Wall clock time and date at job start Tue Mar 31 2020 22:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 114.00303 * 2 1 4 4 H 1.09000 * 109.46721 * 329.99825 * 3 2 1 5 5 C 1.52996 * 109.47146 * 89.99731 * 3 2 1 6 6 C 1.53003 * 109.47093 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47116 * 300.00326 * 6 5 3 8 8 C 1.53002 * 109.47170 * 59.99673 * 7 6 5 9 9 H 1.08999 * 109.46876 * 60.00396 * 8 7 6 10 10 C 1.53002 * 109.46877 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.47463 * 294.99775 * 10 8 7 12 12 O 1.21285 * 119.99578 * 0.02562 * 11 10 8 13 13 N 1.34776 * 119.99915 * 179.97438 * 11 10 8 14 14 C 1.46507 * 119.99656 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47108 * 175.47464 * 14 13 11 16 16 N 1.46507 * 110.43480 * 57.40011 * 15 14 13 17 17 C 1.36931 * 119.99896 * 61.59255 * 16 15 14 18 18 H 1.08002 * 119.99816 * 354.16576 * 17 16 15 19 19 C 1.38812 * 120.00046 * 174.15519 * 17 16 15 20 20 N 1.31617 * 119.99836 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00080 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47364 * 180.02562 * 21 19 17 23 23 H 1.48494 * 109.47769 * 300.00748 * 21 19 17 24 24 H 1.48503 * 109.47036 * 60.00777 * 21 19 17 25 25 C 1.54879 * 110.48929 * 179.97438 * 15 14 13 26 26 C 1.55238 * 102.59197 * 156.67401 * 25 15 14 27 27 C 1.54261 * 104.23092 * 322.09066 * 26 25 15 28 28 C 1.53874 * 106.59996 * 23.60434 * 27 26 25 29 29 C 1.52994 * 109.47246 * 300.00052 * 8 7 6 30 30 H 1.08996 * 109.47502 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47209 * 300.00280 * 1 2 3 32 32 H 1.09007 * 109.47376 * 59.99888 * 1 2 3 33 33 H 1.08996 * 109.47327 * 300.00415 * 5 3 2 34 34 H 1.09000 * 109.46816 * 60.00745 * 5 3 2 35 35 H 1.09000 * 109.46786 * 60.00086 * 6 5 3 36 36 H 1.08995 * 109.47015 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.47581 * 299.99785 * 7 6 5 38 38 H 1.09002 * 109.47235 * 179.97438 * 7 6 5 39 39 H 1.09006 * 109.46753 * 175.00300 * 10 8 7 40 40 H 1.08997 * 109.47079 * 55.00342 * 10 8 7 41 41 H 0.97000 * 120.00002 * 0.02562 * 13 11 10 42 42 H 1.08995 * 109.46931 * 55.47461 * 14 13 11 43 43 H 1.08996 * 109.46992 * 295.47298 * 14 13 11 44 44 H 0.97000 * 119.99772 * 241.60115 * 16 15 14 45 45 H 0.97000 * 119.99838 * 179.97438 * 20 19 17 46 46 H 1.08999 * 110.75962 * 275.07165 * 25 15 14 47 47 H 1.09002 * 110.75810 * 38.44005 * 25 15 14 48 48 H 1.08998 * 110.47079 * 203.39461 * 26 25 15 49 49 H 1.09003 * 110.57765 * 80.82938 * 26 25 15 50 50 H 1.09009 * 110.02951 * 264.32065 * 27 26 25 51 51 H 1.08999 * 110.07828 * 142.91627 * 27 26 25 52 52 H 1.08998 * 110.03416 * 240.71755 * 28 27 26 53 53 H 1.09007 * 110.03213 * 119.29083 * 28 27 26 54 54 H 1.09009 * 109.47087 * 179.97438 * 29 8 7 55 55 H 1.09000 * 109.47398 * 299.99432 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 2.8395 3.1694 1.4424 7 6 4.1880 3.1277 0.7210 8 6 3.9806 2.6617 -0.7215 9 1 3.3150 3.3554 -1.2352 10 6 5.3291 2.6207 -1.4431 11 6 5.8837 4.0178 -1.5513 12 8 5.2618 4.9540 -1.0957 13 7 7.0713 4.2266 -2.1535 14 6 7.6106 5.5847 -2.2582 15 6 9.0087 5.5318 -2.8774 16 7 8.9631 4.8805 -4.1889 17 6 8.2192 5.4281 -5.1997 18 1 7.5922 6.2857 -5.0052 19 6 8.2712 4.8811 -6.4745 20 7 9.0351 3.8359 -6.7114 21 14 7.2570 5.6286 -7.8536 22 1 7.4871 4.8658 -9.1068 23 1 5.8167 5.5703 -7.4967 24 1 7.6604 7.0437 -8.0538 25 6 9.6017 6.9574 -2.9998 26 6 11.1297 6.6861 -3.0393 27 6 11.3346 5.5252 -2.0443 28 6 9.9861 4.7913 -1.9413 29 6 3.3588 1.2638 -0.7214 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.2569 1.8015 1.9563 34 1 2.8830 1.0775 1.9562 35 1 2.1738 3.8630 0.9287 36 1 2.9876 3.5011 2.4701 37 1 4.8537 2.4341 1.2347 38 1 4.6308 4.1238 0.7206 39 1 5.1943 2.2050 -2.4417 40 1 6.0234 1.9967 -0.8804 41 1 7.5688 3.4777 -2.5176 42 1 7.6697 6.0297 -1.2650 43 1 6.9568 6.1877 -2.8883 44 1 9.4597 4.0613 -4.3411 45 1 9.0712 3.4534 -7.6021 46 1 9.2679 7.4369 -3.9199 47 1 9.3388 7.5610 -2.1311 48 1 11.6819 7.5682 -2.7154 49 1 11.4403 6.3892 -4.0411 50 1 11.6223 5.9164 -1.0684 51 1 12.1021 4.8458 -2.4150 52 1 9.6193 4.8262 -0.9155 53 1 10.0990 3.7559 -2.2629 54 1 3.2106 0.9320 -1.7492 55 1 4.0244 0.5701 -0.2078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714497772.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:50 Heat of formation + Delta-G solvation = -126.093589 kcal Electronic energy + Delta-G solvation = -30747.824993 eV Core-core repulsion = 26782.539479 eV Total energy + Delta-G solvation = -3965.285514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.12151 -40.14185 -39.39570 -37.44227 -35.46146 -35.04124 -33.43384 -32.30205 -31.07051 -29.83194 -29.50639 -27.99956 -27.30251 -25.90643 -24.86992 -23.34849 -22.60470 -21.52155 -20.88785 -20.73951 -20.08080 -18.92179 -17.93984 -17.50846 -17.13259 -16.70748 -16.43420 -16.28942 -16.06739 -16.02907 -15.82079 -15.44020 -15.18855 -15.03463 -14.66454 -14.44785 -14.05170 -13.97570 -13.83230 -13.57210 -13.20554 -13.08247 -13.00419 -12.86940 -12.70468 -12.44931 -12.35848 -12.34738 -12.25713 -11.94489 -11.93291 -11.90766 -11.73494 -11.57501 -11.49419 -11.39463 -11.35579 -11.28806 -11.16922 -10.89432 -10.54948 -10.36843 -9.81299 -8.93522 -7.89706 -5.14897 1.45652 1.46800 1.51678 1.80812 2.40323 2.57840 2.84555 3.41502 3.66804 3.75990 3.79444 3.85362 3.89722 3.98876 4.10409 4.12350 4.16064 4.24159 4.33789 4.46503 4.50453 4.51282 4.52970 4.57332 4.63377 4.67125 4.68413 4.70650 4.75720 4.83703 4.85400 4.87334 4.88942 5.00287 5.05862 5.07401 5.08579 5.15356 5.22478 5.23915 5.25031 5.26599 5.33999 5.41886 5.47453 5.50630 5.55676 5.63105 5.66037 5.74807 6.29352 6.33976 6.76882 7.41287 7.42936 8.15637 8.40430 9.32530 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.002754 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.898664 B =10164.180314 C =11745.216740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.088 3.912 4 H 0.058 0.942 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.060 4.060 9 H 0.057 0.943 10 C -0.131 4.131 11 C 0.504 3.496 12 O -0.584 6.584 13 N -0.704 5.704 14 C 0.128 3.872 15 C 0.183 3.817 16 N -0.709 5.709 17 C -0.213 4.213 18 H 0.062 0.938 19 C -0.064 4.064 20 N -0.961 5.961 21 Si 0.950 3.050 22 H -0.297 1.297 23 H -0.288 1.288 24 H -0.285 1.285 25 C -0.129 4.129 26 C -0.110 4.110 27 C -0.113 4.113 28 C -0.115 4.115 29 C -0.106 4.106 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.406 0.594 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.376 0.624 45 H 0.248 0.752 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.039 0.961 50 H 0.081 0.919 51 H 0.059 0.941 52 H 0.081 0.919 53 H 0.062 0.938 54 H 0.067 0.933 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 -5.175 17.992 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.031 3.969 4 H 0.076 0.924 5 C -0.170 4.170 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.079 4.079 9 H 0.076 0.924 10 C -0.171 4.171 11 C 0.292 3.708 12 O -0.466 6.466 13 N -0.353 5.353 14 C 0.002 3.998 15 C 0.092 3.908 16 N -0.350 5.350 17 C -0.345 4.345 18 H 0.080 0.920 19 C -0.257 4.257 20 N -0.612 5.612 21 Si 0.781 3.219 22 H -0.223 1.223 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.169 4.169 26 C -0.148 4.148 27 C -0.151 4.151 28 C -0.152 4.152 29 C -0.143 4.143 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.242 0.758 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.209 0.791 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.058 0.942 50 H 0.099 0.901 51 H 0.078 0.922 52 H 0.100 0.900 53 H 0.081 0.919 54 H 0.086 0.914 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.620 -4.570 18.196 20.646 hybrid contribution -0.419 0.213 -1.813 1.873 sum -9.039 -4.357 16.383 19.212 Atomic orbital electron populations 1.22941 0.80017 1.03665 1.00521 1.87865 1.20990 1.28432 1.95229 1.22154 0.94750 0.83996 0.96039 0.92409 1.21971 1.01521 0.97010 0.96479 1.21425 0.96360 0.96222 1.00853 1.21678 0.97703 1.01903 0.94227 1.20730 0.94630 0.96042 0.96472 0.92426 1.21730 0.98540 0.93006 1.03812 1.21170 0.80484 0.92255 0.76848 1.90604 1.59821 1.46050 1.50124 1.45846 1.21287 1.10258 1.57912 1.21628 0.95844 0.83506 0.98859 1.20857 0.91313 0.93074 0.85568 1.42441 1.56951 1.28325 1.07234 1.19180 1.16917 1.09513 0.88917 0.92032 1.25217 1.01775 0.99527 0.99156 1.69749 1.44424 1.25927 1.21081 0.85571 0.78684 0.77703 0.79941 1.22342 1.21502 1.21144 1.22891 0.96263 0.97160 1.00631 1.22202 0.95416 0.98469 0.98709 1.22041 0.96641 0.96830 0.99543 1.22312 0.94824 0.99122 0.98989 1.21576 0.95430 0.96420 1.00921 0.88487 0.93262 0.93769 0.91297 0.91082 0.92695 0.90848 0.91392 0.91988 0.88312 0.86610 0.75848 0.91593 0.95401 0.79058 0.94326 0.93697 0.90608 0.90819 0.94220 0.90050 0.92246 0.90033 0.91900 0.91424 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.41 -8.33 10.35 -148.98 -1.54 -9.87 16 3 C 0.09 1.71 2.61 30.59 0.08 1.79 16 4 H 0.06 1.12 7.79 -2.39 -0.02 1.11 16 5 C -0.13 -2.28 5.54 30.59 0.17 -2.11 16 6 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 7 C -0.12 -2.60 4.95 30.59 0.15 -2.45 16 8 C -0.06 -1.36 1.84 -10.79 -0.02 -1.38 16 9 H 0.06 1.56 7.95 -2.39 -0.02 1.54 16 10 C -0.13 -3.10 5.18 29.85 0.15 -2.95 16 11 C 0.50 16.04 7.55 87.66 0.66 16.70 16 12 O -0.58 -22.15 13.96 -3.05 -0.04 -22.20 16 13 N -0.70 -22.84 5.24 -463.06 -2.43 -25.27 16 14 C 0.13 4.52 4.33 86.38 0.37 4.89 16 15 C 0.18 6.35 0.52 4.67 0.00 6.35 16 16 N -0.71 -31.33 4.68 -298.51 -1.40 -32.73 16 17 C -0.21 -10.97 8.55 84.03 0.72 -10.25 16 18 H 0.06 3.23 7.12 -2.91 -0.02 3.21 16 19 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 20 N -0.96 -55.54 13.07 21.65 0.28 -55.25 16 21 Si 0.95 45.75 29.55 68.60 2.03 47.78 16 22 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 25 C -0.13 -4.36 5.91 32.00 0.19 -4.17 16 26 C -0.11 -3.35 6.80 31.79 0.22 -3.13 16 27 C -0.11 -2.92 6.80 31.32 0.21 -2.71 16 28 C -0.11 -3.19 5.71 31.32 0.18 -3.02 16 29 C -0.11 -2.11 4.86 30.59 0.15 -1.96 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.60 7.87 -2.39 -0.02 0.58 16 32 H 0.04 0.60 8.09 -2.38 -0.02 0.58 16 33 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.72 5.95 -2.39 -0.01 1.70 16 39 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.41 12.69 8.06 -92.71 -0.75 11.95 16 42 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 43 H 0.03 1.16 7.42 -2.39 -0.02 1.15 16 44 H 0.38 17.92 7.48 -92.71 -0.69 17.23 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 46 H 0.04 1.77 7.23 -2.39 -0.02 1.76 16 47 H 0.08 2.19 8.06 -2.39 -0.02 2.17 16 48 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 51 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.08 1.97 7.79 -2.39 -0.02 1.96 16 53 H 0.06 1.80 7.74 -2.38 -0.02 1.78 16 54 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 55 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -63.44 420.22 1.43 -62.01 By element: Atomic # 1 Polarization: 43.88 SS G_CDS: -0.58 Total: 43.30 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 5.11 Total: -7.77 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -3.54 Total: -113.25 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.58 Total: -32.07 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -63.44 1.43 -62.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714497772.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.082 kcal (2) G-P(sol) polarization free energy of solvation -63.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds