Wall clock time and date at job start Tue Mar 31 2020 22:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 113.99879 * 2 1 4 4 H 1.09004 * 109.47197 * 9.75019 * 3 2 1 5 5 C 1.50697 * 109.47468 * 129.75482 * 3 2 1 6 6 O 1.21285 * 119.99850 * 12.02118 * 5 3 2 7 7 N 1.34774 * 120.00484 * 192.01941 * 5 3 2 8 8 C 1.47022 * 125.64527 * 354.69741 * 7 5 3 9 9 C 1.54322 * 107.26879 * 180.99840 * 8 7 5 10 10 C 1.55162 * 102.94523 * 22.19227 * 9 8 7 11 11 H 1.09005 * 111.00245 * 82.60756 * 10 9 8 12 12 C 1.52993 * 111.00519 * 206.42012 * 10 9 8 13 13 N 1.46491 * 109.47485 * 290.41477 * 12 10 9 14 14 C 1.46507 * 119.99815 * 90.00398 * 13 12 10 15 15 C 1.36940 * 120.00385 * 270.00066 * 13 12 10 16 16 H 1.07992 * 119.99965 * 334.69389 * 15 13 12 17 17 C 1.38814 * 119.99986 * 154.69250 * 15 13 12 18 18 N 1.31616 * 119.99943 * 3.98557 * 17 15 13 19 19 Si 1.86799 * 119.99840 * 183.98937 * 17 15 13 20 20 H 1.48503 * 109.47201 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47307 * 119.99664 * 19 17 15 22 22 H 1.48501 * 109.46788 * 240.00043 * 19 17 15 23 23 C 1.47464 * 125.62868 * 174.66517 * 7 5 3 24 24 C 1.53005 * 109.46943 * 249.75548 * 3 2 1 25 25 C 1.52995 * 109.47333 * 64.11643 * 24 3 2 26 26 C 1.53000 * 109.47011 * 180.02562 * 25 24 3 27 27 C 1.52995 * 109.47133 * 60.00192 * 26 25 24 28 28 C 1.52996 * 109.47345 * 299.99618 * 27 26 25 29 29 C 1.53005 * 109.47015 * 60.00178 * 28 27 26 30 30 H 1.09003 * 109.46716 * 307.68752 * 1 2 3 31 31 H 1.08997 * 109.47476 * 67.68706 * 1 2 3 32 32 H 1.08999 * 109.47086 * 187.69386 * 1 2 3 33 33 H 1.09001 * 109.88467 * 61.58265 * 8 7 5 34 34 H 1.08999 * 109.87912 * 300.41303 * 8 7 5 35 35 H 1.08996 * 110.72482 * 263.82842 * 9 8 7 36 36 H 1.09003 * 110.87289 * 140.62387 * 9 8 7 37 37 H 1.09005 * 109.47043 * 170.41245 * 12 10 9 38 38 H 1.09000 * 109.47094 * 50.42361 * 12 10 9 39 39 H 1.09004 * 109.46737 * 264.85648 * 14 13 12 40 40 H 1.08994 * 109.47576 * 144.86059 * 14 13 12 41 41 H 1.08998 * 109.47281 * 24.85467 * 14 13 12 42 42 H 0.97005 * 119.99789 * 180.02562 * 18 17 15 43 43 H 1.08998 * 110.40611 * 37.10894 * 23 7 5 44 44 H 1.08998 * 110.35062 * 274.77057 * 23 7 5 45 45 H 1.09004 * 109.47110 * 184.12106 * 24 3 2 46 46 H 1.08994 * 109.47458 * 300.00276 * 25 24 3 47 47 H 1.09002 * 109.47036 * 60.00427 * 25 24 3 48 48 H 1.09003 * 109.47508 * 299.99871 * 26 25 24 49 49 H 1.09007 * 109.47273 * 180.02562 * 26 25 24 50 50 H 1.09005 * 109.47016 * 179.97438 * 27 26 25 51 51 H 1.08994 * 109.47405 * 60.00282 * 27 26 25 52 52 H 1.09004 * 109.47354 * 300.00651 * 28 27 26 53 53 H 1.08998 * 109.47562 * 180.02562 * 28 27 26 54 54 H 1.08999 * 109.47242 * 180.02562 * 29 28 27 55 55 H 1.08994 * 109.47074 * 59.99697 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2327 2.0493 0.1740 5 6 3.0446 1.3948 1.0923 6 8 3.4206 0.3885 1.6552 7 7 3.5519 2.5930 1.4436 8 6 3.2702 3.8720 0.7754 9 6 4.0873 4.9594 1.5044 10 6 5.2200 4.1458 2.1843 11 1 6.0323 3.9473 1.4851 12 6 5.7377 4.8636 3.4323 13 7 6.4670 6.0702 3.0344 14 6 5.7560 7.3437 2.8963 15 6 7.8133 6.0078 2.7916 16 1 8.4112 5.2394 3.2588 17 6 8.4094 6.9324 1.9450 18 7 7.6965 7.9156 1.4378 19 14 10.2234 6.7810 1.5257 20 1 10.7949 5.5989 2.2196 21 1 10.3803 6.6177 0.0581 22 1 10.9373 8.0062 1.9666 23 6 4.4808 2.8379 2.5624 24 6 2.6736 1.5683 -1.3534 25 6 1.6074 1.5792 -2.4506 26 6 2.2709 1.8414 -3.8040 27 6 3.2903 0.7381 -4.0945 28 6 4.3566 0.7271 -2.9975 29 6 3.6931 0.4649 -1.6439 30 1 -0.3633 0.6283 0.8133 31 1 -0.3634 0.3901 -0.9507 32 1 -0.3633 -1.0184 0.1376 33 1 2.2064 4.0995 0.8436 34 1 3.5738 3.8186 -0.2701 35 1 3.4754 5.4664 2.2504 36 1 4.5001 5.6762 0.7945 37 1 6.4053 4.2003 3.9823 38 1 4.8964 5.1404 4.0675 39 1 5.4712 7.4896 1.8543 40 1 6.4063 8.1591 3.2127 41 1 4.8615 7.3298 3.5189 42 1 8.1131 8.5615 0.8459 43 1 5.1894 2.0149 2.6552 44 1 3.9277 2.9701 3.4923 45 1 3.1796 2.5335 -1.3287 46 1 1.1015 0.6141 -2.4753 47 1 0.8809 2.3650 -2.2434 48 1 2.7771 2.8065 -3.7797 49 1 1.5112 1.8497 -4.5857 50 1 3.7627 0.9247 -5.0590 51 1 2.7842 -0.2269 -4.1190 52 1 4.8628 1.6922 -2.9730 53 1 5.0831 -0.0586 -3.2047 54 1 4.4527 0.4575 -0.8623 55 1 3.1869 -0.5001 -1.6684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714903473.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:32 Heat of formation + Delta-G solvation = -89.485385 kcal Electronic energy + Delta-G solvation = -31675.837980 eV Core-core repulsion = 27712.139917 eV Total energy + Delta-G solvation = -3963.698063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65883 -39.87495 -38.73699 -37.89088 -37.04972 -34.08584 -33.00835 -31.88415 -31.67671 -30.41647 -28.70915 -27.92229 -27.39128 -26.18302 -24.35779 -23.49171 -22.93524 -22.53844 -21.20534 -20.73192 -20.31810 -18.68715 -18.21732 -17.77772 -17.24095 -17.00471 -16.50415 -16.39329 -15.80270 -15.66240 -15.41992 -15.20464 -14.98732 -14.88230 -14.76502 -14.51642 -14.29696 -14.17021 -13.76338 -13.51073 -13.37037 -13.16126 -13.12398 -13.04884 -12.81212 -12.77173 -12.56331 -12.46221 -12.42272 -12.12028 -12.05411 -11.97336 -11.91792 -11.74199 -11.57752 -11.47201 -11.33383 -11.27652 -11.18001 -10.87439 -10.58033 -10.29771 -9.67405 -8.70469 -7.81433 -5.27701 1.44485 1.47535 1.50055 1.55921 1.76117 2.51005 2.88813 3.30690 3.36121 3.57816 3.61858 3.72664 3.74165 3.85834 3.93205 4.02499 4.16321 4.26169 4.29466 4.36413 4.38106 4.41853 4.51517 4.54371 4.56499 4.61397 4.63216 4.63727 4.66524 4.73591 4.83430 4.86061 4.91037 4.96543 4.98717 5.02615 5.09622 5.13632 5.22855 5.26048 5.27226 5.28532 5.35066 5.35905 5.39381 5.48815 5.51917 5.58285 5.68533 5.87921 6.07490 6.39170 6.49363 7.08922 7.22022 7.93388 8.35507 9.21400 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.003032 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.458688 B = 9233.408381 C =10253.676707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.380 6.380 3 C 0.089 3.911 4 H 0.114 0.886 5 C 0.515 3.485 6 O -0.576 6.576 7 N -0.614 5.614 8 C 0.100 3.900 9 C -0.107 4.107 10 C -0.107 4.107 11 H 0.049 0.951 12 C 0.163 3.837 13 N -0.617 5.617 14 C 0.183 3.817 15 C -0.260 4.260 16 H 0.065 0.935 17 C -0.044 4.044 18 N -0.932 5.932 19 Si 0.958 3.042 20 H -0.272 1.272 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.116 3.884 24 C -0.095 4.095 25 C -0.106 4.106 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.119 4.119 29 C -0.104 4.104 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.008 0.992 40 H 0.018 0.982 41 H 0.023 0.977 42 H 0.246 0.754 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.061 0.939 49 H 0.079 0.921 50 H 0.068 0.932 51 H 0.063 0.937 52 H 0.055 0.945 53 H 0.058 0.942 54 H 0.025 0.975 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.924 -10.922 -9.083 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.298 6.298 3 C 0.028 3.972 4 H 0.131 0.869 5 C 0.305 3.695 6 O -0.455 6.455 7 N -0.349 5.349 8 C -0.022 4.022 9 C -0.145 4.145 10 C -0.129 4.129 11 H 0.068 0.932 12 C 0.036 3.964 13 N -0.340 5.340 14 C 0.039 3.961 15 C -0.391 4.391 16 H 0.082 0.918 17 C -0.239 4.239 18 N -0.579 5.579 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.007 4.007 24 C -0.113 4.113 25 C -0.144 4.144 26 C -0.155 4.155 27 C -0.154 4.154 28 C -0.157 4.157 29 C -0.141 4.141 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.026 0.974 40 H 0.037 0.963 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.098 0.902 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.074 0.926 53 H 0.077 0.923 54 H 0.044 0.956 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.618 -11.564 -8.890 23.651 hybrid contribution 1.520 0.253 -0.070 1.542 sum -17.098 -11.311 -8.960 22.373 Atomic orbital electron populations 1.23194 0.78992 1.04007 1.01533 1.88002 1.21595 1.25560 1.94646 1.22045 0.94777 0.87545 0.92847 0.86889 1.21083 0.82984 0.81407 0.84064 1.90669 1.62032 1.35997 1.56802 1.48642 1.46457 1.07410 1.32402 1.22356 1.01229 0.81668 0.96898 1.22474 0.95809 0.96409 0.99830 1.22873 0.96579 0.93574 0.99918 0.93202 1.20843 0.94916 0.87443 0.93188 1.44085 1.04811 1.04361 1.80737 1.20610 0.92227 0.86644 0.96640 1.19506 0.85191 1.13477 1.20897 0.91756 1.25741 1.01594 0.98390 0.98144 1.70235 1.35679 1.16061 1.35917 0.85341 0.81245 0.77354 0.77391 1.19658 1.21917 1.21872 1.22221 0.91648 0.97016 0.89790 1.21610 0.97371 0.99693 0.92668 1.21573 0.96628 1.02882 0.93296 1.21529 0.98477 0.98562 0.96912 1.21519 0.96496 0.99577 0.97772 1.21537 0.98207 1.01359 0.94591 1.21364 0.97099 0.99086 0.96594 0.93181 0.91522 0.88683 0.88304 0.90615 0.89831 0.91613 0.94007 0.91741 0.97361 0.96286 0.95842 0.94385 0.92670 0.90130 0.89533 0.91194 0.89938 0.92002 0.90225 0.91335 0.91824 0.92643 0.92341 0.95589 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.50 113.37 1.19 1.45 16 2 O -0.38 -8.97 8.62 -130.22 -1.12 -10.10 16 3 C 0.09 1.94 1.74 29.85 0.05 1.99 16 4 H 0.11 1.76 7.34 -2.39 -0.02 1.74 16 5 C 0.52 15.63 6.11 87.66 0.54 16.16 16 6 O -0.58 -22.83 16.77 15.71 0.26 -22.56 16 7 N -0.61 -17.26 3.33 -811.69 -2.70 -19.96 16 8 C 0.10 2.27 6.09 86.73 0.53 2.80 16 9 C -0.11 -3.09 5.62 31.78 0.18 -2.91 16 10 C -0.11 -3.68 3.27 -9.40 -0.03 -3.71 16 11 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 12 C 0.16 6.16 5.20 86.38 0.45 6.61 16 13 N -0.62 -29.45 2.88 -726.95 -2.09 -31.54 16 14 C 0.18 8.56 8.26 127.77 1.05 9.62 16 15 C -0.26 -14.03 9.67 84.03 0.81 -13.22 16 16 H 0.06 3.45 7.83 -2.91 -0.02 3.42 16 17 C -0.04 -2.39 5.38 84.86 0.46 -1.93 16 18 N -0.93 -53.12 10.13 21.65 0.22 -52.90 16 19 Si 0.96 44.83 29.56 68.60 2.03 46.86 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 C 0.12 3.58 6.40 86.85 0.56 4.13 16 24 C -0.09 -1.85 1.95 -10.79 -0.02 -1.87 16 25 C -0.11 -1.46 4.66 30.59 0.14 -1.31 16 26 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 27 C -0.12 -1.81 5.92 30.59 0.18 -1.63 16 28 C -0.12 -2.45 5.92 30.59 0.18 -2.27 16 29 C -0.10 -2.52 4.82 30.60 0.15 -2.37 16 30 H 0.05 0.63 8.00 -2.39 -0.02 0.61 16 31 H 0.07 0.65 6.96 -2.39 -0.02 0.63 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.59 8.03 -2.39 -0.02 1.57 16 34 H 0.08 1.64 5.89 -2.39 -0.01 1.63 16 35 H 0.08 2.19 7.96 -2.39 -0.02 2.17 16 36 H 0.07 2.22 7.82 -2.39 -0.02 2.20 16 37 H 0.04 1.60 8.04 -2.38 -0.02 1.58 16 38 H 0.06 2.12 7.76 -2.39 -0.02 2.10 16 39 H 0.01 0.40 7.14 -2.38 -0.02 0.39 16 40 H 0.02 0.98 7.00 -2.39 -0.02 0.96 16 41 H 0.02 0.91 7.83 -2.39 -0.02 0.90 16 42 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 43 H 0.05 1.90 7.99 -2.39 -0.02 1.88 16 44 H 0.08 2.23 8.04 -2.39 -0.02 2.22 16 45 H 0.09 1.72 5.41 -2.38 -0.01 1.71 16 46 H 0.07 0.97 6.81 -2.39 -0.02 0.96 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 50 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 53 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 54 H 0.03 0.79 7.35 -2.39 -0.02 0.78 16 55 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 Total: -1.00 -69.67 412.42 4.03 -65.64 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.84 Total: 14.39 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.60 Total: 10.17 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -4.57 Total: -104.40 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.86 Total: -32.66 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -69.67 4.03 -65.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714903473.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.841 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds