39 -0.02 0.98 16 36 H 0.11 0.97 8.07 -2.39 -0.02 0.95 16 37 H 0.41 5.42 7.92 -92.71 -0.73 4.68 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 42 H 0.37 20.59 7.80 -92.71 -0.72 19.86 16 43 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 48 H 0.05 1.14 7.37 -2.39 -0.02 1.12 16 49 H 0.10 1.08 8.06 -2.39 -0.02 1.06 16 50 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.04 0.93 7.64 -2.39 -0.02 0.91 16 52 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 54 H 0.10 0.56 7.79 -2.39 -0.02 0.54 16 55 H 0.07 0.72 7.48 -2.39 -0.02 0.70 16 Total: -1.00 -73.18 421.94 1.49 -71.70 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.60 Total: 34.87 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 5.15 Total: -11.00 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -3.45 Total: -116.05 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.64 Total: -28.44 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -73.18 1.49 -71.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714317219.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.670 kcal (2) G-P(sol) polarization free energy of solvation -73.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds