Wall clock time and date at job start Tue Mar 31 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00026 * 2 1 4 4 H 1.08998 * 109.46968 * 18.06067 * 3 2 1 5 5 C 1.50695 * 109.47279 * 138.05991 * 3 2 1 6 6 O 1.21283 * 120.00365 * 9.52528 * 5 3 2 7 7 N 1.34771 * 120.00285 * 189.52775 * 5 3 2 8 8 C 1.47023 * 125.64694 * 5.07288 * 7 5 3 9 9 C 1.54379 * 107.28901 * 178.87301 * 8 7 5 10 10 C 1.55161 * 102.91922 * 337.86251 * 9 8 7 11 11 H 1.08994 * 111.00486 * 277.36216 * 10 9 8 12 12 C 1.53003 * 110.99965 * 153.54401 * 10 9 8 13 13 N 1.46494 * 109.46805 * 69.58478 * 12 10 9 14 14 C 1.46500 * 120.00206 * 89.99962 * 13 12 10 15 15 C 1.36945 * 119.99917 * 269.99338 * 13 12 10 16 16 H 1.07993 * 119.99677 * 24.13502 * 15 13 12 17 17 C 1.38812 * 120.00224 * 204.12815 * 15 13 12 18 18 N 1.31622 * 119.99726 * 11.12740 * 17 15 13 19 19 Si 1.86797 * 120.00193 * 191.12174 * 17 15 13 20 20 H 1.48493 * 109.47080 * 60.00478 * 19 17 15 21 21 H 1.48500 * 109.47019 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47175 * 300.00225 * 19 17 15 23 23 C 1.47433 * 125.65355 * 185.03551 * 7 5 3 24 24 C 1.52998 * 109.47054 * 258.05894 * 3 2 1 25 25 C 1.52998 * 109.47093 * 65.31521 * 24 3 2 26 26 C 1.52998 * 109.47456 * 179.97438 * 25 24 3 27 27 C 1.53004 * 109.46974 * 59.99601 * 26 25 24 28 28 C 1.52998 * 109.47355 * 300.00461 * 27 26 25 29 29 C 1.52998 * 109.47327 * 305.31470 * 24 3 2 30 30 H 1.09000 * 109.47351 * 181.79424 * 1 2 3 31 31 H 1.09002 * 109.47043 * 301.79138 * 1 2 3 32 32 H 1.09000 * 109.47197 * 61.79105 * 1 2 3 33 33 H 1.08998 * 109.88180 * 298.32390 * 8 7 5 34 34 H 1.09005 * 109.88085 * 59.33795 * 8 7 5 35 35 H 1.08997 * 110.75372 * 219.49239 * 9 8 7 36 36 H 1.08999 * 110.70324 * 96.20957 * 9 8 7 37 37 H 1.08995 * 109.47561 * 309.58271 * 12 10 9 38 38 H 1.09000 * 109.46632 * 189.57959 * 12 10 9 39 39 H 1.09000 * 109.47342 * 86.88199 * 14 13 12 40 40 H 1.08996 * 109.47359 * 326.87658 * 14 13 12 41 41 H 1.09004 * 109.46952 * 206.87970 * 14 13 12 42 42 H 0.96999 * 119.99802 * 180.02562 * 18 17 15 43 43 H 1.08994 * 110.36571 * 85.32242 * 23 7 5 44 44 H 1.08999 * 110.45614 * 323.05072 * 23 7 5 45 45 H 1.09000 * 109.47132 * 185.31337 * 24 3 2 46 46 H 1.09000 * 109.46981 * 299.99908 * 25 24 3 47 47 H 1.09000 * 109.47456 * 59.99927 * 25 24 3 48 48 H 1.09000 * 109.47029 * 299.99975 * 26 25 24 49 49 H 1.09004 * 109.47598 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.47115 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.46937 * 60.00318 * 27 26 25 52 52 H 1.09000 * 109.46981 * 299.99829 * 28 27 26 53 53 H 1.09000 * 109.47456 * 179.97438 * 28 27 26 54 54 H 1.09000 * 109.47029 * 299.99842 * 29 24 3 55 55 H 1.09000 * 109.47123 * 59.99861 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2654 2.0348 0.3186 5 6 3.1800 1.3346 0.9496 6 8 3.5943 0.3024 1.4332 7 7 3.7658 2.5075 1.2615 8 6 3.3039 3.8363 0.8343 9 6 4.2636 4.8761 1.4516 10 6 4.8789 4.1102 2.6526 11 1 4.2184 4.1466 3.5188 12 6 6.2649 4.6573 2.9998 13 7 6.1310 6.0002 3.5697 14 6 5.9712 6.1696 5.0161 15 6 6.1552 7.0973 2.7504 16 1 5.8838 7.0000 1.7097 17 6 6.5285 8.3343 3.2576 18 7 7.0660 8.4191 4.4561 19 14 6.2681 9.8785 2.2394 20 1 4.8223 10.0355 1.9391 21 1 6.7471 11.0601 3.0008 22 1 7.0284 9.7676 0.9687 23 6 4.9756 2.6709 2.0882 24 6 2.4903 1.6500 -1.4113 25 6 1.2858 1.7506 -2.3493 26 6 1.7658 2.0957 -3.7605 27 6 2.7110 1.0010 -4.2597 28 6 3.9155 0.9004 -3.3216 29 6 3.4351 0.5549 -1.9101 30 1 -0.3634 -1.0271 0.0322 31 1 -0.3633 0.5414 0.8735 32 1 -0.3633 0.4858 -0.9056 33 1 3.3307 3.9062 -0.2531 34 1 2.2886 4.0084 1.1918 35 1 3.7145 5.7532 1.7939 36 1 5.0370 5.1585 0.7372 37 1 6.8735 4.7049 2.0969 38 1 6.7432 4.0004 3.7263 39 1 6.9530 6.2129 5.4875 40 1 5.4106 5.3271 5.4209 41 1 5.4311 7.0951 5.2160 42 1 7.3265 9.2836 4.8107 43 1 5.8708 2.5628 1.4759 44 1 4.9826 1.9444 2.9008 45 1 3.0173 2.6039 -1.3930 46 1 0.7588 0.7966 -2.3676 47 1 0.6127 2.5308 -1.9940 48 1 2.2925 3.0498 -3.7419 49 1 0.9077 2.1670 -4.4289 50 1 3.0526 1.2466 -5.2652 51 1 2.1842 0.0469 -4.2782 52 1 4.4422 1.8545 -3.3030 53 1 4.5886 0.1202 -3.6770 54 1 4.2932 0.4832 -1.2419 55 1 2.9081 -0.3991 -1.9284 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714903472.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:28 Heat of formation + Delta-G solvation = -90.781492 kcal Electronic energy + Delta-G solvation = -31479.588971 eV Core-core repulsion = 27515.834705 eV Total energy + Delta-G solvation = -3963.754267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65822 -39.90575 -38.73360 -37.86111 -37.04121 -34.07128 -32.98229 -31.90021 -31.66704 -30.35483 -28.80562 -27.91967 -27.37822 -26.16595 -24.29867 -23.44939 -23.12388 -22.51993 -21.06810 -20.73954 -20.25600 -18.73090 -18.31052 -17.61112 -17.30766 -16.92520 -16.55829 -16.33147 -15.93610 -15.59735 -15.21912 -15.14113 -15.06176 -14.92572 -14.59958 -14.49753 -14.39761 -14.26096 -13.74559 -13.64593 -13.31675 -13.19309 -13.06331 -12.96937 -12.79206 -12.77511 -12.61029 -12.53005 -12.30934 -12.15201 -12.02096 -11.99362 -11.87502 -11.75890 -11.56191 -11.46632 -11.37899 -11.23044 -11.12007 -10.83289 -10.53989 -10.29386 -9.68223 -8.69091 -7.77750 -5.25064 1.50361 1.51764 1.53235 1.59429 1.73869 2.56256 2.90847 3.34657 3.38507 3.57891 3.59157 3.72741 3.76522 3.86272 3.97727 4.03556 4.16744 4.27309 4.30545 4.37550 4.38964 4.42549 4.50221 4.52740 4.55058 4.63912 4.64101 4.66157 4.68786 4.75781 4.83809 4.86300 4.88814 4.91704 5.01439 5.04360 5.11967 5.16071 5.22892 5.25093 5.29606 5.30755 5.33305 5.38125 5.42072 5.42966 5.51820 5.60132 5.67779 5.75928 6.07367 6.40327 6.49362 7.08881 7.21485 7.92896 8.39429 9.28150 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.002773 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.582953 B =10093.947927 C =11077.508691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.382 6.382 3 C 0.087 3.913 4 H 0.107 0.893 5 C 0.520 3.480 6 O -0.576 6.576 7 N -0.613 5.613 8 C 0.098 3.902 9 C -0.107 4.107 10 C -0.104 4.104 11 H 0.066 0.934 12 C 0.161 3.839 13 N -0.614 5.614 14 C 0.176 3.824 15 C -0.249 4.249 16 H 0.083 0.917 17 C -0.059 4.059 18 N -0.946 5.946 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.303 1.303 22 H -0.275 1.275 23 C 0.116 3.884 24 C -0.094 4.094 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.117 4.117 29 C -0.104 4.104 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.041 0.959 39 H -0.008 1.008 40 H 0.020 0.980 41 H 0.030 0.970 42 H 0.245 0.755 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.060 0.940 52 H 0.061 0.939 53 H 0.059 0.941 54 H 0.030 0.970 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 -13.310 -16.880 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.300 6.300 3 C 0.025 3.975 4 H 0.125 0.875 5 C 0.309 3.691 6 O -0.455 6.455 7 N -0.348 5.348 8 C -0.023 4.023 9 C -0.145 4.145 10 C -0.126 4.126 11 H 0.085 0.915 12 C 0.035 3.965 13 N -0.337 5.337 14 C 0.031 3.969 15 C -0.379 4.379 16 H 0.101 0.899 17 C -0.254 4.254 18 N -0.593 5.593 19 Si 0.794 3.206 20 H -0.200 1.200 21 H -0.230 1.230 22 H -0.201 1.201 23 C -0.007 4.007 24 C -0.113 4.113 25 C -0.149 4.149 26 C -0.154 4.154 27 C -0.155 4.155 28 C -0.155 4.155 29 C -0.142 4.142 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.010 0.990 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.079 0.921 52 H 0.080 0.920 53 H 0.078 0.922 54 H 0.049 0.951 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.317 -13.968 -16.563 26.534 hybrid contribution 0.346 1.073 0.425 1.205 sum -14.971 -12.894 -16.139 25.512 Atomic orbital electron populations 1.23223 0.79059 1.04176 1.01436 1.87999 1.21515 1.25646 1.94804 1.22032 0.93514 0.87332 0.94586 0.87503 1.20883 0.84772 0.81799 0.81655 1.90674 1.65948 1.33761 1.55119 1.48581 1.28551 1.06423 1.51204 1.22403 0.98968 0.80379 1.00583 1.22496 0.98388 0.97076 0.96521 1.22825 0.99567 0.92403 0.97828 0.91531 1.20727 0.93315 0.85367 0.97132 1.44066 1.84824 1.01676 1.03114 1.20508 0.96343 0.96567 0.83465 1.19584 1.37109 0.87130 0.94041 0.89920 1.25837 0.99678 1.01560 0.98286 1.70236 1.46412 1.23532 1.19158 0.85362 0.78182 0.79078 0.77974 1.19966 1.22956 1.20093 1.22164 0.87426 0.96940 0.94142 1.21625 0.98230 0.99734 0.91730 1.21658 0.95950 1.02558 0.94697 1.21522 0.99493 0.98626 0.95741 1.21529 0.95960 0.99409 0.98585 1.21535 0.98170 1.01488 0.94291 1.21378 0.97657 0.98730 0.96426 0.88536 0.93430 0.91368 0.89029 0.89835 0.90413 0.90892 0.93154 0.94014 0.99007 0.96114 0.95135 0.94580 0.91133 0.91975 0.89149 0.91252 0.90166 0.91645 0.90512 0.91242 0.92133 0.92038 0.92233 0.95123 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.40 113.37 1.18 1.42 16 2 O -0.38 -8.87 8.75 -130.12 -1.14 -10.01 16 3 C 0.09 1.81 1.76 29.85 0.05 1.86 16 4 H 0.11 1.69 7.44 -2.39 -0.02 1.67 16 5 C 0.52 15.14 6.17 87.66 0.54 15.68 16 6 O -0.58 -22.18 16.76 15.82 0.27 -21.91 16 7 N -0.61 -16.28 3.33 -811.69 -2.70 -18.98 16 8 C 0.10 2.07 6.14 86.75 0.53 2.60 16 9 C -0.11 -2.93 5.18 31.80 0.16 -2.77 16 10 C -0.10 -3.27 3.27 -9.40 -0.03 -3.30 16 11 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 12 C 0.16 6.12 5.21 86.38 0.45 6.57 16 13 N -0.61 -29.17 2.89 -726.95 -2.10 -31.27 16 14 C 0.18 8.62 8.99 127.77 1.15 9.76 16 15 C -0.25 -12.65 9.08 84.03 0.76 -11.89 16 16 H 0.08 3.91 6.83 -2.91 -0.02 3.89 16 17 C -0.06 -3.21 5.08 84.86 0.43 -2.77 16 18 N -0.95 -55.26 10.72 21.65 0.23 -55.02 16 19 Si 0.97 43.17 29.57 68.60 2.03 45.20 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.12 3.41 6.40 86.85 0.56 3.96 16 24 C -0.09 -1.62 1.94 -10.80 -0.02 -1.64 16 25 C -0.11 -1.32 4.39 30.59 0.13 -1.19 16 26 C -0.12 -1.27 5.92 30.60 0.18 -1.09 16 27 C -0.12 -1.50 5.92 30.60 0.18 -1.32 16 28 C -0.12 -1.95 5.92 30.61 0.18 -1.77 16 29 C -0.10 -2.19 4.82 30.61 0.15 -2.04 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 0.62 8.09 -2.39 -0.02 0.60 16 32 H 0.07 0.66 5.98 -2.39 -0.01 0.65 16 33 H 0.09 1.52 5.96 -2.39 -0.01 1.51 16 34 H 0.08 1.48 8.11 -2.38 -0.02 1.46 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 37 H 0.05 1.90 7.94 -2.39 -0.02 1.88 16 38 H 0.04 1.54 8.07 -2.39 -0.02 1.53 16 39 H -0.01 -0.45 7.78 -2.39 -0.02 -0.47 16 40 H 0.02 0.87 8.10 -2.39 -0.02 0.85 16 41 H 0.03 1.61 6.80 -2.38 -0.02 1.60 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 44 H 0.06 1.97 7.99 -2.39 -0.02 1.95 16 45 H 0.09 1.48 5.64 -2.39 -0.01 1.46 16 46 H 0.07 0.86 6.22 -2.39 -0.01 0.84 16 47 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.03 0.81 7.39 -2.39 -0.02 0.80 16 55 H 0.06 1.40 7.55 -2.39 -0.02 1.38 16 Total: -1.00 -69.16 411.18 4.02 -65.14 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.84 Total: 14.76 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.59 Total: 12.09 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -4.57 Total: -105.27 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.87 Total: -31.92 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -69.16 4.02 -65.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714903472.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.639 kcal (2) G-P(sol) polarization free energy of solvation -69.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds