Wall clock time and date at job start Tue Mar 31 2020 22:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 114.00027 * 2 1 4 4 H 1.09007 * 109.46777 * 30.00223 * 3 2 1 5 5 C 1.50691 * 109.47432 * 270.00241 * 3 2 1 6 6 O 1.21285 * 119.99869 * 326.14518 * 5 3 2 7 7 N 1.34779 * 120.00454 * 146.14452 * 5 3 2 8 8 C 1.47027 * 125.64366 * 4.15830 * 7 5 3 9 9 C 1.54309 * 107.27396 * 180.96697 * 8 7 5 10 10 C 1.55157 * 102.86615 * 22.52653 * 9 8 7 11 11 H 1.08997 * 111.00381 * 82.37031 * 10 9 8 12 12 C 1.52993 * 111.03892 * 206.21641 * 10 9 8 13 13 N 1.46503 * 109.47300 * 287.21146 * 12 10 9 14 14 C 1.46497 * 119.99856 * 89.99590 * 13 12 10 15 15 C 1.36934 * 119.99916 * 270.00581 * 13 12 10 16 16 H 1.07998 * 120.00298 * 23.97663 * 15 13 12 17 17 C 1.38815 * 119.99580 * 203.97618 * 15 13 12 18 18 N 1.31619 * 120.00303 * 11.20991 * 17 15 13 19 19 Si 1.86806 * 119.99664 * 191.20953 * 17 15 13 20 20 H 1.48506 * 109.46880 * 90.00339 * 19 17 15 21 21 H 1.48499 * 109.46883 * 209.99871 * 19 17 15 22 22 H 1.48500 * 109.47181 * 330.00016 * 19 17 15 23 23 C 1.47421 * 125.65306 * 184.46208 * 7 5 3 24 24 C 1.53002 * 109.46817 * 149.99930 * 3 2 1 25 25 C 1.53006 * 109.46951 * 181.70950 * 24 3 2 26 26 C 1.53002 * 109.46951 * 179.97438 * 25 24 3 27 27 C 1.52998 * 109.47009 * 300.00168 * 26 25 24 28 28 C 1.52993 * 109.47472 * 59.99978 * 27 26 25 29 29 C 1.52998 * 109.47353 * 299.99909 * 28 27 26 30 30 H 1.09000 * 109.47179 * 300.00189 * 1 2 3 31 31 H 1.08998 * 109.46840 * 59.99489 * 1 2 3 32 32 H 1.08997 * 109.47004 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.87994 * 300.51476 * 8 7 5 34 34 H 1.08999 * 109.88142 * 61.67868 * 8 7 5 35 35 H 1.09009 * 110.92621 * 264.11156 * 9 8 7 36 36 H 1.08994 * 110.74212 * 140.85671 * 9 8 7 37 37 H 1.08997 * 109.47323 * 47.21035 * 12 10 9 38 38 H 1.09008 * 109.47246 * 167.21435 * 12 10 9 39 39 H 1.09003 * 109.47196 * 87.75504 * 14 13 12 40 40 H 1.09004 * 109.47475 * 207.75213 * 14 13 12 41 41 H 1.09005 * 109.47320 * 327.75895 * 14 13 12 42 42 H 0.96999 * 120.00239 * 179.97438 * 18 17 15 43 43 H 1.08998 * 110.37129 * 274.67797 * 23 7 5 44 44 H 1.09007 * 110.35995 * 37.00021 * 23 7 5 45 45 H 1.08999 * 109.47111 * 61.70895 * 24 3 2 46 46 H 1.08993 * 109.46977 * 299.99969 * 25 24 3 47 47 H 1.09004 * 109.46626 * 60.00352 * 25 24 3 48 48 H 1.09000 * 109.46671 * 179.97438 * 26 25 24 49 49 H 1.08999 * 109.47111 * 59.99945 * 26 25 24 50 50 H 1.08999 * 109.47002 * 299.99844 * 27 26 25 51 51 H 1.09002 * 109.47037 * 180.02562 * 27 26 25 52 52 H 1.09000 * 109.47300 * 179.97438 * 28 27 26 53 53 H 1.08999 * 109.47117 * 59.99936 * 28 27 26 54 54 H 1.08999 * 109.47032 * 300.00079 * 29 28 27 55 55 H 1.09006 * 109.47249 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2146 1.7645 -1.4207 6 8 2.4968 0.9599 -2.2832 7 7 2.0836 3.0690 -1.7330 8 6 1.8312 4.1576 -0.7774 9 6 1.7333 5.4663 -1.5892 10 6 1.3642 4.9646 -3.0102 11 1 0.2931 4.7801 -3.0934 12 6 1.8324 5.9527 -4.0803 13 7 0.9783 7.1427 -4.0535 14 6 1.3317 8.2788 -3.1988 15 6 -0.1505 7.1929 -4.8272 16 1 -0.6287 6.2781 -5.1446 17 6 -0.6800 8.4197 -5.2033 18 7 0.0121 9.5224 -5.0100 19 14 -2.3750 8.5055 -5.9840 20 1 -3.4010 8.6681 -4.9228 21 1 -2.4345 9.6635 -6.9117 22 1 -2.6367 7.2532 -6.7379 23 6 2.1635 3.6400 -3.0898 24 6 3.3590 1.2632 0.7213 25 6 3.9616 2.6691 0.7587 26 6 5.3100 2.6269 1.4805 27 6 5.1075 2.1206 2.9100 28 6 4.5049 0.7148 2.8727 29 6 3.1566 0.7569 2.1509 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.8958 3.9766 -0.2480 34 1 2.6548 4.2253 -0.0666 35 1 2.6896 5.9894 -1.6012 36 1 0.9484 6.1095 -1.1913 37 1 2.8643 6.2417 -3.8815 38 1 1.7694 5.4823 -5.0617 39 1 1.9971 8.9494 -3.7426 40 1 0.4264 8.8161 -2.9158 41 1 1.8345 7.9164 -2.3022 42 1 -0.3577 10.3796 -5.2733 43 1 3.2013 3.8387 -3.3573 44 1 1.7070 2.9643 -3.8131 45 1 4.0342 0.5925 0.1901 46 1 4.1054 3.0299 -0.2597 47 1 3.2863 3.3398 1.2900 48 1 5.7395 3.6284 1.5067 49 1 5.9854 1.9561 0.9497 50 1 4.4321 2.7914 3.4408 51 1 6.0681 2.0910 3.4244 52 1 4.3611 0.3539 3.8911 53 1 5.1804 0.0440 2.3418 54 1 2.4811 1.4278 2.6817 55 1 2.7274 -0.2448 2.1238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714903474.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:36 Heat of formation + Delta-G solvation = -89.699219 kcal Electronic energy + Delta-G solvation = -31464.484086 eV Core-core repulsion = 27500.776750 eV Total energy + Delta-G solvation = -3963.707336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74729 -39.74327 -38.85161 -38.04742 -37.07534 -34.12830 -33.09459 -31.96672 -31.64900 -30.40685 -28.56305 -27.93987 -27.53955 -26.29174 -24.21454 -23.61328 -22.91436 -22.57784 -21.22738 -20.78782 -20.18413 -18.69788 -18.40941 -17.80641 -17.49816 -16.97734 -16.57090 -16.39266 -15.68476 -15.55367 -15.45013 -15.23876 -15.05315 -14.95435 -14.75532 -14.58728 -14.31112 -14.08671 -13.69032 -13.56828 -13.49077 -13.21316 -13.03998 -12.95926 -12.85850 -12.78962 -12.56650 -12.51845 -12.44826 -12.24630 -12.00627 -11.92848 -11.88484 -11.76334 -11.64124 -11.58906 -11.40913 -11.26153 -11.10799 -10.92780 -10.60119 -10.35425 -9.69013 -8.71642 -7.82877 -5.30088 1.42544 1.46206 1.47052 1.55544 1.82084 2.51066 2.66468 3.30841 3.31712 3.60700 3.66603 3.70475 3.74007 3.89884 3.93304 3.96898 4.14941 4.28010 4.29993 4.35310 4.37889 4.43216 4.45227 4.47518 4.54503 4.59449 4.61938 4.62970 4.66441 4.77034 4.77859 4.82320 4.86854 4.96407 5.01752 5.02970 5.10624 5.16770 5.21714 5.23778 5.26620 5.28806 5.30731 5.38991 5.41109 5.47849 5.50849 5.58822 5.63882 5.76834 5.94449 6.36328 6.46429 7.04510 7.18748 7.91108 8.33621 9.21213 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017155 B = 0.002611 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.784136 B =10722.081260 C =11605.252856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.378 6.378 3 C 0.089 3.911 4 H 0.104 0.896 5 C 0.501 3.499 6 O -0.581 6.581 7 N -0.610 5.610 8 C 0.087 3.913 9 C -0.112 4.112 10 C -0.106 4.106 11 H 0.061 0.939 12 C 0.162 3.838 13 N -0.614 5.614 14 C 0.177 3.823 15 C -0.258 4.258 16 H 0.065 0.935 17 C -0.052 4.052 18 N -0.938 5.938 19 Si 0.964 3.036 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.273 1.273 23 C 0.115 3.885 24 C -0.071 4.071 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.118 4.118 29 C -0.103 4.103 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.037 0.963 39 H -0.010 1.010 40 H 0.024 0.976 41 H 0.039 0.961 42 H 0.248 0.752 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.051 0.949 50 H 0.073 0.927 51 H 0.068 0.932 52 H 0.075 0.925 53 H 0.052 0.948 54 H 0.077 0.923 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 -15.158 20.802 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.295 6.295 3 C 0.027 3.973 4 H 0.122 0.878 5 C 0.290 3.710 6 O -0.460 6.460 7 N -0.344 5.344 8 C -0.034 4.034 9 C -0.149 4.149 10 C -0.127 4.127 11 H 0.080 0.920 12 C 0.035 3.965 13 N -0.337 5.337 14 C 0.032 3.968 15 C -0.388 4.388 16 H 0.083 0.917 17 C -0.247 4.247 18 N -0.585 5.585 19 Si 0.793 3.207 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.198 1.198 23 C -0.009 4.009 24 C -0.090 4.090 25 C -0.159 4.159 26 C -0.154 4.154 27 C -0.155 4.155 28 C -0.156 4.156 29 C -0.140 4.140 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.008 0.992 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.109 0.891 48 H 0.092 0.908 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.087 0.913 52 H 0.094 0.906 53 H 0.071 0.929 54 H 0.096 0.904 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.358 -15.677 20.341 26.715 hybrid contribution -1.235 0.514 -1.401 1.937 sum 6.123 -15.163 18.940 25.023 Atomic orbital electron populations 1.23075 0.79450 1.04396 1.00590 1.87977 1.21358 1.25863 1.94306 1.22267 0.98491 0.86498 0.89996 0.87795 1.21685 0.76380 0.80490 0.92465 1.90669 1.49441 1.53861 1.52060 1.48741 1.69924 1.06307 1.09468 1.22652 1.03010 0.85366 0.92397 1.22589 1.02816 0.95860 0.93672 1.22841 0.99087 0.93470 0.97343 0.92025 1.20720 0.93089 0.86769 0.95899 1.44047 1.26047 1.15100 1.48501 1.20577 0.97308 0.88262 0.90618 1.19462 1.02069 0.92072 1.25232 0.91719 1.25737 1.02159 0.95940 1.00844 1.70214 1.37586 0.97731 1.53006 0.85313 0.80519 0.76978 0.77902 1.21150 1.22262 1.19768 1.22169 1.00438 0.94100 0.84157 1.21141 0.92248 0.98619 0.96984 1.21870 0.98255 0.94990 1.00774 1.21500 0.95927 1.01748 0.96227 1.21548 1.01399 0.96449 0.96087 1.21532 0.95986 0.97389 1.00665 1.21467 0.98277 1.01720 0.92564 0.91070 0.95505 0.87806 0.90072 0.87762 0.89925 0.90171 0.92731 0.94497 0.99193 0.95684 0.94269 0.94302 0.90925 0.92702 0.92356 0.92763 0.89122 0.90751 0.93007 0.90863 0.91341 0.90629 0.92886 0.90393 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.81 113.37 1.23 1.60 16 2 O -0.38 -9.04 9.35 -132.58 -1.24 -10.28 16 3 C 0.09 1.89 1.78 29.85 0.05 1.95 16 4 H 0.10 1.65 6.58 -2.38 -0.02 1.64 16 5 C 0.50 14.52 6.09 87.65 0.53 15.06 16 6 O -0.58 -22.52 17.09 13.35 0.23 -22.29 16 7 N -0.61 -15.86 2.90 -811.82 -2.35 -18.21 16 8 C 0.09 1.69 5.65 86.72 0.49 2.18 16 9 C -0.11 -2.73 5.02 31.78 0.16 -2.57 16 10 C -0.11 -3.30 3.25 -9.40 -0.03 -3.33 16 11 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 12 C 0.16 6.16 5.18 86.38 0.45 6.61 16 13 N -0.61 -29.31 2.89 -726.93 -2.10 -31.41 16 14 C 0.18 8.23 8.82 127.77 1.13 9.35 16 15 C -0.26 -13.86 9.65 84.03 0.81 -13.05 16 16 H 0.07 3.43 7.85 -2.91 -0.02 3.41 16 17 C -0.05 -2.87 5.09 84.86 0.43 -2.44 16 18 N -0.94 -54.78 10.72 21.65 0.23 -54.55 16 19 Si 0.96 44.78 29.57 68.60 2.03 46.80 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 C 0.11 3.38 6.36 86.86 0.55 3.93 16 24 C -0.07 -1.28 1.97 -10.79 -0.02 -1.30 16 25 C -0.12 -1.82 3.41 30.60 0.10 -1.71 16 26 C -0.12 -1.52 5.92 30.59 0.18 -1.33 16 27 C -0.12 -1.22 5.92 30.59 0.18 -1.04 16 28 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 29 C -0.10 -1.40 5.04 30.59 0.15 -1.24 16 30 H 0.07 0.87 8.08 -2.39 -0.02 0.86 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.33 7.65 -2.39 -0.02 1.31 16 34 H 0.10 1.53 4.26 -2.39 -0.01 1.52 16 35 H 0.08 1.91 7.60 -2.38 -0.02 1.89 16 36 H 0.08 2.07 8.03 -2.39 -0.02 2.05 16 37 H 0.05 1.90 7.90 -2.39 -0.02 1.89 16 38 H 0.04 1.48 8.04 -2.38 -0.02 1.46 16 39 H -0.01 -0.53 7.74 -2.39 -0.02 -0.55 16 40 H 0.02 1.27 6.85 -2.39 -0.02 1.26 16 41 H 0.04 1.46 6.36 -2.38 -0.02 1.44 16 42 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 43 H 0.07 2.06 8.04 -2.39 -0.02 2.04 16 44 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.01 6.02 -2.39 -0.01 1.00 16 47 H 0.09 1.00 6.80 -2.39 -0.02 0.98 16 48 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 50 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 54 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 55 H 0.06 1.00 7.64 -2.38 -0.02 0.98 16 Total: -1.00 -70.72 411.13 4.21 -66.50 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.84 Total: 11.97 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 6.58 Total: 11.46 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -4.22 Total: -104.17 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.01 Total: -32.57 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -70.72 4.21 -66.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714903474.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.196 kcal (2) G-P(sol) polarization free energy of solvation -70.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds