Wall clock time and date at job start Tue Mar 31 2020 22:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 114.00081 * 2 1 4 4 C 1.52999 * 109.47092 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47270 * 175.64465 * 4 3 2 6 6 C 1.50701 * 110.43833 * 297.91066 * 5 4 3 7 7 O 1.21275 * 119.99896 * 124.02079 * 6 5 4 8 8 N 1.34782 * 119.99589 * 304.02510 * 6 5 4 9 9 C 1.46499 * 119.99702 * 174.99343 * 8 6 5 10 10 C 1.53000 * 109.47100 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46913 * 179.97438 * 10 9 8 12 12 H 1.08999 * 110.88453 * 54.30695 * 11 10 9 13 13 C 1.55153 * 111.00032 * 178.17925 * 11 10 9 14 14 C 1.54325 * 102.94010 * 153.57820 * 13 11 10 15 15 N 1.47023 * 107.27145 * 337.80790 * 14 13 11 16 16 C 1.36937 * 125.65002 * 178.97835 * 15 14 13 17 17 H 1.07999 * 120.00104 * 179.97438 * 16 15 14 18 18 C 1.38819 * 119.99584 * 359.97113 * 16 15 14 19 19 N 1.31613 * 120.00201 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99564 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47349 * 90.00155 * 20 18 16 22 22 H 1.48500 * 109.47138 * 209.99987 * 20 18 16 23 23 H 1.48502 * 109.47151 * 330.00092 * 20 18 16 24 24 C 1.47465 * 108.72309 * 358.97421 * 15 14 13 25 25 C 1.54889 * 110.48657 * 60.45501 * 5 4 3 26 26 C 1.55238 * 102.59146 * 156.67684 * 25 5 4 27 27 C 1.54271 * 104.22958 * 322.07933 * 26 25 5 28 28 C 1.53876 * 106.59466 * 23.61499 * 27 26 25 29 29 H 1.08994 * 109.46888 * 59.99990 * 1 2 3 30 30 H 1.08996 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46771 * 300.00332 * 1 2 3 32 32 H 1.08999 * 109.47670 * 59.99752 * 3 2 1 33 33 H 1.09001 * 109.47223 * 299.99908 * 3 2 1 34 34 H 1.09001 * 109.47352 * 55.64677 * 4 3 2 35 35 H 1.08997 * 109.47318 * 295.64820 * 4 3 2 36 36 H 0.96997 * 120.00201 * 354.98739 * 8 6 5 37 37 H 1.08995 * 109.47108 * 299.99925 * 9 8 6 38 38 H 1.09005 * 109.47197 * 59.99681 * 9 8 6 39 39 H 1.08995 * 109.47393 * 300.00136 * 10 9 8 40 40 H 1.08996 * 109.46943 * 60.00128 * 10 9 8 41 41 H 1.08995 * 110.72361 * 271.94027 * 13 11 10 42 42 H 1.09001 * 110.72418 * 35.03852 * 13 11 10 43 43 H 1.08996 * 109.88473 * 97.22809 * 14 13 11 44 44 H 1.08999 * 109.88137 * 218.23466 * 14 13 11 45 45 H 0.97006 * 119.99893 * 180.02562 * 19 18 16 46 46 H 1.09000 * 110.35031 * 265.25511 * 24 15 14 47 47 H 1.09002 * 110.40615 * 142.91385 * 24 15 14 48 48 H 1.08999 * 110.75350 * 275.06726 * 25 5 4 49 49 H 1.08999 * 110.75811 * 38.43524 * 25 5 4 50 50 H 1.08994 * 110.46933 * 203.39392 * 26 25 5 51 51 H 1.09001 * 110.47159 * 80.77101 * 26 25 5 52 52 H 1.08993 * 110.03426 * 264.32870 * 27 26 25 53 53 H 1.08997 * 110.02950 * 142.89380 * 27 26 25 54 54 H 1.09008 * 110.02957 * 240.71069 * 28 27 26 55 55 H 1.08997 * 110.03063 * 119.28556 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1576 2.5780 -0.1089 6 6 3.7606 3.2309 -1.4079 7 8 3.2131 4.3130 -1.4002 8 7 4.0142 2.6121 -2.5781 9 6 3.5317 3.1930 -3.8334 10 6 3.9518 2.3007 -5.0031 11 6 3.4473 2.9071 -6.3140 12 1 3.7811 3.9395 -6.4184 13 6 3.8935 2.0528 -7.5299 14 6 2.8076 2.3572 -8.5833 15 7 1.6180 2.8298 -7.8600 16 6 0.4389 3.2236 -8.4342 17 1 -0.3799 3.5555 -7.8130 18 6 0.2961 3.1962 -9.8147 19 7 1.2937 2.7912 -10.5717 20 14 -1.3122 3.7340 -10.5981 21 1 -1.2621 5.1910 -10.8811 22 1 -1.5180 2.9902 -11.8668 23 1 -2.4351 3.4485 -9.6692 24 6 1.9045 2.8095 -6.4136 25 6 3.7314 3.4579 1.0925 26 6 4.8635 4.5182 1.1538 27 6 6.1426 3.7277 0.8088 28 6 5.6937 2.4941 0.0059 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8523 0.5776 -0.8475 35 1 3.8622 0.7126 0.9272 36 1 4.5161 1.7822 -2.5891 37 1 2.4446 3.2676 -3.8051 38 1 3.9608 4.1867 -3.9625 39 1 5.0389 2.2264 -5.0313 40 1 3.5230 1.3069 -4.8741 41 1 4.8743 2.3695 -7.8846 42 1 3.9009 0.9931 -7.2748 43 1 3.1590 3.1318 -9.2649 44 1 2.5693 1.4523 -9.1422 45 1 1.1940 2.7725 -11.5364 46 1 1.5540 1.8772 -5.9708 47 1 1.4379 3.6630 -5.9217 48 1 2.7670 3.9293 0.9031 49 1 3.7018 2.8706 2.0102 50 1 4.9354 4.9416 2.1556 51 1 4.6905 5.3037 0.4182 52 1 6.6463 3.4149 1.7233 53 1 6.8104 4.3428 0.2058 54 1 5.9796 1.5826 0.5309 55 1 6.1438 2.5107 -0.9867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714884820.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:25 Heat of formation + Delta-G solvation = -108.252054 kcal Electronic energy + Delta-G solvation = -30534.118603 eV Core-core repulsion = 26569.606756 eV Total energy + Delta-G solvation = -3964.511847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68207 -39.53538 -38.88017 -38.10513 -36.44119 -34.80579 -33.61430 -32.39401 -30.75981 -29.68836 -28.94779 -28.06987 -26.81966 -26.48745 -24.14882 -23.67827 -22.91109 -21.83525 -21.28743 -21.16404 -20.02622 -18.87955 -17.85461 -17.54296 -17.13602 -16.93595 -16.87685 -16.54736 -16.29287 -15.96099 -15.72874 -15.63299 -15.41554 -14.87349 -14.72117 -14.26829 -14.10606 -13.94375 -13.82849 -13.68054 -13.32330 -13.24095 -13.06722 -12.83180 -12.66961 -12.62339 -12.45345 -12.26552 -12.24684 -12.12519 -12.02638 -11.92907 -11.82449 -11.76335 -11.58938 -11.51465 -11.40404 -11.34363 -11.28363 -10.72458 -10.70473 -10.60434 -10.05819 -8.90635 -7.87070 -5.22375 1.42561 1.44944 1.53603 1.64265 2.18364 2.47592 2.70381 3.30583 3.45715 3.59898 3.64941 3.73430 3.79716 3.96402 4.04355 4.06364 4.14288 4.19162 4.33325 4.35576 4.36207 4.43138 4.46553 4.49555 4.54404 4.57426 4.60259 4.67344 4.68419 4.74734 4.81099 4.83173 4.88605 4.94327 4.98702 5.04896 5.06228 5.08524 5.10580 5.14930 5.18710 5.24003 5.27721 5.37387 5.42656 5.47873 5.50874 5.52301 5.69630 5.78097 6.13914 6.19331 6.58511 7.09507 7.28081 7.77299 8.41663 9.23310 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.002362 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.966185 B =11849.317342 C =12793.187205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.057 3.943 4 C -0.096 4.096 5 C -0.074 4.074 6 C 0.520 3.480 7 O -0.581 6.581 8 N -0.717 5.717 9 C 0.125 3.875 10 C -0.098 4.098 11 C -0.085 4.085 12 H 0.071 0.929 13 C -0.122 4.122 14 C 0.181 3.819 15 N -0.631 5.631 16 C -0.245 4.245 17 H 0.078 0.922 18 C -0.068 4.068 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.270 1.270 24 C 0.135 3.865 25 C -0.103 4.103 26 C -0.127 4.127 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.034 0.966 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.414 0.586 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.007 0.993 44 H 0.004 0.996 45 H 0.247 0.753 46 H 0.023 0.977 47 H 0.030 0.970 48 H 0.054 0.946 49 H 0.098 0.902 50 H 0.077 0.923 51 H 0.042 0.958 52 H 0.086 0.914 53 H 0.058 0.942 54 H 0.105 0.895 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.489 -5.624 28.143 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.019 4.019 4 C -0.134 4.134 5 C -0.078 4.078 6 C 0.307 3.693 7 O -0.460 6.460 8 N -0.369 5.369 9 C 0.001 3.999 10 C -0.136 4.136 11 C -0.105 4.105 12 H 0.089 0.911 13 C -0.160 4.160 14 C 0.056 3.944 15 N -0.358 5.358 16 C -0.374 4.374 17 H 0.096 0.904 18 C -0.261 4.261 19 N -0.600 5.600 20 Si 0.806 3.194 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.195 1.195 24 C 0.010 3.990 25 C -0.141 4.141 26 C -0.165 4.165 27 C -0.161 4.161 28 C -0.145 4.145 29 H 0.053 0.947 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.251 0.749 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.025 0.975 44 H 0.022 0.978 45 H 0.056 0.944 46 H 0.041 0.959 47 H 0.048 0.952 48 H 0.072 0.928 49 H 0.116 0.884 50 H 0.096 0.904 51 H 0.061 0.939 52 H 0.105 0.895 53 H 0.077 0.923 54 H 0.123 0.877 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.102 -5.019 27.933 30.474 hybrid contribution -1.391 0.596 -1.355 2.031 sum 9.710 -4.422 26.578 28.640 Atomic orbital electron populations 1.22897 0.79968 1.03879 1.00351 1.87799 1.20951 1.28248 1.95505 1.22620 0.95141 0.84376 0.99794 1.21548 0.91906 0.94277 1.05620 1.21632 0.98728 0.95540 0.91865 1.20960 0.77394 0.84721 0.86195 1.90682 1.44438 1.22793 1.88110 1.45921 1.57308 1.28042 1.05599 1.21229 0.98497 0.97171 0.82987 1.21580 1.02622 0.98795 0.90637 1.22151 0.94274 0.99494 0.94619 0.91082 1.22759 0.98256 0.99992 0.94989 1.20936 0.85498 0.95693 0.92261 1.44856 1.12086 1.76914 1.01910 1.19457 0.91098 1.36228 0.90611 0.90442 1.25670 1.01421 1.02340 0.96639 1.70198 1.32108 1.54145 1.03593 0.85079 0.79145 0.77474 0.77654 1.21238 1.21758 1.19468 1.21812 0.95055 0.97543 0.84599 1.22544 0.98580 0.96471 0.96517 1.22405 0.94878 0.97738 1.01457 1.22151 0.97109 0.96066 1.00753 1.22274 0.89979 1.00448 1.01784 0.94702 0.88058 0.92972 0.92431 0.95706 0.89694 0.87595 0.74869 0.93582 0.92569 0.88440 0.90249 0.89917 0.90508 0.97481 0.97755 0.94378 0.95899 0.95168 0.92769 0.88367 0.90395 0.93934 0.89500 0.92330 0.87668 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -8.13 10.70 -148.98 -1.59 -9.73 16 3 C 0.06 1.04 5.50 71.98 0.40 1.44 16 4 C -0.10 -1.23 4.44 30.59 0.14 -1.10 16 5 C -0.07 -1.10 0.47 -51.85 -0.02 -1.12 16 6 C 0.52 11.75 5.09 87.66 0.45 12.20 16 7 O -0.58 -18.59 15.02 -3.02 -0.05 -18.63 16 8 N -0.72 -13.89 5.24 -463.06 -2.43 -16.32 16 9 C 0.13 3.05 5.56 86.38 0.48 3.53 16 10 C -0.10 -2.18 4.84 30.60 0.15 -2.03 16 11 C -0.09 -2.76 3.04 -9.40 -0.03 -2.79 16 12 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.12 -4.27 6.42 31.78 0.20 -4.07 16 14 C 0.18 9.18 5.37 86.73 0.47 9.64 16 15 N -0.63 -33.87 3.40 -691.88 -2.35 -36.21 16 16 C -0.24 -14.38 10.28 84.04 0.86 -13.52 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 18 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 19 N -0.95 -59.01 10.31 21.65 0.22 -58.79 16 20 Si 0.98 47.32 29.55 68.60 2.03 49.34 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 24 C 0.13 5.65 6.04 86.85 0.52 6.17 16 25 C -0.10 -1.61 4.47 32.01 0.14 -1.47 16 26 C -0.13 -1.99 6.52 31.79 0.21 -1.79 16 27 C -0.12 -1.41 6.80 31.32 0.21 -1.20 16 28 C -0.11 -1.08 5.92 31.32 0.19 -0.90 16 29 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.97 7.40 -2.39 -0.02 0.95 16 33 H 0.02 0.57 7.19 -2.39 -0.02 0.55 16 34 H 0.08 0.98 7.48 -2.39 -0.02 0.97 16 35 H 0.11 0.95 8.09 -2.39 -0.02 0.94 16 36 H 0.41 5.36 7.83 -92.71 -0.73 4.64 16 37 H 0.05 1.36 7.59 -2.39 -0.02 1.34 16 38 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.67 8.03 -2.39 -0.02 1.65 16 41 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 43 H 0.01 0.40 7.38 -2.39 -0.02 0.38 16 44 H 0.00 0.24 7.50 -2.39 -0.02 0.22 16 45 H 0.25 14.83 8.31 -92.70 -0.77 14.05 16 46 H 0.02 0.94 7.96 -2.39 -0.02 0.93 16 47 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 48 H 0.05 1.12 7.40 -2.39 -0.02 1.10 16 49 H 0.10 1.05 8.06 -2.39 -0.02 1.03 16 50 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.04 0.93 7.55 -2.39 -0.02 0.91 16 52 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 54 H 0.10 0.56 7.80 -2.38 -0.02 0.54 16 55 H 0.07 0.72 7.71 -2.39 -0.02 0.70 16 Total: -1.00 -77.25 421.49 2.02 -75.22 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.11 Total: 14.00 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 6.07 Total: 1.12 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -4.55 Total: -111.32 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.64 Total: -28.36 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -77.25 2.02 -75.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714884820.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.028 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds