Wall clock time and date at job start Tue Mar 31 2020 22:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00049 * 2 1 4 4 C 1.52996 * 109.47233 * 210.00240 * 3 2 1 5 5 C 1.52993 * 109.47172 * 300.00056 * 4 3 2 6 6 C 1.53000 * 109.47232 * 300.00053 * 5 4 3 7 7 C 1.53003 * 109.47306 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46882 * 174.99697 * 7 6 5 9 9 O 1.21275 * 120.00490 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99508 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99922 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.46854 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.46662 * 180.02562 * 12 11 10 14 14 H 1.09001 * 110.89193 * 54.30039 * 13 12 11 15 15 C 1.55157 * 111.00478 * 178.17893 * 13 12 11 16 16 C 1.54324 * 102.94262 * 153.57581 * 15 13 12 17 17 N 1.47025 * 107.27206 * 337.80857 * 16 15 13 18 18 C 1.36935 * 125.64692 * 178.97531 * 17 16 15 19 19 H 1.08006 * 119.99584 * 174.78751 * 18 17 16 20 20 C 1.38813 * 120.00155 * 354.79127 * 18 17 16 21 21 N 1.31617 * 120.00052 * 7.05250 * 20 18 17 22 22 Si 1.86798 * 120.00041 * 187.05583 * 20 18 17 23 23 H 1.48501 * 109.47422 * 94.98103 * 22 20 18 24 24 H 1.48500 * 109.47034 * 214.98582 * 22 20 18 25 25 H 1.48509 * 109.47049 * 334.98651 * 22 20 18 26 26 C 1.47466 * 108.72017 * 358.97269 * 17 16 15 27 27 C 1.52996 * 109.47085 * 59.99893 * 6 5 4 28 28 C 1.52995 * 109.47074 * 90.00039 * 3 2 1 29 29 H 1.09002 * 109.46931 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46721 * 299.99372 * 1 2 3 31 31 H 1.08993 * 109.47669 * 59.99657 * 1 2 3 32 32 H 1.09005 * 109.47235 * 330.00589 * 3 2 1 33 33 H 1.09005 * 109.47100 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.47038 * 60.00282 * 4 3 2 35 35 H 1.09006 * 109.47011 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.47659 * 60.00286 * 5 4 3 37 37 H 1.09005 * 109.47128 * 299.99939 * 6 5 4 38 38 H 1.08998 * 109.46808 * 55.00089 * 7 6 5 39 39 H 1.08997 * 109.46773 * 294.99944 * 7 6 5 40 40 H 0.97005 * 120.00150 * 359.72363 * 10 8 7 41 41 H 1.08999 * 109.47009 * 300.00254 * 11 10 8 42 42 H 1.09001 * 109.46615 * 60.00002 * 11 10 8 43 43 H 1.08999 * 109.47495 * 299.99926 * 12 11 10 44 44 H 1.09001 * 109.47533 * 60.00533 * 12 11 10 45 45 H 1.09000 * 110.72198 * 271.94327 * 15 13 12 46 46 H 1.09002 * 110.71874 * 35.03565 * 15 13 12 47 47 H 1.09000 * 109.88492 * 97.22716 * 16 15 13 48 48 H 1.09006 * 109.88011 * 218.23543 * 16 15 13 49 49 H 0.97000 * 120.00443 * 179.97438 * 21 20 18 50 50 H 1.08999 * 110.35174 * 265.24975 * 26 17 16 51 51 H 1.09005 * 110.40436 * 142.91539 * 26 17 16 52 52 H 1.08999 * 109.47472 * 60.00253 * 27 6 5 53 53 H 1.09004 * 109.47038 * 179.97438 * 27 6 5 54 54 H 1.09005 * 109.47279 * 180.02562 * 28 3 2 55 55 H 1.08998 * 109.47523 * 300.00020 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3588 1.2632 -0.7213 5 6 4.2926 0.2892 -0.0001 6 6 4.5001 0.7551 1.4424 7 6 5.4345 -0.2186 2.1634 8 6 5.7369 0.3046 3.5439 9 8 5.2525 1.3527 3.9148 10 7 6.5450 -0.3929 4.3668 11 6 6.8386 0.1154 5.7091 12 6 7.7730 -0.8583 6.4300 13 6 8.0791 -0.3277 7.8320 14 1 7.1591 -0.1272 8.3812 15 6 8.9894 -1.3122 8.6128 16 6 9.7194 -0.3898 9.6117 17 7 9.6718 0.9731 9.0624 18 6 10.1911 2.0919 9.6572 19 1 10.1794 3.0365 9.1337 20 6 10.7326 2.0118 10.9329 21 7 10.8741 0.8401 11.5154 22 14 11.2604 3.5671 11.8227 23 1 10.1587 4.0317 12.7035 24 1 12.4645 3.2830 12.6441 25 1 11.5776 4.6232 10.8280 26 6 8.9722 0.9362 7.7647 27 6 3.1515 0.7972 2.1637 28 6 2.2177 1.7713 1.4425 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.3449 1.9994 -0.5138 33 1 3.8024 2.2590 -0.7209 34 1 3.2110 0.9314 -1.7490 35 1 5.2533 0.2589 -0.5143 36 1 3.8494 -0.7066 -0.0001 37 1 4.9435 1.7509 1.4424 38 1 6.3627 -0.3158 1.6003 39 1 4.9532 -1.1934 2.2416 40 1 6.9287 -1.2336 4.0719 41 1 7.3200 1.0902 5.6312 42 1 5.9102 0.2126 6.2718 43 1 7.2920 -1.8333 6.5078 44 1 8.7014 -0.9550 5.8671 45 1 8.3909 -2.0551 9.1402 46 1 9.6987 -1.7964 7.9415 47 1 9.2160 -0.4178 10.5781 48 1 10.7550 -0.7108 9.7240 49 1 11.2528 0.7841 12.4067 50 1 9.6904 0.8504 6.9493 51 1 8.3584 1.8281 7.6384 52 1 2.7082 -0.1985 2.1637 53 1 3.2994 1.1287 3.1915 54 1 2.6606 2.7673 1.4425 55 1 1.2569 1.8014 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714884212.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:31 Heat of formation + Delta-G solvation = -112.946720 kcal Electronic energy + Delta-G solvation = -29445.729162 eV Core-core repulsion = 25481.013739 eV Total energy + Delta-G solvation = -3964.715423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.10021 -40.00215 -39.36503 -37.23942 -36.30744 -34.72347 -33.08960 -32.32268 -31.63815 -30.72532 -28.74616 -27.68775 -27.10695 -26.26247 -23.78275 -23.53770 -22.54024 -21.81659 -21.43436 -20.66445 -20.49230 -18.86227 -17.89724 -17.21927 -17.03398 -16.86049 -16.76611 -16.53959 -16.26760 -16.20432 -15.59882 -15.24041 -15.02921 -14.91886 -14.62459 -14.19000 -14.05757 -13.87670 -13.74160 -13.54067 -13.33426 -13.23568 -13.06682 -12.92508 -12.85293 -12.79862 -12.65215 -12.35531 -12.19292 -12.09883 -12.00653 -11.95916 -11.83027 -11.55234 -11.45173 -11.38212 -11.33009 -11.28180 -10.95582 -10.69631 -10.64793 -10.26516 -9.97919 -8.89158 -7.87660 -5.21503 1.43075 1.45486 1.54305 1.75816 2.30227 2.48187 2.93605 3.30056 3.67025 3.74361 3.79785 3.80971 3.88557 3.99180 4.00635 4.16563 4.23297 4.25136 4.34846 4.39035 4.46003 4.51200 4.52357 4.62505 4.62859 4.65243 4.69090 4.70397 4.74734 4.77372 4.86632 4.87900 4.91070 4.96355 5.01830 5.10041 5.13424 5.17322 5.19516 5.21802 5.26851 5.32658 5.38113 5.43885 5.49559 5.53291 5.60272 5.66454 5.69883 5.78920 6.20115 6.35260 6.68058 7.10054 7.39378 7.78147 8.42927 9.23212 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.001638 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.048300 B =17091.321189 C =17572.291567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.088 3.912 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.068 4.068 7 C -0.129 4.129 8 C 0.503 3.497 9 O -0.583 6.583 10 N -0.720 5.720 11 C 0.124 3.876 12 C -0.098 4.098 13 C -0.086 4.086 14 H 0.069 0.931 15 C -0.122 4.122 16 C 0.180 3.820 17 N -0.631 5.631 18 C -0.246 4.246 19 H 0.078 0.922 20 C -0.066 4.066 21 N -0.949 5.949 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.269 1.269 26 C 0.134 3.866 27 C -0.109 4.109 28 C -0.139 4.139 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.417 0.583 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.008 0.992 48 H 0.002 0.998 49 H 0.247 0.753 50 H 0.025 0.975 51 H 0.031 0.969 52 H 0.058 0.942 53 H 0.050 0.950 54 H 0.067 0.933 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.353 -7.354 -28.627 34.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.031 3.969 4 C -0.153 4.153 5 C -0.141 4.141 6 C -0.087 4.087 7 C -0.169 4.169 8 C 0.291 3.709 9 O -0.464 6.464 10 N -0.373 5.373 11 C 0.000 4.000 12 C -0.136 4.136 13 C -0.106 4.106 14 H 0.088 0.912 15 C -0.160 4.160 16 C 0.055 3.945 17 N -0.358 5.358 18 C -0.375 4.375 19 H 0.096 0.904 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.193 1.193 26 C 0.009 3.991 27 C -0.146 4.146 28 C -0.177 4.177 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.254 0.746 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.027 0.973 48 H 0.021 0.979 49 H 0.056 0.944 50 H 0.042 0.958 51 H 0.049 0.951 52 H 0.077 0.923 53 H 0.069 0.931 54 H 0.085 0.915 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.470 -6.719 -28.187 34.363 hybrid contribution 0.442 0.993 1.283 1.682 sum -18.028 -5.726 -26.904 32.888 Atomic orbital electron populations 1.22899 0.80576 1.03407 1.00253 1.87886 1.20312 1.28239 1.95074 1.22180 0.95428 0.84474 0.94868 1.21649 0.93587 1.00771 0.99316 1.21449 0.99705 0.99524 0.93431 1.20867 0.94568 0.98344 0.94934 1.21782 1.02810 1.01339 0.90921 1.21416 0.77366 0.83877 0.88233 1.90673 1.52718 1.25293 1.77685 1.45992 1.49861 1.26428 1.14971 1.21208 0.98573 0.97468 0.82799 1.21576 0.99773 0.98925 0.93311 1.22157 0.97382 0.94791 0.96270 0.91219 1.22757 0.98349 0.97040 0.97850 1.20953 0.96185 0.83401 0.94002 1.44854 1.66099 1.04476 1.20329 1.19467 1.31988 0.88407 0.97674 0.90403 1.25674 1.02159 1.00027 0.98087 1.70203 1.51155 1.23390 1.15060 0.85081 0.76988 0.78979 0.78441 1.21436 1.21817 1.19339 1.21827 0.93125 0.96814 0.87300 1.21479 0.94894 0.99337 0.98899 1.21982 0.99634 0.99450 0.96605 0.88877 0.94280 0.93192 0.91479 0.90267 0.90504 0.90513 0.91274 0.92362 0.86365 0.86923 0.74603 0.93517 0.92892 0.88580 0.90062 0.90008 0.90426 0.97341 0.97934 0.94374 0.95759 0.95101 0.92279 0.93129 0.91477 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -6.15 9.00 -148.98 -1.34 -7.49 16 3 C 0.09 1.22 2.92 30.59 0.09 1.31 16 4 C -0.12 -1.37 5.66 30.59 0.17 -1.20 16 5 C -0.10 -1.25 5.06 30.59 0.15 -1.10 16 6 C -0.07 -1.11 1.84 -10.79 -0.02 -1.13 16 7 C -0.13 -1.74 5.18 29.85 0.15 -1.58 16 8 C 0.50 10.95 7.55 87.66 0.66 11.61 16 9 O -0.58 -18.38 13.96 -3.01 -0.04 -18.42 16 10 N -0.72 -13.21 5.56 -463.05 -2.57 -15.78 16 11 C 0.12 2.97 5.55 86.38 0.48 3.45 16 12 C -0.10 -2.13 4.84 30.59 0.15 -1.98 16 13 C -0.09 -2.77 3.04 -9.40 -0.03 -2.80 16 14 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.12 -4.26 6.42 31.78 0.20 -4.05 16 16 C 0.18 9.08 5.38 86.73 0.47 9.55 16 17 N -0.63 -33.80 3.40 -691.85 -2.35 -36.15 16 18 C -0.25 -14.47 10.26 84.03 0.86 -13.61 16 19 H 0.08 4.42 7.84 -2.91 -0.02 4.39 16 20 C -0.07 -3.93 5.48 84.86 0.46 -3.46 16 21 N -0.95 -58.83 10.36 21.65 0.22 -58.60 16 22 Si 0.98 47.34 29.56 68.60 2.03 49.37 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 C 0.13 5.60 6.04 86.85 0.52 6.12 16 27 C -0.11 -2.13 4.80 30.59 0.15 -1.98 16 28 C -0.14 -2.37 5.63 30.59 0.17 -2.20 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.42 7.87 -2.39 -0.02 0.40 16 31 H 0.05 0.41 8.08 -2.39 -0.02 0.40 16 32 H 0.07 0.77 7.79 -2.38 -0.02 0.75 16 33 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.07 0.90 7.68 -2.39 -0.02 0.88 16 37 H 0.06 1.16 7.96 -2.38 -0.02 1.15 16 38 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.42 4.54 8.47 -92.70 -0.79 3.76 16 41 H 0.05 1.36 7.59 -2.39 -0.02 1.34 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.64 8.04 -2.39 -0.02 1.62 16 45 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 47 H 0.01 0.48 7.30 -2.39 -0.02 0.46 16 48 H 0.00 0.14 7.61 -2.38 -0.02 0.12 16 49 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 50 H 0.02 0.99 7.96 -2.39 -0.02 0.97 16 51 H 0.03 1.31 8.10 -2.38 -0.02 1.29 16 52 H 0.06 1.16 7.68 -2.39 -0.02 1.14 16 53 H 0.05 1.31 5.95 -2.38 -0.01 1.29 16 54 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 55 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 Total: -1.00 -77.09 419.31 1.88 -75.21 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.05 Total: 13.41 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 5.88 Total: -1.54 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.70 Total: -110.54 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.38 Total: -25.91 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -77.09 1.88 -75.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714884212.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.735 kcal (2) G-P(sol) polarization free energy of solvation -77.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds