Wall clock time and date at job start Tue Mar 31 2020 22:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00393 * 2 1 4 4 C 1.52998 * 109.47339 * 150.00073 * 3 2 1 5 5 C 1.53001 * 109.47072 * 59.99915 * 4 3 2 6 6 C 1.53007 * 109.46768 * 60.00467 * 5 4 3 7 7 C 1.53002 * 109.47088 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46873 * 184.99971 * 7 6 5 9 9 O 1.21274 * 120.00292 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99660 * 179.97438 * 8 7 6 11 11 C 1.47029 * 125.65132 * 0.02854 * 10 8 7 12 12 C 1.54319 * 107.27302 * 178.90156 * 11 10 8 13 13 C 1.55162 * 102.94394 * 337.80577 * 12 11 10 14 14 H 1.09003 * 110.99896 * 277.39485 * 13 12 11 15 15 C 1.52997 * 111.00795 * 153.57817 * 13 12 11 16 16 N 1.46496 * 109.47257 * 66.44920 * 15 13 12 17 17 C 1.46503 * 119.99496 * 90.00204 * 16 15 13 18 18 C 1.36934 * 120.00258 * 270.00558 * 16 15 13 19 19 H 1.07994 * 120.00172 * 22.73597 * 18 16 15 20 20 C 1.38813 * 119.99981 * 202.74037 * 18 16 15 21 21 N 1.31623 * 119.99820 * 13.36828 * 20 18 16 22 22 Si 1.86800 * 120.00130 * 193.36699 * 20 18 16 23 23 H 1.48496 * 109.47101 * 60.00165 * 22 20 18 24 24 H 1.48505 * 109.47022 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46756 * 299.99825 * 22 20 18 26 26 C 1.47430 * 125.64881 * 179.71287 * 10 8 7 27 27 C 1.53002 * 109.46791 * 299.99935 * 6 5 4 28 28 C 1.52992 * 109.47234 * 59.99898 * 27 6 5 29 29 H 1.08995 * 109.47435 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46895 * 299.99657 * 1 2 3 31 31 H 1.09001 * 109.46906 * 59.99387 * 1 2 3 32 32 H 1.09004 * 109.47104 * 30.00313 * 3 2 1 33 33 H 1.08997 * 109.47189 * 300.00354 * 4 3 2 34 34 H 1.08999 * 109.47594 * 180.02562 * 4 3 2 35 35 H 1.08999 * 109.47198 * 300.00594 * 5 4 3 36 36 H 1.08992 * 109.47340 * 180.02562 * 5 4 3 37 37 H 1.08999 * 109.47157 * 60.00102 * 6 5 4 38 38 H 1.09004 * 109.46760 * 304.99747 * 7 6 5 39 39 H 1.08998 * 109.46982 * 64.99584 * 7 6 5 40 40 H 1.08996 * 109.87717 * 298.31710 * 11 10 8 41 41 H 1.08993 * 109.88163 * 59.48108 * 11 10 8 42 42 H 1.08999 * 110.72222 * 96.16728 * 12 11 10 43 43 H 1.08995 * 110.71956 * 219.44143 * 12 11 10 44 44 H 1.08992 * 109.47281 * 186.45507 * 15 13 12 45 45 H 1.09006 * 109.46842 * 306.45344 * 15 13 12 46 46 H 1.08997 * 109.47409 * 95.13511 * 17 16 15 47 47 H 1.09004 * 109.47117 * 215.13130 * 17 16 15 48 48 H 1.08996 * 109.47458 * 335.12433 * 17 16 15 49 49 H 0.97001 * 119.99602 * 180.02562 * 21 20 18 50 50 H 1.09001 * 110.36146 * 323.00831 * 26 10 8 51 51 H 1.09000 * 110.36612 * 85.32619 * 26 10 8 52 52 H 1.09000 * 109.46757 * 180.02562 * 27 6 5 53 53 H 1.09002 * 109.47110 * 299.99592 * 27 6 5 54 54 H 1.09004 * 109.47432 * 179.97438 * 28 27 6 55 55 H 1.09001 * 109.47269 * 60.00378 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2631 0.7212 5 6 4.2927 0.2890 0.0000 6 6 4.5002 0.7551 -1.4426 7 6 5.4334 -0.2193 -2.1641 8 6 5.7358 0.3039 -3.5446 9 8 5.2522 1.3525 -3.9151 10 7 6.5438 -0.3936 -4.3675 11 6 7.1936 -1.6733 -4.0483 12 6 7.9936 -2.1046 -5.2955 13 6 7.2943 -1.3282 -6.4426 14 1 6.4024 -1.8542 -6.7831 15 6 8.2584 -1.0802 -7.6044 16 7 8.6133 -2.3585 -8.2258 17 6 7.8065 -2.8854 -9.3294 18 6 9.6990 -3.0608 -7.7753 19 1 10.0701 -2.8978 -6.7743 20 6 10.3227 -3.9823 -8.6052 21 7 10.0505 -3.9981 -9.8929 22 14 11.5483 -5.1998 -7.8946 23 1 10.8759 -6.0378 -6.8695 24 1 12.0686 -6.0692 -8.9803 25 1 12.6742 -4.4607 -7.2691 26 6 6.9171 -0.0031 -5.7392 27 6 3.1514 0.7974 -2.1637 28 6 2.2177 1.7713 -1.4424 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.3451 1.9993 0.5139 33 1 3.2112 0.9312 1.7488 34 1 3.8022 2.2589 0.7216 35 1 3.8493 -0.7067 -0.0001 36 1 5.2533 0.2586 0.5140 37 1 4.9436 1.7508 -1.4425 38 1 6.3617 -0.3174 -1.6012 39 1 4.9512 -1.1937 -2.2423 40 1 7.8678 -1.5455 -3.2014 41 1 6.4390 -2.4240 -3.8141 42 1 9.0376 -1.8040 -5.2070 43 1 7.9128 -3.1801 -5.4525 44 1 7.7795 -0.4376 -8.3431 45 1 9.1602 -0.5950 -7.2309 46 1 8.2578 -2.5979 -10.2790 47 1 7.7641 -3.9725 -9.2617 48 1 6.7974 -2.4780 -9.2685 49 1 10.4861 -4.6423 -10.4727 50 1 6.0725 0.4672 -6.2428 51 1 7.7731 0.6715 -5.7219 52 1 3.2993 1.1289 -3.1915 53 1 2.7081 -0.1984 -2.1638 54 1 1.2570 1.8018 -1.9565 55 1 2.6610 2.7671 -1.4424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714906248.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:11 Heat of formation + Delta-G solvation = -95.488464 kcal Electronic energy + Delta-G solvation = -30357.146765 eV Core-core repulsion = 26393.188389 eV Total energy + Delta-G solvation = -3963.958376 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.31316 -40.20757 -38.92972 -37.22865 -36.88693 -33.95163 -32.97255 -32.00254 -31.64373 -30.32770 -28.54315 -27.86726 -27.30298 -26.52808 -24.15895 -23.58695 -23.13488 -22.30098 -21.03223 -20.53960 -19.93537 -18.73613 -18.04108 -17.34593 -17.11798 -16.91051 -16.66656 -16.34986 -16.22013 -15.73902 -15.30100 -15.11222 -15.01182 -14.71360 -14.60202 -14.47673 -14.28483 -13.92659 -13.67757 -13.52736 -13.28644 -13.19297 -12.98554 -12.93665 -12.82740 -12.75870 -12.59891 -12.36959 -12.30311 -12.15413 -12.11180 -12.00073 -11.96592 -11.71347 -11.56292 -11.47325 -11.36825 -11.30161 -10.96146 -10.71237 -10.55306 -10.26965 -9.59321 -8.71224 -7.75709 -5.23864 1.50530 1.52475 1.58367 1.67784 2.05497 2.56011 2.94000 3.36968 3.44550 3.68807 3.77735 3.80172 3.81242 3.94387 4.00123 4.17717 4.21002 4.24066 4.36856 4.42116 4.46213 4.49944 4.51131 4.59897 4.61169 4.65248 4.66890 4.68855 4.73969 4.81686 4.86504 4.86776 4.87898 4.92984 4.95460 5.06689 5.08049 5.13545 5.16765 5.19436 5.31018 5.32231 5.33837 5.37442 5.44486 5.51773 5.52797 5.64060 5.70618 5.76096 6.36171 6.38887 6.60872 7.20599 7.21297 7.93246 8.38786 9.27960 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.001982 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.265975 B =14123.095297 C =14412.068928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.087 3.913 4 C -0.114 4.114 5 C -0.104 4.104 6 C -0.065 4.065 7 C -0.125 4.125 8 C 0.521 3.479 9 O -0.580 6.580 10 N -0.620 5.620 11 C 0.104 3.896 12 C -0.108 4.108 13 C -0.106 4.106 14 H 0.065 0.935 15 C 0.161 3.839 16 N -0.614 5.614 17 C 0.177 3.823 18 C -0.245 4.245 19 H 0.081 0.919 20 C -0.062 4.062 21 N -0.944 5.944 22 Si 0.964 3.036 23 H -0.276 1.276 24 H -0.302 1.302 25 H -0.275 1.275 26 C 0.117 3.883 27 C -0.109 4.109 28 C -0.137 4.137 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.002 0.998 47 H 0.015 0.985 48 H 0.026 0.974 49 H 0.244 0.756 50 H 0.062 0.938 51 H 0.067 0.933 52 H 0.050 0.950 53 H 0.054 0.946 54 H 0.057 0.943 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.702 9.103 24.019 30.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.030 3.970 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.084 4.084 7 C -0.165 4.165 8 C 0.312 3.688 9 O -0.461 6.461 10 N -0.354 5.354 11 C -0.018 4.018 12 C -0.146 4.146 13 C -0.128 4.128 14 H 0.083 0.917 15 C 0.035 3.965 16 N -0.337 5.337 17 C 0.031 3.969 18 C -0.375 4.375 19 H 0.099 0.901 20 C -0.256 4.256 21 N -0.592 5.592 22 Si 0.793 3.207 23 H -0.202 1.202 24 H -0.229 1.229 25 H -0.201 1.201 26 C -0.007 4.007 27 C -0.147 4.147 28 C -0.175 4.175 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.020 0.980 47 H 0.034 0.966 48 H 0.044 0.956 49 H 0.054 0.946 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.069 0.931 53 H 0.073 0.927 54 H 0.076 0.924 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.826 9.423 23.756 30.060 hybrid contribution 0.488 -0.598 -0.749 1.075 sum -15.338 8.825 23.007 29.025 Atomic orbital electron populations 1.22896 0.80566 1.03330 1.00325 1.87898 1.20353 1.28410 1.95078 1.22201 0.95433 0.84454 0.94917 1.21644 0.93515 1.00764 0.99248 1.21451 0.99796 0.99536 0.93412 1.20866 0.94442 0.98237 0.94851 1.21766 1.02658 1.01198 0.90839 1.21034 0.76676 0.83433 0.87700 1.90634 1.52956 1.24955 1.77570 1.48748 1.47658 1.23831 1.15114 1.22219 0.96651 0.84330 0.98574 1.22470 0.98912 1.00658 0.92543 1.22797 0.99033 0.94665 0.96285 0.91689 1.20735 0.96002 0.86793 0.92985 1.44083 1.30140 1.20644 1.38858 1.20513 0.90318 0.96056 0.89964 1.19531 1.05091 1.16505 0.96395 0.90086 1.25812 1.01022 1.03433 0.95355 1.70247 1.47167 1.38117 1.03647 0.85376 0.79286 0.79138 0.76888 1.20213 1.22904 1.20084 1.22070 0.99593 0.96911 0.82094 1.21476 0.94911 0.99304 0.98966 1.21971 0.99545 0.99429 0.96507 0.89101 0.93024 0.94213 0.91173 0.90487 0.89909 0.91636 0.90542 0.91825 0.86781 0.87852 0.89256 0.90158 0.91231 0.90860 0.93805 0.93277 0.97952 0.96630 0.95553 0.94643 0.91911 0.91459 0.93116 0.92749 0.92411 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 113.37 1.23 1.53 16 2 O -0.40 -6.83 9.00 -148.98 -1.34 -8.17 16 3 C 0.09 1.29 2.92 30.59 0.09 1.38 16 4 C -0.11 -1.46 5.66 30.59 0.17 -1.29 16 5 C -0.10 -1.49 5.06 30.60 0.15 -1.33 16 6 C -0.07 -1.21 1.84 -10.79 -0.02 -1.23 16 7 C -0.13 -2.29 4.37 29.85 0.13 -2.16 16 8 C 0.52 13.85 7.57 87.66 0.66 14.51 16 9 O -0.58 -19.55 14.22 -3.01 -0.04 -19.60 16 10 N -0.62 -16.27 3.33 -812.23 -2.70 -18.98 16 11 C 0.10 2.30 6.49 86.73 0.56 2.86 16 12 C -0.11 -3.12 5.14 31.78 0.16 -2.95 16 13 C -0.11 -3.38 3.28 -9.48 -0.03 -3.41 16 14 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.16 6.18 5.18 86.38 0.45 6.63 16 16 N -0.61 -29.47 2.87 -726.96 -2.09 -31.55 16 17 C 0.18 8.67 8.98 127.77 1.15 9.81 16 18 C -0.25 -12.64 8.98 84.03 0.75 -11.89 16 19 H 0.08 3.92 6.69 -2.91 -0.02 3.90 16 20 C -0.06 -3.39 5.09 84.86 0.43 -2.96 16 21 N -0.94 -55.65 10.72 21.65 0.23 -55.42 16 22 Si 0.96 43.92 29.57 68.60 2.03 45.95 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 26 C 0.12 3.40 6.37 86.78 0.55 3.95 16 27 C -0.11 -2.36 4.80 30.59 0.15 -2.21 16 28 C -0.14 -2.43 5.63 30.59 0.17 -2.25 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.48 8.09 -2.39 -0.02 0.46 16 31 H 0.04 0.47 7.87 -2.39 -0.02 0.45 16 32 H 0.07 0.83 7.79 -2.39 -0.02 0.81 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.04 7.68 -2.39 -0.02 1.03 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.34 7.96 -2.39 -0.02 1.32 16 38 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 2.10 7.39 -2.39 -0.02 2.09 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 45 H 0.05 1.88 8.00 -2.38 -0.02 1.86 16 46 H 0.00 0.12 7.34 -2.39 -0.02 0.10 16 47 H 0.01 0.80 7.33 -2.38 -0.02 0.78 16 48 H 0.03 1.10 8.03 -2.39 -0.02 1.08 16 49 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 50 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 51 H 0.07 1.94 8.03 -2.39 -0.02 1.92 16 52 H 0.05 1.40 5.95 -2.39 -0.01 1.39 16 53 H 0.05 1.23 7.68 -2.39 -0.02 1.21 16 54 H 0.06 1.02 7.87 -2.38 -0.02 1.00 16 55 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -66.76 416.88 3.68 -63.08 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.82 Total: 15.69 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.77 Total: 8.99 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.56 Total: -105.94 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -1.38 Total: -27.77 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -66.76 3.68 -63.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714906248.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.405 kcal (2) G-P(sol) polarization free energy of solvation -66.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds