Wall clock time and date at job start Tue Mar 31 2020 22:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99972 * 2 1 4 4 C 1.53007 * 109.47024 * 210.00127 * 3 2 1 5 5 C 1.52999 * 109.47152 * 300.00336 * 4 3 2 6 6 C 1.53007 * 109.47111 * 300.00315 * 5 4 3 7 7 C 1.52999 * 109.47111 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47169 * 174.99661 * 7 6 5 9 9 O 1.21273 * 119.99827 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99929 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99936 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47176 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46947 * 180.02562 * 12 11 10 14 14 H 1.08996 * 110.64188 * 303.30672 * 13 12 11 15 15 C 1.55167 * 110.86767 * 180.02562 * 13 12 11 16 16 C 1.55140 * 101.48205 * 205.89724 * 15 13 12 17 17 N 1.47426 * 104.71884 * 37.29810 * 16 15 13 18 18 C 1.36939 * 125.64553 * 155.81775 * 17 16 15 19 19 H 1.07997 * 119.99728 * 179.41197 * 18 17 16 20 20 C 1.38815 * 119.99845 * 359.69111 * 18 17 16 21 21 N 1.31619 * 119.99884 * 359.72042 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.72678 * 20 18 17 23 23 H 1.48498 * 109.47416 * 59.99578 * 22 20 18 24 24 H 1.48508 * 109.46609 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46903 * 299.99163 * 22 20 18 26 26 C 1.47017 * 108.70306 * 335.54918 * 17 16 15 27 27 C 1.52997 * 109.47396 * 59.99830 * 6 5 4 28 28 C 1.52999 * 109.47130 * 300.00158 * 27 6 5 29 29 H 1.09000 * 109.47120 * 59.99651 * 1 2 3 30 30 H 1.08996 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46857 * 299.99544 * 1 2 3 32 32 H 1.09000 * 109.47550 * 330.00346 * 3 2 1 33 33 H 1.09001 * 109.46883 * 180.02562 * 4 3 2 34 34 H 1.08996 * 109.46908 * 60.00529 * 4 3 2 35 35 H 1.08991 * 109.47085 * 180.02562 * 5 4 3 36 36 H 1.09004 * 109.46850 * 59.99837 * 5 4 3 37 37 H 1.09004 * 109.46874 * 299.99508 * 6 5 4 38 38 H 1.09000 * 109.47077 * 54.99943 * 7 6 5 39 39 H 1.08993 * 109.47398 * 295.00021 * 7 6 5 40 40 H 0.97003 * 119.99852 * 0.02562 * 10 8 7 41 41 H 1.09000 * 109.46959 * 60.00164 * 11 10 8 42 42 H 1.08997 * 109.46994 * 299.99977 * 11 10 8 43 43 H 1.09000 * 109.47077 * 60.00194 * 12 11 10 44 44 H 1.08997 * 109.47106 * 299.99867 * 12 11 10 45 45 H 1.08997 * 111.00435 * 324.13709 * 15 13 12 46 46 H 1.08997 * 111.00229 * 87.95375 * 15 13 12 47 47 H 1.08994 * 110.49646 * 278.45386 * 16 15 13 48 48 H 1.09000 * 110.33762 * 156.05529 * 16 15 13 49 49 H 0.97000 * 119.99517 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.87978 * 120.71058 * 26 17 16 51 51 H 1.09007 * 109.88391 * 241.86814 * 26 17 16 52 52 H 1.09001 * 109.46880 * 60.00025 * 27 6 5 53 53 H 1.08998 * 109.47440 * 179.97438 * 27 6 5 54 54 H 1.09001 * 109.47130 * 299.99713 * 28 27 6 55 55 H 1.09001 * 109.47117 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2632 -0.7213 5 6 4.2928 0.2891 -0.0001 6 6 4.5002 0.7549 1.4425 7 6 5.4335 -0.2195 2.1638 8 6 5.7360 0.3035 3.5444 9 8 5.2523 1.3520 3.9150 10 7 6.5431 -0.3946 4.3676 11 6 6.8367 0.1135 5.7099 12 6 7.7701 -0.8609 6.4312 13 6 8.0762 -0.3305 7.8333 14 1 8.5057 0.6699 7.7804 15 6 9.0229 -1.2956 8.5948 16 6 8.6601 -0.9835 10.0706 17 7 7.2037 -0.7548 10.0579 18 6 6.3630 -0.9051 11.1283 19 1 5.3078 -0.7030 11.0186 20 6 6.8680 -1.3115 12.3558 21 7 8.1540 -1.5578 12.4894 22 14 5.7223 -1.5091 13.8179 23 1 4.6867 -2.5254 13.5016 24 1 6.5025 -1.9500 15.0021 25 1 5.0668 -0.2095 14.1123 26 6 6.8046 -0.3324 8.7075 27 6 3.1516 0.7971 2.1637 28 6 2.2178 1.7712 1.4426 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3450 1.9994 -0.5138 33 1 3.8025 2.2589 -0.7209 34 1 3.2111 0.9314 -1.7490 35 1 5.2536 0.2594 -0.5137 36 1 3.8493 -0.7067 -0.0002 37 1 4.9436 1.7507 1.4425 38 1 6.3618 -0.3175 1.6010 39 1 4.9514 -1.1939 2.2420 40 1 6.9297 -1.2335 4.0712 41 1 5.9083 0.2116 6.2723 42 1 7.3191 1.0878 5.6320 43 1 8.6986 -0.9585 5.8685 44 1 7.2882 -1.8354 6.5090 45 1 8.8043 -2.3341 8.3465 46 1 10.0674 -1.0590 8.3921 47 1 9.1817 -0.0890 10.4109 48 1 8.9052 -1.8326 10.7086 49 1 8.5068 -1.8422 13.3471 50 1 6.0758 -1.0333 8.3002 51 1 6.3779 0.6700 8.7435 52 1 2.7082 -0.1986 2.1636 53 1 3.2994 1.1285 3.1915 54 1 2.6611 2.7670 1.4426 55 1 1.2568 1.8009 1.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714884209.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:28 Heat of formation + Delta-G solvation = -110.935278 kcal Electronic energy + Delta-G solvation = -29541.359293 eV Core-core repulsion = 25576.731093 eV Total energy + Delta-G solvation = -3964.628200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11171 -40.01475 -39.37874 -37.24762 -36.31996 -34.73829 -33.09059 -32.31810 -31.64423 -30.71879 -28.72277 -27.68978 -27.12339 -26.26844 -23.79145 -23.54730 -22.56427 -21.89796 -21.38227 -20.59434 -20.47952 -18.89990 -17.90652 -17.23428 -17.08195 -16.89127 -16.85191 -16.58452 -16.25981 -16.17961 -15.58854 -15.22163 -14.94655 -14.92742 -14.60888 -14.28539 -14.08412 -13.82979 -13.65401 -13.48661 -13.35700 -13.24004 -13.12523 -12.91252 -12.85885 -12.81932 -12.68153 -12.36076 -12.19512 -12.10677 -12.03774 -11.96814 -11.77226 -11.56434 -11.46761 -11.43117 -11.30098 -11.22609 -10.96013 -10.75746 -10.64883 -10.27323 -9.99299 -8.88662 -7.77947 -5.22848 1.44110 1.47725 1.54225 1.74580 2.29382 2.48606 2.93112 3.30069 3.72344 3.74514 3.76584 3.80128 3.87320 3.95154 3.99469 4.17904 4.22525 4.24662 4.33199 4.37532 4.45103 4.50027 4.51478 4.61275 4.64181 4.64466 4.68489 4.72099 4.74180 4.74748 4.85689 4.86829 4.88689 4.95423 5.03992 5.09110 5.12298 5.17688 5.20002 5.21157 5.26746 5.32246 5.37674 5.42547 5.48670 5.51199 5.59106 5.65937 5.68716 5.83155 6.32169 6.34674 6.66567 7.10874 7.37833 7.78835 8.42711 9.22991 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.001781 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.752827 B =15717.485465 C =16907.668645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.087 3.913 4 C -0.115 4.115 5 C -0.104 4.104 6 C -0.067 4.067 7 C -0.129 4.129 8 C 0.503 3.497 9 O -0.583 6.583 10 N -0.720 5.720 11 C 0.124 3.876 12 C -0.099 4.099 13 C -0.085 4.085 14 H 0.077 0.923 15 C -0.121 4.121 16 C 0.148 3.852 17 N -0.629 5.629 18 C -0.243 4.243 19 H 0.075 0.925 20 C -0.069 4.069 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.135 3.865 27 C -0.111 4.111 28 C -0.139 4.139 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.416 0.584 41 H 0.043 0.957 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.086 0.914 47 H -0.017 1.017 48 H 0.073 0.927 49 H 0.248 0.752 50 H 0.024 0.976 51 H 0.008 0.992 52 H 0.055 0.945 53 H 0.049 0.951 54 H 0.069 0.931 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 1.492 -32.462 33.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.030 3.970 4 C -0.152 4.152 5 C -0.141 4.141 6 C -0.086 4.086 7 C -0.169 4.169 8 C 0.291 3.709 9 O -0.463 6.463 10 N -0.373 5.373 11 C 0.000 4.000 12 C -0.137 4.137 13 C -0.104 4.104 14 H 0.095 0.905 15 C -0.159 4.159 16 C 0.023 3.977 17 N -0.355 5.355 18 C -0.372 4.372 19 H 0.093 0.907 20 C -0.261 4.261 21 N -0.597 5.597 22 Si 0.809 3.191 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.010 3.990 27 C -0.148 4.148 28 C -0.176 4.176 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.253 0.747 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.117 0.883 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.001 0.999 48 H 0.091 0.909 49 H 0.057 0.943 50 H 0.042 0.958 51 H 0.026 0.974 52 H 0.074 0.926 53 H 0.067 0.933 54 H 0.088 0.912 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.011 2.009 -31.986 32.807 hybrid contribution -0.760 0.148 1.583 1.763 sum -7.772 2.156 -30.402 31.454 Atomic orbital electron populations 1.22895 0.80611 1.03366 1.00256 1.87889 1.20287 1.28350 1.95071 1.22204 0.95552 0.84436 0.94831 1.21649 0.93458 1.00850 0.99276 1.21455 0.99805 0.99455 0.93412 1.20862 0.94368 0.98451 0.94883 1.21787 1.02938 1.01207 0.90956 1.21417 0.77301 0.83899 0.88252 1.90668 1.52574 1.25359 1.77726 1.45999 1.49926 1.26539 1.14842 1.21215 0.98578 0.97633 0.82605 1.21613 1.00181 0.98326 0.93536 1.22020 0.94896 0.99638 0.93887 0.90458 1.22913 0.99155 0.98943 0.94922 1.21839 0.82861 0.98421 0.94614 1.44869 1.04786 1.79267 1.06589 1.19411 0.90736 1.38108 0.88943 0.90699 1.25656 0.97848 1.02235 1.00369 1.70049 1.12370 1.53517 1.23786 0.85113 0.77622 0.77975 0.78379 1.20179 1.21583 1.20705 1.21550 0.96342 0.95782 0.85364 1.21492 0.95151 0.99243 0.98921 1.21983 0.99531 0.99493 0.96625 0.93047 0.88986 0.94380 0.91399 0.90033 0.90467 0.90253 0.91513 0.91986 0.86002 0.87346 0.74655 0.93904 0.92365 0.88287 0.90831 0.91332 0.89527 0.99915 0.90891 0.94280 0.95762 0.97397 0.92616 0.93276 0.91233 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 113.37 1.23 1.53 16 2 O -0.40 -6.57 9.00 -148.98 -1.34 -7.91 16 3 C 0.09 1.25 2.92 30.60 0.09 1.34 16 4 C -0.11 -1.35 5.66 30.60 0.17 -1.18 16 5 C -0.10 -1.26 5.06 30.60 0.15 -1.11 16 6 C -0.07 -1.10 1.84 -10.79 -0.02 -1.12 16 7 C -0.13 -1.80 5.17 29.85 0.15 -1.65 16 8 C 0.50 11.21 7.55 87.66 0.66 11.87 16 9 O -0.58 -18.53 13.96 -3.01 -0.04 -18.57 16 10 N -0.72 -13.78 5.56 -463.08 -2.57 -16.35 16 11 C 0.12 3.06 5.52 86.38 0.48 3.54 16 12 C -0.10 -2.26 4.73 30.59 0.14 -2.11 16 13 C -0.08 -2.76 2.97 -9.60 -0.03 -2.79 16 14 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.12 -4.31 6.55 32.07 0.21 -4.10 16 16 C 0.15 7.44 5.91 86.94 0.51 7.95 16 17 N -0.63 -33.88 3.39 -691.54 -2.35 -36.22 16 18 C -0.24 -14.26 10.27 84.03 0.86 -13.40 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 21 N -0.95 -57.72 10.08 21.65 0.22 -57.50 16 22 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 26 C 0.13 5.79 5.98 86.73 0.52 6.31 16 27 C -0.11 -2.30 4.80 30.59 0.15 -2.15 16 28 C -0.14 -2.47 5.63 30.60 0.17 -2.30 16 29 H 0.05 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.46 7.87 -2.39 -0.02 0.44 16 32 H 0.07 0.80 7.79 -2.39 -0.02 0.79 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.91 7.68 -2.38 -0.02 0.89 16 37 H 0.06 1.20 7.96 -2.38 -0.02 1.18 16 38 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.42 4.95 8.47 -92.71 -0.79 4.17 16 41 H 0.04 1.31 7.49 -2.39 -0.02 1.29 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 45 H 0.07 2.35 8.05 -2.39 -0.02 2.33 16 46 H 0.09 2.59 8.14 -2.39 -0.02 2.58 16 47 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 48 H 0.07 4.17 5.85 -2.39 -0.01 4.16 16 49 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 50 H 0.02 1.03 7.76 -2.39 -0.02 1.01 16 51 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 52 H 0.06 1.20 7.68 -2.39 -0.02 1.18 16 53 H 0.05 1.34 5.95 -2.39 -0.01 1.33 16 54 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 55 H 0.05 1.00 7.87 -2.39 -0.02 0.98 16 Total: -1.00 -75.80 418.28 1.92 -73.87 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.05 Total: 16.60 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.92 Total: -2.92 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.70 Total: -110.07 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -1.38 Total: -26.49 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -75.80 1.92 -73.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714884209.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.063 kcal (2) G-P(sol) polarization free energy of solvation -75.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds