Wall clock time and date at job start Tue Mar 31 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99525 * 2 1 4 4 H 1.08997 * 109.47287 * 330.00378 * 3 2 1 5 5 C 1.53000 * 109.46771 * 90.00391 * 3 2 1 6 6 C 1.52995 * 109.47469 * 59.99715 * 5 3 2 7 7 C 1.53003 * 109.46989 * 59.99845 * 6 5 3 8 8 C 1.52996 * 109.47005 * 299.99834 * 7 6 5 9 9 H 1.08995 * 109.47751 * 300.00275 * 8 7 6 10 10 C 1.53003 * 109.47005 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.46996 * 65.00308 * 10 8 7 12 12 O 1.21276 * 120.00169 * 359.97438 * 11 10 8 13 13 N 1.34781 * 119.99589 * 180.02562 * 11 10 8 14 14 C 1.46495 * 119.99664 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47316 * 175.14075 * 14 13 11 16 16 N 1.46498 * 110.43326 * 57.40783 * 15 14 13 17 17 C 1.36937 * 119.99918 * 61.98881 * 16 15 14 18 18 H 1.08005 * 120.00056 * 353.85144 * 17 16 15 19 19 C 1.38810 * 120.00152 * 173.84623 * 17 16 15 20 20 N 1.31625 * 119.99881 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46855 * 60.00635 * 21 19 17 23 23 H 1.48500 * 109.47472 * 300.00325 * 21 19 17 24 24 H 1.48502 * 109.47102 * 180.02562 * 21 19 17 25 25 C 1.54890 * 110.60021 * 180.02562 * 15 14 13 26 26 C 1.54899 * 102.74552 * 156.67700 * 25 15 14 27 27 C 1.54267 * 104.19492 * 322.05723 * 26 25 15 28 28 C 1.53872 * 106.59857 * 23.61014 * 27 26 25 29 29 C 1.52998 * 109.46671 * 210.00181 * 3 2 1 30 30 H 1.09000 * 109.47358 * 299.99633 * 1 2 3 31 31 H 1.09001 * 109.47456 * 59.99796 * 1 2 3 32 32 H 1.09006 * 109.46715 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46810 * 179.97438 * 5 3 2 34 34 H 1.09006 * 109.47056 * 299.99497 * 5 3 2 35 35 H 1.08997 * 109.47560 * 179.97438 * 6 5 3 36 36 H 1.08997 * 109.47241 * 299.99903 * 6 5 3 37 37 H 1.08997 * 109.47302 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47082 * 59.99961 * 7 6 5 39 39 H 1.09002 * 109.47293 * 304.99902 * 10 8 7 40 40 H 1.08998 * 109.47051 * 185.00283 * 10 8 7 41 41 H 0.96995 * 120.00110 * 359.97438 * 13 11 10 42 42 H 1.09010 * 109.47218 * 55.14257 * 14 13 11 43 43 H 1.08997 * 109.47512 * 295.14390 * 14 13 11 44 44 H 0.96997 * 120.00175 * 241.98766 * 16 15 14 45 45 H 0.96998 * 119.99737 * 359.97438 * 20 19 17 46 46 H 1.08991 * 110.75802 * 274.99216 * 25 15 14 47 47 H 1.09006 * 110.75658 * 38.36813 * 25 15 14 48 48 H 1.08997 * 110.48153 * 203.38194 * 26 25 15 49 49 H 1.08993 * 110.59901 * 80.79928 * 26 25 15 50 50 H 1.09000 * 110.03120 * 264.32607 * 27 26 25 51 51 H 1.09002 * 110.06830 * 142.91820 * 27 26 25 52 52 H 1.08994 * 110.03210 * 240.71151 * 28 27 26 53 53 H 1.09010 * 110.07113 * 119.30420 * 28 27 26 54 54 H 1.09007 * 109.46809 * 180.02562 * 29 3 2 55 55 H 1.08997 * 109.47190 * 60.00578 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9995 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.1515 0.7974 2.1637 7 6 4.5001 0.7553 1.4424 8 6 4.2927 0.2894 0.0000 9 1 3.8494 -0.7063 -0.0001 10 6 5.6413 0.2479 -0.7215 11 6 6.5187 -0.7999 -0.0864 12 8 6.1062 -1.4492 0.8512 13 7 7.7622 -1.0147 -0.5598 14 6 8.6153 -2.0329 0.0579 15 6 9.9164 -2.1590 -0.7372 16 7 10.6026 -0.8664 -0.8034 17 6 11.0316 -0.2593 0.3466 18 1 10.7779 -0.6822 1.3075 19 6 11.7926 0.8996 0.2775 20 7 12.1014 1.4152 -0.8935 21 14 12.3771 1.7282 1.8464 22 1 13.2281 0.7857 2.6163 23 1 11.2028 2.1186 2.6672 24 1 13.1649 2.9392 1.5026 25 6 10.8391 -3.2309 -0.1060 26 6 11.7411 -3.6480 -1.2942 27 6 10.7924 -3.6394 -2.5106 28 6 9.6322 -2.6927 -2.1564 29 6 3.3588 1.2634 -0.7213 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6613 2.7670 1.4425 34 1 1.2568 1.8014 1.9564 35 1 3.2996 1.1295 3.1913 36 1 2.7082 -0.1983 2.1637 37 1 5.1653 0.0611 1.9559 38 1 4.9434 1.7511 1.4424 39 1 6.1246 1.2219 -0.6446 40 1 5.4840 0.0022 -1.7717 41 1 8.0922 -0.4952 -1.3095 42 1 8.0955 -2.9911 0.0583 43 1 8.8430 -1.7428 1.0835 44 1 10.7531 -0.4406 -1.6618 45 1 11.7975 0.9851 -1.7081 46 1 11.4351 -2.8018 0.6994 47 1 10.2564 -4.0794 0.2530 48 1 12.1461 -4.6471 -1.1333 49 1 12.5477 -2.9285 -1.4343 50 1 10.4117 -4.6441 -2.6942 51 1 11.3179 -3.2725 -3.3922 52 1 8.6885 -3.2379 -2.1683 53 1 9.5943 -1.8658 -2.8657 54 1 3.8023 2.2591 -0.7209 55 1 3.2110 0.9315 -1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714497773.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:55 Heat of formation + Delta-G solvation = -124.411428 kcal Electronic energy + Delta-G solvation = -31070.693539 eV Core-core repulsion = 27105.480969 eV Total energy + Delta-G solvation = -3965.212570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.18030 -40.25242 -39.48264 -37.09921 -35.69899 -35.25419 -33.39808 -32.18717 -31.16381 -29.74747 -29.60815 -28.00110 -27.28234 -25.84537 -24.92886 -23.46922 -22.64318 -21.58820 -20.89993 -20.54492 -20.37663 -18.99636 -18.00608 -17.39836 -17.11312 -16.75966 -16.52001 -16.36811 -16.27268 -16.03892 -15.81011 -15.65067 -15.35685 -14.88343 -14.69506 -14.36304 -14.23371 -14.06413 -13.64219 -13.45174 -13.32201 -13.02579 -12.96601 -12.73267 -12.69614 -12.54461 -12.35578 -12.27906 -12.14561 -12.04924 -11.92435 -11.89091 -11.83535 -11.62946 -11.45249 -11.30938 -11.23524 -11.17983 -11.05879 -10.88148 -10.48705 -10.33259 -9.88791 -9.03660 -8.27975 -5.22397 1.57183 1.64030 1.76297 1.80402 2.39652 2.71305 2.96090 3.43348 3.64487 3.70795 3.71703 3.78265 3.83870 3.90188 4.00989 4.04635 4.19201 4.29132 4.36828 4.42283 4.47321 4.53042 4.55300 4.57819 4.58345 4.61128 4.70453 4.72293 4.74781 4.79710 4.82429 4.86241 4.86996 4.93208 4.97772 4.98452 5.04916 5.07183 5.13152 5.15197 5.28285 5.32332 5.33427 5.37330 5.40214 5.47396 5.56807 5.62982 5.67557 5.73472 6.39794 6.61241 6.70510 7.18257 7.38124 8.07814 8.19205 9.23642 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.002899 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.136731 B = 9657.471153 C =11112.380021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.087 3.913 4 H 0.081 0.919 5 C -0.137 4.137 6 C -0.107 4.107 7 C -0.119 4.119 8 C -0.055 4.055 9 H 0.059 0.941 10 C -0.132 4.132 11 C 0.502 3.498 12 O -0.585 6.585 13 N -0.704 5.704 14 C 0.130 3.870 15 C 0.188 3.812 16 N -0.721 5.721 17 C -0.301 4.301 18 H 0.052 0.948 19 C -0.096 4.096 20 N -0.976 5.976 21 Si 1.111 2.889 22 H -0.285 1.285 23 H -0.288 1.288 24 H -0.294 1.294 25 C -0.129 4.129 26 C -0.109 4.109 27 C -0.113 4.113 28 C -0.116 4.116 29 C -0.109 4.109 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.405 0.595 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.363 0.637 45 H 0.247 0.753 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.038 0.962 50 H 0.082 0.918 51 H 0.061 0.939 52 H 0.080 0.920 53 H 0.062 0.938 54 H 0.091 0.909 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.184 -2.954 -3.489 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.030 3.970 4 H 0.099 0.901 5 C -0.174 4.174 6 C -0.145 4.145 7 C -0.157 4.157 8 C -0.074 4.074 9 H 0.077 0.923 10 C -0.172 4.172 11 C 0.290 3.710 12 O -0.466 6.466 13 N -0.354 5.354 14 C 0.003 3.997 15 C 0.097 3.903 16 N -0.363 5.363 17 C -0.433 4.433 18 H 0.070 0.930 19 C -0.288 4.288 20 N -0.625 5.625 21 Si 0.939 3.061 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.220 1.220 25 C -0.169 4.169 26 C -0.147 4.147 27 C -0.150 4.150 28 C -0.154 4.154 29 C -0.146 4.146 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.240 0.760 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.196 0.804 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.057 0.943 50 H 0.101 0.899 51 H 0.080 0.920 52 H 0.099 0.901 53 H 0.081 0.919 54 H 0.109 0.891 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.524 -2.400 -2.009 19.773 hybrid contribution -0.329 -0.705 -0.703 1.048 sum -19.853 -3.105 -2.712 20.277 Atomic orbital electron populations 1.22909 0.80392 1.03212 1.00610 1.87961 1.20604 1.28673 1.95122 1.22212 0.94790 0.84535 0.95463 0.90147 1.22025 0.99850 0.99414 0.96143 1.21316 0.95073 0.99610 0.98483 1.21646 0.97528 1.00415 0.96066 1.20664 0.92808 0.99765 0.94212 0.92290 1.21803 0.95469 0.98062 1.01837 1.21318 0.82176 0.84322 0.83165 1.90612 1.74599 1.51242 1.30177 1.45829 1.13977 1.39490 1.36099 1.21583 0.91457 0.90518 0.96142 1.20776 0.89317 0.85835 0.94342 1.42433 1.69233 1.19688 1.04962 1.19974 1.28141 1.07886 0.87269 0.93008 1.26625 0.99300 0.97712 1.05207 1.70982 1.50844 1.43226 0.97400 0.82789 0.75985 0.75379 0.71902 1.21184 1.21474 1.21977 1.22815 0.98186 0.97844 0.98068 1.22140 0.97462 1.00313 0.94783 1.22051 0.95644 0.99857 0.97485 1.22330 0.99351 0.99107 0.94593 1.21729 0.93438 1.00229 0.99196 0.93581 0.92912 0.89511 0.89972 0.91247 0.92425 0.93228 0.93531 0.92317 0.88130 0.86756 0.76021 0.91895 0.95682 0.80423 0.94199 0.93834 0.90701 0.90621 0.94328 0.89908 0.92033 0.90112 0.91877 0.89070 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.40 -8.50 9.00 -148.98 -1.34 -9.84 16 3 C 0.09 1.51 2.92 30.59 0.09 1.60 16 4 H 0.08 1.04 7.79 -2.39 -0.02 1.02 16 5 C -0.14 -2.41 5.63 30.59 0.17 -2.24 16 6 C -0.11 -2.55 5.78 30.59 0.18 -2.37 16 7 C -0.12 -3.28 4.95 30.59 0.15 -3.13 16 8 C -0.06 -1.39 1.69 -10.79 -0.02 -1.40 16 9 H 0.06 1.80 7.50 -2.39 -0.02 1.78 16 10 C -0.13 -3.31 5.17 29.85 0.15 -3.15 16 11 C 0.50 17.12 7.55 87.66 0.66 17.78 16 12 O -0.59 -24.10 13.96 -3.02 -0.04 -24.14 16 13 N -0.70 -24.15 5.24 -463.06 -2.43 -26.57 16 14 C 0.13 4.85 4.35 86.38 0.38 5.22 16 15 C 0.19 6.80 0.52 4.68 0.00 6.80 16 16 N -0.72 -32.35 4.67 -298.50 -1.39 -33.74 16 17 C -0.30 -15.85 8.55 84.03 0.72 -15.13 16 18 H 0.05 2.83 7.13 -2.91 -0.02 2.81 16 19 C -0.10 -5.37 5.50 84.86 0.47 -4.91 16 20 N -0.98 -58.17 13.70 21.65 0.30 -57.87 16 21 Si 1.11 52.31 29.92 68.60 2.05 54.37 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 25 C -0.13 -4.54 5.88 31.89 0.19 -4.35 16 26 C -0.11 -3.40 6.79 31.67 0.22 -3.19 16 27 C -0.11 -2.98 6.80 31.32 0.21 -2.76 16 28 C -0.12 -3.34 5.72 31.32 0.18 -3.16 16 29 C -0.11 -1.96 4.94 30.60 0.15 -1.81 16 30 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16 31 H 0.05 0.58 8.09 -2.39 -0.02 0.56 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.08 7.87 -2.38 -0.02 1.06 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.35 7.68 -2.39 -0.02 1.33 16 37 H 0.05 1.64 5.95 -2.39 -0.01 1.62 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.40 13.15 8.06 -92.71 -0.75 12.40 16 42 H 0.06 2.23 8.08 -2.38 -0.02 2.21 16 43 H 0.02 1.11 7.44 -2.39 -0.02 1.09 16 44 H 0.36 16.98 6.33 -92.71 -0.59 16.40 16 45 H 0.25 14.45 6.79 -92.71 -0.63 13.82 16 46 H 0.04 1.80 7.22 -2.39 -0.02 1.78 16 47 H 0.07 2.29 8.06 -2.38 -0.02 2.27 16 48 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.08 2.07 7.79 -2.39 -0.02 2.05 16 53 H 0.06 1.82 7.74 -2.38 -0.02 1.80 16 54 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 55 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -68.57 416.45 1.93 -66.64 By element: Atomic # 1 Polarization: 46.13 SS G_CDS: -0.33 Total: 45.79 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 5.12 Total: -14.63 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -3.52 Total: -118.18 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.38 Total: -33.98 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.37 kcal Total: -68.57 1.93 -66.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714497773.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.776 kcal (2) G-P(sol) polarization free energy of solvation -68.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds