Wall clock time and date at job start Tue Mar 31 2020 22:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99683 * 2 1 4 4 H 1.08997 * 109.47315 * 29.99704 * 3 2 1 5 5 C 1.53004 * 109.46784 * 269.99844 * 3 2 1 6 6 C 1.53002 * 109.47218 * 300.00080 * 5 3 2 7 7 C 1.53006 * 109.46955 * 300.00111 * 6 5 3 8 8 C 1.52998 * 109.46856 * 60.00196 * 7 6 5 9 9 H 1.09005 * 109.47774 * 60.00005 * 8 7 6 10 10 C 1.53004 * 109.47120 * 179.97438 * 8 7 6 11 11 C 1.50698 * 109.47402 * 295.00145 * 10 8 7 12 12 O 1.21285 * 119.99696 * 359.71862 * 11 10 8 13 13 N 1.34776 * 120.00018 * 179.97438 * 11 10 8 14 14 C 1.46497 * 119.99597 * 179.72230 * 13 11 10 15 15 C 1.53006 * 109.46815 * 175.52988 * 14 13 11 16 16 N 1.46496 * 110.01541 * 55.27465 * 15 14 13 17 17 C 1.36936 * 120.00023 * 61.55037 * 16 15 14 18 18 H 1.07998 * 120.00411 * 354.37562 * 17 16 15 19 19 C 1.38816 * 119.99870 * 174.37500 * 17 16 15 20 20 N 1.31619 * 119.99855 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00033 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47120 * 90.00265 * 21 19 17 23 23 H 1.48498 * 109.47189 * 210.00204 * 21 19 17 24 24 H 1.48502 * 109.47064 * 330.00206 * 21 19 17 25 25 C 1.54264 * 110.03179 * 293.87933 * 15 14 13 26 26 C 1.54960 * 104.16151 * 217.13693 * 25 15 14 27 27 C 1.54892 * 102.77753 * 37.88890 * 26 25 15 28 28 C 1.53876 * 110.02818 * 176.66268 * 15 14 13 29 29 C 1.52997 * 109.47364 * 299.99389 * 8 7 6 30 30 H 1.09008 * 109.47460 * 300.00308 * 1 2 3 31 31 H 1.09002 * 109.46836 * 60.00094 * 1 2 3 32 32 H 1.08998 * 109.47064 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46770 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.47445 * 60.00339 * 5 3 2 35 35 H 1.08997 * 109.47132 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.47310 * 60.00018 * 6 5 3 37 37 H 1.08999 * 109.47036 * 300.00075 * 7 6 5 38 38 H 1.09005 * 109.46813 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47537 * 174.99508 * 10 8 7 40 40 H 1.09004 * 109.46514 * 55.00155 * 10 8 7 41 41 H 0.97000 * 120.00168 * 359.72954 * 13 11 10 42 42 H 1.08997 * 109.47536 * 295.52591 * 14 13 11 43 43 H 1.09004 * 109.47551 * 55.53343 * 14 13 11 44 44 H 0.96998 * 119.99781 * 241.54768 * 16 15 14 45 45 H 0.97006 * 119.99727 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.49076 * 335.78789 * 25 15 14 47 47 H 1.08997 * 110.48353 * 98.42621 * 25 15 14 48 48 H 1.09003 * 110.71878 * 279.57710 * 26 25 15 49 49 H 1.08999 * 110.76536 * 156.22593 * 26 25 15 50 50 H 1.08997 * 110.48671 * 203.40536 * 27 26 25 51 51 H 1.09001 * 110.48418 * 80.76044 * 27 26 25 52 52 H 1.09001 * 110.03391 * 238.56387 * 28 15 14 53 53 H 1.08995 * 110.03720 * 359.95412 * 28 15 14 54 54 H 1.09001 * 109.47716 * 180.02562 * 29 8 7 55 55 H 1.08999 * 109.47443 * 300.00682 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4426 6 6 3.1515 0.7973 -2.1638 7 6 4.5002 0.7552 -1.4425 8 6 4.2927 0.2893 0.0000 9 1 3.8494 -0.7065 0.0001 10 6 5.6414 0.2466 0.7212 11 6 6.5179 -0.8018 0.0858 12 8 6.1026 -1.4544 -0.8484 13 7 7.7613 -1.0177 0.5589 14 6 8.6110 -2.0411 -0.0550 15 6 9.9978 -2.0067 0.5905 16 7 9.8788 -2.1576 2.0428 17 6 9.3344 -3.2980 2.5704 18 1 8.9101 -4.0462 1.9172 19 6 9.3277 -3.4924 3.9448 20 7 9.8452 -2.5809 4.7409 21 14 8.5844 -5.0477 4.6646 22 1 9.6330 -6.0938 4.7717 23 1 8.0365 -4.7561 6.0136 24 1 7.4929 -5.5296 3.7805 25 6 10.7048 -0.6777 0.2534 26 6 12.1896 -1.0767 0.0599 27 6 12.0858 -2.4471 -0.6545 28 6 10.8755 -3.1314 0.0139 29 6 3.3589 1.2633 0.7213 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.6613 2.7670 -1.4426 34 1 1.2568 1.8014 -1.9564 35 1 3.2996 1.1295 -3.1913 36 1 2.7082 -0.1985 -2.1637 37 1 4.9434 1.7510 -1.4425 38 1 5.1653 0.0610 -1.9561 39 1 5.4843 0.0010 1.7715 40 1 6.1255 1.2202 0.6442 41 1 8.0935 -0.4955 1.3058 42 1 8.1639 -3.0235 0.0967 43 1 8.7025 -1.8445 -1.1232 44 1 10.1856 -1.4498 2.6307 45 1 9.8402 -2.7166 5.7014 46 1 10.3011 -0.2532 -0.6658 47 1 10.6030 0.0283 1.0776 48 1 12.6899 -1.1799 1.0228 49 1 12.7059 -0.3513 -0.5690 50 1 12.9917 -3.0312 -0.4927 51 1 11.9052 -2.3089 -1.7205 52 1 11.2137 -3.7890 0.8147 53 1 10.3133 -3.7022 -0.7251 54 1 3.2114 0.9317 1.7491 55 1 3.8022 2.2591 0.7212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714497774.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:00 Heat of formation + Delta-G solvation = -123.684541 kcal Electronic energy + Delta-G solvation = -31025.603894 eV Core-core repulsion = 27060.422845 eV Total energy + Delta-G solvation = -3965.181050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.13192 -40.20759 -39.40774 -37.07812 -35.51980 -35.03161 -33.35272 -32.36668 -31.13947 -29.75076 -29.58840 -27.97282 -27.29785 -25.89576 -24.73979 -23.43223 -22.59133 -21.63825 -20.94706 -20.49545 -20.01588 -18.99580 -17.89837 -17.38593 -16.99587 -16.75695 -16.54800 -16.33026 -16.12272 -15.89665 -15.82260 -15.52983 -15.04687 -14.95233 -14.51377 -14.38760 -14.12167 -13.99336 -13.53994 -13.41993 -13.29673 -13.22290 -12.96656 -12.88971 -12.69726 -12.62493 -12.48181 -12.29242 -12.13483 -12.04351 -11.86461 -11.83351 -11.79238 -11.53974 -11.41783 -11.40624 -11.31363 -11.18347 -11.14642 -10.91132 -10.44754 -10.32047 -9.81356 -8.95212 -7.91342 -5.16687 1.43524 1.45943 1.52095 1.81771 2.46322 2.57625 2.97391 3.39731 3.74052 3.76337 3.79628 3.86503 3.90569 3.96596 4.06513 4.17300 4.22296 4.33327 4.41980 4.45036 4.49691 4.56559 4.57399 4.59240 4.65258 4.69384 4.72092 4.74926 4.80050 4.84563 4.87218 4.89117 4.91779 4.98794 5.00744 5.03066 5.10190 5.16181 5.20379 5.27956 5.32220 5.36513 5.40860 5.41962 5.46578 5.53111 5.61211 5.66854 5.68021 5.76142 6.33043 6.41198 6.78118 7.40148 7.44605 8.13875 8.39324 9.30995 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.002999 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.738798 B = 9332.822302 C =11038.243029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.084 3.916 4 H 0.079 0.921 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.113 4.113 8 C -0.059 4.059 9 H 0.046 0.954 10 C -0.132 4.132 11 C 0.502 3.498 12 O -0.587 6.587 13 N -0.703 5.703 14 C 0.128 3.872 15 C 0.184 3.816 16 N -0.714 5.714 17 C -0.214 4.214 18 H 0.059 0.941 19 C -0.062 4.062 20 N -0.959 5.959 21 Si 0.949 3.051 22 H -0.291 1.291 23 H -0.296 1.296 24 H -0.283 1.283 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.113 4.113 28 C -0.132 4.132 29 C -0.109 4.109 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.406 0.594 42 H 0.023 0.977 43 H 0.063 0.937 44 H 0.376 0.624 45 H 0.248 0.752 46 H 0.083 0.917 47 H 0.066 0.934 48 H 0.051 0.949 49 H 0.086 0.914 50 H 0.063 0.937 51 H 0.078 0.922 52 H 0.048 0.952 53 H 0.054 0.946 54 H 0.065 0.935 55 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 14.107 -12.177 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.027 3.973 4 H 0.097 0.903 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.151 4.151 8 C -0.078 4.078 9 H 0.064 0.936 10 C -0.172 4.172 11 C 0.290 3.710 12 O -0.469 6.469 13 N -0.353 5.353 14 C 0.002 3.998 15 C 0.094 3.906 16 N -0.354 5.354 17 C -0.347 4.347 18 H 0.077 0.923 19 C -0.255 4.255 20 N -0.610 5.610 21 Si 0.781 3.219 22 H -0.218 1.218 23 H -0.222 1.222 24 H -0.209 1.209 25 C -0.151 4.151 26 C -0.153 4.153 27 C -0.151 4.151 28 C -0.172 4.172 29 C -0.147 4.147 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.242 0.758 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.210 0.790 45 H 0.058 0.942 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.105 0.895 50 H 0.082 0.918 51 H 0.097 0.903 52 H 0.067 0.933 53 H 0.072 0.928 54 H 0.084 0.916 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.816 13.301 -12.804 21.397 hybrid contribution -0.348 -1.095 1.402 1.813 sum -11.164 12.206 -11.401 20.090 Atomic orbital electron populations 1.22894 0.80462 1.03066 1.00646 1.87978 1.20580 1.29044 1.95155 1.22272 0.94739 0.84338 0.95960 0.90337 1.22013 0.99931 0.99678 0.95568 1.21340 0.95326 0.99255 0.98772 1.21614 0.97445 1.00978 0.95015 1.20679 0.92824 0.99263 0.95038 0.93586 1.21790 0.95642 0.98780 1.00942 1.21283 0.82020 0.84595 0.83084 1.90610 1.73910 1.51329 1.31021 1.45849 1.14633 1.38704 1.36076 1.21703 0.92026 0.90093 0.95998 1.20696 0.91115 0.94994 0.83817 1.42583 1.73187 1.19075 1.00559 1.19207 1.28172 0.97368 0.89925 0.92254 1.25209 1.03187 1.00324 0.96806 1.69754 1.52745 1.35824 1.02707 0.85501 0.77955 0.80962 0.77512 1.21820 1.22238 1.20917 1.22532 0.95745 0.95259 1.01610 1.22417 0.95784 0.96951 1.00107 1.22290 0.97010 0.96180 0.99610 1.22613 0.97153 0.98332 0.99096 1.21733 0.93628 1.00553 0.98738 0.93063 0.93239 0.89854 0.89279 0.91463 0.91768 0.93993 0.90984 0.93052 0.88658 0.86317 0.75810 0.95812 0.91835 0.79011 0.94246 0.89877 0.91570 0.93048 0.89538 0.91831 0.90286 0.93329 0.92764 0.91579 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 113.37 1.23 1.64 16 2 O -0.41 -9.49 9.00 -148.98 -1.34 -10.83 16 3 C 0.08 1.51 2.92 30.60 0.09 1.60 16 4 H 0.08 1.07 7.79 -2.39 -0.02 1.05 16 5 C -0.13 -2.18 5.63 30.60 0.17 -2.01 16 6 C -0.11 -2.38 5.78 30.60 0.18 -2.21 16 7 C -0.11 -2.75 4.95 30.60 0.15 -2.60 16 8 C -0.06 -1.50 1.69 -10.79 -0.02 -1.52 16 9 H 0.05 1.54 7.49 -2.38 -0.02 1.52 16 10 C -0.13 -3.36 5.18 29.85 0.15 -3.20 16 11 C 0.50 17.22 7.54 87.66 0.66 17.88 16 12 O -0.59 -24.25 13.97 -3.05 -0.04 -24.30 16 13 N -0.70 -24.20 5.23 -463.05 -2.42 -26.62 16 14 C 0.13 4.77 4.04 86.38 0.35 5.12 16 15 C 0.18 6.63 0.68 4.33 0.00 6.64 16 16 N -0.71 -32.24 4.53 -300.07 -1.36 -33.60 16 17 C -0.21 -11.28 8.52 84.03 0.72 -10.57 16 18 H 0.06 3.21 7.27 -2.91 -0.02 3.19 16 19 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 20 N -0.96 -55.74 13.07 21.65 0.28 -55.46 16 21 Si 0.95 46.41 29.55 68.60 2.03 48.43 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 25 C -0.11 -3.24 5.72 31.69 0.18 -3.06 16 26 C -0.12 -3.04 6.91 31.91 0.22 -2.81 16 27 C -0.11 -3.07 6.83 31.67 0.22 -2.85 16 28 C -0.13 -4.62 5.93 31.32 0.19 -4.43 16 29 C -0.11 -2.06 4.95 30.59 0.15 -1.90 16 30 H 0.05 0.67 8.09 -2.38 -0.02 0.65 16 31 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 0.98 7.87 -2.39 -0.02 0.96 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.13 7.68 -2.39 -0.02 1.11 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.59 5.96 -2.38 -0.01 1.58 16 39 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.41 13.39 7.99 -92.71 -0.74 12.65 16 42 H 0.02 1.04 7.46 -2.39 -0.02 1.03 16 43 H 0.06 2.22 8.05 -2.38 -0.02 2.20 16 44 H 0.38 18.13 7.44 -92.71 -0.69 17.44 16 45 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 46 H 0.08 2.08 7.79 -2.39 -0.02 2.06 16 47 H 0.07 1.91 7.72 -2.39 -0.02 1.90 16 48 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 52 H 0.05 2.02 7.36 -2.39 -0.02 2.00 16 53 H 0.05 1.83 7.67 -2.39 -0.02 1.81 16 54 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 55 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -67.32 417.75 1.68 -65.64 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -0.57 Total: 44.01 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.10 Total: -7.29 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -3.50 Total: -115.68 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.38 Total: -35.12 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -67.32 1.68 -65.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714497774.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.041 kcal (2) G-P(sol) polarization free energy of solvation -67.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds