Wall clock time and date at job start Tue Mar 31 2020 22:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99872 * 2 1 4 4 H 1.08994 * 109.47366 * 30.00005 * 3 2 1 5 5 C 1.52997 * 109.47250 * 269.99527 * 3 2 1 6 6 C 1.52995 * 109.47351 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47011 * 60.00139 * 6 5 3 8 8 C 1.52996 * 109.47264 * 299.99892 * 7 6 5 9 9 H 1.09004 * 109.47471 * 300.00655 * 8 7 6 10 10 C 1.52993 * 109.47617 * 180.02562 * 8 7 6 11 11 C 1.50706 * 109.47263 * 65.00003 * 10 8 7 12 12 O 1.21280 * 119.99689 * 0.02562 * 11 10 8 13 13 N 1.34774 * 120.00420 * 180.02562 * 11 10 8 14 14 C 1.46499 * 120.00059 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46740 * 184.84750 * 14 13 11 16 16 N 1.46498 * 110.02171 * 54.63466 * 15 14 13 17 17 C 1.36942 * 119.99754 * 61.62260 * 16 15 14 18 18 H 1.08004 * 119.99965 * 354.38686 * 17 16 15 19 19 C 1.38812 * 119.99901 * 174.39249 * 17 16 15 20 20 N 1.31625 * 119.99819 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47067 * 59.99596 * 21 19 17 23 23 H 1.48504 * 109.47068 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47038 * 299.99541 * 21 19 17 25 25 C 1.54266 * 110.03118 * 293.18656 * 15 14 13 26 26 C 1.54885 * 104.19771 * 217.10835 * 25 15 14 27 27 C 1.54886 * 102.75006 * 37.94664 * 26 25 15 28 28 C 1.53878 * 110.02958 * 176.03015 * 15 14 13 29 29 C 1.53003 * 109.46926 * 59.99932 * 8 7 6 30 30 H 1.09002 * 109.47117 * 300.00356 * 1 2 3 31 31 H 1.09000 * 109.46803 * 60.00050 * 1 2 3 32 32 H 1.08999 * 109.47162 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46834 * 60.00490 * 5 3 2 34 34 H 1.09004 * 109.47417 * 300.00493 * 5 3 2 35 35 H 1.09004 * 109.47029 * 300.00444 * 6 5 3 36 36 H 1.09001 * 109.47530 * 179.97438 * 6 5 3 37 37 H 1.09009 * 109.46930 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47013 * 60.00185 * 7 6 5 39 39 H 1.09007 * 109.47255 * 305.00622 * 10 8 7 40 40 H 1.08999 * 109.47846 * 185.00372 * 10 8 7 41 41 H 0.96998 * 119.99667 * 0.02562 * 13 11 10 42 42 H 1.08999 * 109.47445 * 64.84385 * 14 13 11 43 43 H 1.09001 * 109.46849 * 304.84141 * 14 13 11 44 44 H 0.96996 * 120.00139 * 241.62331 * 16 15 14 45 45 H 0.97002 * 119.99925 * 180.02562 * 20 19 17 46 46 H 1.09000 * 110.48942 * 335.79226 * 25 15 14 47 47 H 1.09005 * 110.48200 * 98.43363 * 25 15 14 48 48 H 1.09005 * 110.75902 * 279.62894 * 26 25 15 49 49 H 1.09002 * 110.75291 * 156.26286 * 26 25 15 50 50 H 1.08990 * 110.48806 * 203.37675 * 27 26 25 51 51 H 1.09007 * 110.48154 * 80.73098 * 27 26 25 52 52 H 1.09009 * 110.02873 * 238.56758 * 28 15 14 53 53 H 1.09005 * 110.03240 * 359.94240 * 28 15 14 54 54 H 1.09004 * 109.46927 * 59.99855 * 29 8 7 55 55 H 1.09001 * 109.46971 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2178 1.7714 -1.4425 6 6 2.8406 3.1688 -1.4425 7 6 4.1894 3.1260 -0.7213 8 6 3.9819 2.6602 0.7211 9 1 3.3169 3.3543 1.2351 10 6 5.3304 2.6180 1.4425 11 6 5.8862 4.0146 1.5507 12 8 5.2646 4.9515 1.0960 13 7 7.0740 4.2225 2.1527 14 6 7.6140 5.5803 2.2583 15 6 9.0155 5.5256 2.8696 16 7 9.8654 4.6177 2.0952 17 6 10.1282 4.8828 0.7776 18 1 9.6376 5.7092 0.2848 19 6 11.0250 4.0893 0.0755 20 7 11.6231 3.0825 0.6763 21 14 11.3829 4.4504 -1.7219 22 1 11.9399 5.8210 -1.8501 23 1 12.3679 3.4661 -2.2379 24 1 10.1260 4.3515 -2.5065 25 6 8.9343 5.0533 4.3359 26 6 10.0196 5.8849 5.0635 27 6 9.9082 7.2684 4.3761 28 6 9.6346 6.9341 2.8952 29 6 3.3590 1.2627 0.7211 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2570 1.8015 -1.9563 34 1 2.8830 1.0774 -1.9563 35 1 2.1757 3.8630 -0.9285 36 1 2.9889 3.5005 -2.4701 37 1 4.6333 4.1216 -0.7218 38 1 4.8542 2.4319 -1.2353 39 1 6.0243 1.9935 0.8796 40 1 5.1956 2.2023 2.4410 41 1 7.5713 3.4732 2.5160 42 1 6.9636 6.1816 2.8936 43 1 7.6677 6.0281 1.2659 44 1 10.2419 3.8289 2.5157 45 1 12.2501 2.5282 0.1858 46 1 7.9490 5.2654 4.7511 47 1 9.1581 3.9888 4.4068 48 1 11.0080 5.4533 4.9050 49 1 9.7974 5.9633 6.1277 50 1 10.8426 7.8205 4.4763 51 1 9.0801 7.8382 4.7978 52 1 10.5680 6.9419 2.3321 53 1 8.9370 7.6564 2.4712 54 1 4.0239 0.5685 0.2072 55 1 3.2107 0.9310 1.7488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714497775.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:05 Heat of formation + Delta-G solvation = -125.442846 kcal Electronic energy + Delta-G solvation = -30866.482334 eV Core-core repulsion = 26901.225039 eV Total energy + Delta-G solvation = -3965.257296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12849 -40.16698 -39.40327 -37.44209 -35.51069 -35.03568 -33.44491 -32.36599 -31.07681 -29.74875 -29.58511 -27.97924 -27.28652 -25.89496 -24.73383 -23.36548 -22.61300 -21.66466 -20.96416 -20.77407 -20.00888 -18.98618 -17.89364 -17.52159 -17.19370 -16.63265 -16.47031 -16.38259 -16.02373 -15.92900 -15.80967 -15.55069 -15.03378 -14.93634 -14.69070 -14.34602 -14.27042 -13.97587 -13.84252 -13.56492 -13.26155 -13.19096 -12.98761 -12.87336 -12.70480 -12.59165 -12.42265 -12.33290 -12.04941 -11.95075 -11.92934 -11.82652 -11.78202 -11.55675 -11.53407 -11.38138 -11.35468 -11.30813 -11.28234 -10.90788 -10.55648 -10.36875 -9.80953 -8.94172 -7.90810 -5.15820 1.44142 1.45342 1.50312 1.81459 2.41880 2.56976 2.85635 3.40219 3.66467 3.74336 3.77007 3.85504 3.90110 3.99510 4.10246 4.10992 4.17272 4.24257 4.32005 4.45185 4.49143 4.51457 4.54279 4.56085 4.58660 4.65895 4.70142 4.71313 4.75842 4.80181 4.83559 4.88234 4.89031 4.98540 5.03485 5.04341 5.05865 5.17129 5.20681 5.22192 5.25001 5.28778 5.32343 5.42112 5.44889 5.49022 5.53072 5.61035 5.67048 5.75938 6.31118 6.33406 6.77329 7.40457 7.44080 8.15076 8.39745 9.31397 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.002880 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.504244 B = 9721.454044 C =11155.516524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.091 3.909 4 H 0.068 0.932 5 C -0.135 4.135 6 C -0.109 4.109 7 C -0.124 4.124 8 C -0.056 4.056 9 H 0.072 0.928 10 C -0.131 4.131 11 C 0.504 3.496 12 O -0.586 6.586 13 N -0.702 5.702 14 C 0.128 3.872 15 C 0.183 3.817 16 N -0.713 5.713 17 C -0.212 4.212 18 H 0.059 0.941 19 C -0.064 4.064 20 N -0.960 5.960 21 Si 0.948 3.052 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.289 1.289 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.113 4.113 28 C -0.132 4.132 29 C -0.105 4.105 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.406 0.594 42 H 0.065 0.935 43 H 0.027 0.973 44 H 0.376 0.624 45 H 0.248 0.752 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.049 0.951 49 H 0.086 0.914 50 H 0.062 0.938 51 H 0.080 0.920 52 H 0.046 0.954 53 H 0.055 0.945 54 H 0.067 0.933 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.912 -2.214 6.386 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.034 3.966 4 H 0.086 0.914 5 C -0.172 4.172 6 C -0.146 4.146 7 C -0.161 4.161 8 C -0.075 4.075 9 H 0.091 0.909 10 C -0.171 4.171 11 C 0.292 3.708 12 O -0.467 6.467 13 N -0.351 5.351 14 C 0.002 3.998 15 C 0.093 3.907 16 N -0.353 5.353 17 C -0.344 4.344 18 H 0.077 0.923 19 C -0.257 4.257 20 N -0.611 5.611 21 Si 0.779 3.221 22 H -0.211 1.211 23 H -0.222 1.222 24 H -0.216 1.216 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.151 4.151 28 C -0.172 4.172 29 C -0.143 4.143 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.241 0.759 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.209 0.791 45 H 0.057 0.943 46 H 0.104 0.896 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.080 0.920 51 H 0.098 0.902 52 H 0.065 0.935 53 H 0.073 0.927 54 H 0.086 0.914 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.199 -1.635 5.905 20.153 hybrid contribution 0.986 -0.107 -1.385 1.703 sum -18.213 -1.742 4.520 18.846 Atomic orbital electron populations 1.22954 0.79919 1.03655 1.00651 1.87879 1.21104 1.28411 1.95198 1.22126 0.94870 0.84151 0.95500 0.91416 1.21990 1.01332 0.96718 0.97206 1.21401 0.96134 0.96576 1.00524 1.21705 0.97645 1.01380 0.95407 1.20710 0.94794 0.96370 0.95598 0.90945 1.21735 0.98108 0.92836 1.04422 1.21173 0.80830 0.92194 0.76612 1.90599 1.60724 1.46040 1.49359 1.45796 1.20410 1.10277 1.58608 1.21729 0.95347 0.83510 0.99258 1.20713 0.88039 0.90707 0.91275 1.42562 1.57631 1.27067 1.08053 1.19151 1.17244 1.09892 0.88115 0.92300 1.25206 1.00473 0.99197 1.00783 1.69747 1.33557 1.21164 1.36667 0.85593 0.77069 0.76892 0.82498 1.21127 1.22191 1.21613 1.22543 1.00021 0.99941 0.92775 1.22401 0.98207 0.95098 0.99583 1.22288 1.01618 0.97332 0.93847 1.22613 1.00215 0.96623 0.97710 1.21580 0.95186 0.96120 1.01415 0.93208 0.93510 0.88596 0.91046 0.91970 0.91748 0.91708 0.92604 0.93008 0.88667 0.86273 0.75881 0.91732 0.95441 0.79085 0.94301 0.89550 0.91612 0.93192 0.89537 0.91970 0.90163 0.93496 0.92671 0.91434 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.41 -8.30 10.35 -148.98 -1.54 -9.84 16 3 C 0.09 1.76 2.61 30.59 0.08 1.84 16 4 H 0.07 1.19 7.79 -2.39 -0.02 1.17 16 5 C -0.13 -2.64 5.54 30.59 0.17 -2.47 16 6 C -0.11 -2.40 5.92 30.59 0.18 -2.22 16 7 C -0.12 -3.33 4.94 30.59 0.15 -3.18 16 8 C -0.06 -1.31 1.84 -10.80 -0.02 -1.33 16 9 H 0.07 1.79 7.95 -2.38 -0.02 1.77 16 10 C -0.13 -3.21 5.18 29.85 0.15 -3.05 16 11 C 0.50 16.50 7.55 87.66 0.66 17.16 16 12 O -0.59 -22.87 13.96 -3.03 -0.04 -22.91 16 13 N -0.70 -23.11 5.22 -463.06 -2.42 -25.52 16 14 C 0.13 4.55 4.04 86.38 0.35 4.90 16 15 C 0.18 6.41 0.68 4.33 0.00 6.42 16 16 N -0.71 -31.83 4.63 -300.06 -1.39 -33.22 16 17 C -0.21 -11.05 8.52 84.03 0.72 -10.34 16 18 H 0.06 3.15 7.28 -2.91 -0.02 3.13 16 19 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 20 N -0.96 -55.87 13.07 21.65 0.28 -55.59 16 21 Si 0.95 46.29 29.55 68.60 2.03 48.31 16 22 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 25 C -0.12 -3.16 5.62 31.67 0.18 -2.99 16 26 C -0.12 -2.97 6.91 31.88 0.22 -2.75 16 27 C -0.11 -2.98 6.83 31.67 0.22 -2.77 16 28 C -0.13 -4.50 5.93 31.32 0.19 -4.31 16 29 C -0.11 -2.11 4.85 30.60 0.15 -1.96 16 30 H 0.05 0.58 8.09 -2.39 -0.02 0.56 16 31 H 0.05 0.56 7.87 -2.39 -0.02 0.55 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.21 7.87 -2.39 -0.02 1.20 16 34 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.06 1.37 8.14 -2.38 -0.02 1.36 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.88 5.96 -2.38 -0.01 1.87 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.41 12.63 8.00 -92.71 -0.74 11.89 16 42 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 43 H 0.03 1.17 7.48 -2.39 -0.02 1.15 16 44 H 0.38 18.00 7.45 -92.71 -0.69 17.31 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.09 2.02 7.78 -2.39 -0.02 2.01 16 47 H 0.07 1.85 7.72 -2.38 -0.02 1.83 16 48 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 52 H 0.05 1.93 7.36 -2.38 -0.02 1.91 16 53 H 0.05 1.80 7.67 -2.38 -0.02 1.78 16 54 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 55 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -64.84 419.83 1.43 -63.41 By element: Atomic # 1 Polarization: 44.50 SS G_CDS: -0.57 Total: 43.93 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.09 Total: -8.56 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -3.52 Total: -114.33 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.58 Total: -32.76 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -64.84 1.43 -63.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714497775.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.034 kcal (2) G-P(sol) polarization free energy of solvation -64.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds