Wall clock time and date at job start Tue Mar 31 2020 22:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00317 * 2 1 4 4 C 1.53006 * 109.46837 * 89.99377 * 3 2 1 5 5 C 1.53003 * 109.46799 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47559 * 300.01002 * 5 4 3 7 7 C 1.52997 * 109.47133 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47695 * 64.99479 * 7 6 5 9 9 O 1.21281 * 119.99652 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00398 * 179.97438 * 8 7 6 11 11 C 1.47015 * 125.64854 * 0.02986 * 10 8 7 12 12 C 1.54320 * 107.27506 * 181.02106 * 11 10 8 13 13 C 1.55158 * 102.94288 * 22.18814 * 12 11 10 14 14 H 1.08999 * 111.00408 * 82.61262 * 13 12 11 15 15 C 1.52999 * 111.00666 * 206.42917 * 13 12 11 16 16 N 1.46505 * 109.46922 * 293.54341 * 15 13 12 17 17 C 1.46496 * 119.99763 * 90.00020 * 16 15 13 18 18 C 1.36935 * 120.00061 * 270.00272 * 16 15 13 19 19 H 1.08009 * 120.00101 * 23.31650 * 18 16 15 20 20 C 1.38811 * 119.99919 * 203.31549 * 18 16 15 21 21 N 1.31614 * 120.00213 * 14.41859 * 20 18 16 22 22 Si 1.86798 * 119.99863 * 194.41379 * 20 18 16 23 23 H 1.48501 * 109.47365 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47015 * 120.00402 * 22 20 18 25 25 H 1.48499 * 109.47377 * 240.00027 * 22 20 18 26 26 C 1.47426 * 125.64666 * 179.71422 * 10 8 7 27 27 C 1.52998 * 109.47478 * 59.99478 * 6 5 4 28 28 C 1.52994 * 109.47314 * 209.99701 * 3 2 1 29 29 H 1.09005 * 109.47006 * 59.99705 * 1 2 3 30 30 H 1.09004 * 109.47679 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47364 * 300.00129 * 1 2 3 32 32 H 1.09003 * 109.46923 * 330.00318 * 3 2 1 33 33 H 1.08997 * 109.47588 * 300.00363 * 4 3 2 34 34 H 1.09003 * 109.46596 * 60.00740 * 4 3 2 35 35 H 1.08994 * 109.46940 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.46726 * 60.01084 * 5 4 3 37 37 H 1.09004 * 109.46826 * 299.99392 * 6 5 4 38 38 H 1.08997 * 109.47288 * 184.99530 * 7 6 5 39 39 H 1.09000 * 109.47139 * 304.99119 * 7 6 5 40 40 H 1.09007 * 109.88434 * 300.43834 * 11 10 8 41 41 H 1.09000 * 109.88980 * 61.44341 * 11 10 8 42 42 H 1.08997 * 110.72542 * 140.55169 * 12 11 10 43 43 H 1.09006 * 110.72226 * 263.82865 * 12 11 10 44 44 H 1.08996 * 109.47271 * 53.54702 * 15 13 12 45 45 H 1.09004 * 109.46794 * 173.54818 * 15 13 12 46 46 H 1.08997 * 109.46912 * 95.18811 * 17 16 15 47 47 H 1.09003 * 109.46981 * 215.18688 * 17 16 15 48 48 H 1.08998 * 109.47265 * 335.18587 * 17 16 15 49 49 H 0.97000 * 120.00503 * 180.02562 * 21 20 18 50 50 H 1.09002 * 110.36827 * 274.74758 * 26 10 8 51 51 H 1.09000 * 110.36747 * 37.07389 * 26 10 8 52 52 H 1.08997 * 109.47182 * 180.02562 * 27 6 5 53 53 H 1.09003 * 109.46550 * 60.00563 * 27 6 5 54 54 H 1.08993 * 109.47584 * 300.00142 * 28 3 2 55 55 H 1.09006 * 109.47190 * 60.00343 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2176 1.7713 1.4426 5 6 2.8405 3.1688 1.4426 6 6 4.1892 3.1260 0.7215 7 6 4.8124 4.5233 0.7221 8 6 5.1299 4.9313 2.1376 9 8 4.8817 4.1787 3.0557 10 7 5.6896 6.1324 2.3834 11 6 6.0408 7.1376 1.3697 12 6 6.6747 8.3336 2.1106 13 6 7.1621 7.6999 3.4404 14 1 8.1299 7.2156 3.3107 15 6 7.2199 8.7443 4.5569 16 7 8.2587 9.7307 4.2496 17 6 7.9241 10.9307 3.4788 18 6 9.5423 9.5308 4.6826 19 1 9.8881 8.5319 4.9043 20 6 10.3991 10.6120 4.8367 21 7 9.9178 11.8370 4.8461 22 14 12.2352 10.3285 5.0307 23 1 12.5185 8.8714 4.9861 24 1 12.9603 11.0073 3.9268 25 1 12.6866 10.8813 6.3329 26 6 6.0452 6.6585 3.7139 27 6 3.9818 2.6601 -0.7210 28 6 3.3589 1.2632 -0.7211 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.3450 1.9993 -0.5138 33 1 1.2568 1.8014 1.9564 34 1 2.8828 1.0774 1.9564 35 1 2.9886 3.5005 2.4702 36 1 2.1756 3.8629 0.9287 37 1 4.8542 2.4319 1.2355 38 1 5.7293 4.5125 0.1328 39 1 4.1099 5.2346 0.2878 40 1 6.7568 6.7174 0.6633 41 1 5.1439 7.4596 0.8405 42 1 7.5147 8.7366 1.5449 43 1 5.9308 9.1071 2.3020 44 1 6.2552 9.2453 4.6362 45 1 7.4532 8.2535 5.5018 46 1 7.7140 11.7541 4.1615 47 1 8.7642 11.1963 2.8370 48 1 7.0453 10.7348 2.8645 49 1 10.5165 12.5926 4.9534 50 1 5.1817 7.1374 4.1756 51 1 6.4213 5.8576 4.3504 52 1 4.9427 2.6292 -1.2346 53 1 3.3170 3.3543 -1.2349 54 1 4.0241 0.5693 -0.2074 55 1 3.2112 0.9313 -1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714906251.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:16 Heat of formation + Delta-G solvation = -98.793074 kcal Electronic energy + Delta-G solvation = -30003.842317 eV Core-core repulsion = 26039.740643 eV Total energy + Delta-G solvation = -3964.101675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.30470 -40.14124 -38.95737 -37.49695 -36.98092 -34.00238 -32.97615 -31.93267 -31.70605 -30.39616 -28.60750 -27.90031 -27.27977 -26.29719 -24.18786 -23.63776 -22.92875 -22.33467 -21.18607 -20.81228 -19.99364 -18.60932 -18.00216 -17.56498 -17.34413 -16.84605 -16.68904 -16.34711 -16.05541 -15.78779 -15.44445 -15.15377 -15.01047 -14.74908 -14.59254 -14.55625 -14.29781 -13.84262 -13.68769 -13.60351 -13.52178 -13.23269 -12.93474 -12.87625 -12.80467 -12.75362 -12.55563 -12.50840 -12.43040 -12.15802 -12.03508 -11.96073 -11.77103 -11.72402 -11.59474 -11.54488 -11.48992 -11.35239 -11.17934 -10.76102 -10.60575 -10.30784 -9.58815 -8.72264 -7.80512 -5.29042 1.45213 1.47606 1.57109 1.68792 2.05578 2.51915 2.83098 3.31622 3.44102 3.67595 3.74003 3.76871 3.81794 3.88013 4.00320 4.12280 4.17978 4.28942 4.36531 4.38030 4.46290 4.46995 4.50148 4.53659 4.56406 4.59605 4.61548 4.66450 4.69597 4.79568 4.84526 4.87392 4.87814 4.95431 4.98032 5.03425 5.08001 5.13651 5.15090 5.15440 5.23969 5.29112 5.31332 5.32961 5.40234 5.50725 5.51960 5.55868 5.66821 5.77014 6.31271 6.35762 6.62124 7.18779 7.22018 7.91792 8.34099 9.21614 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.031758 B = 0.001771 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.442901 B =15803.101266 C =15898.191320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.089 3.911 4 C -0.134 4.134 5 C -0.113 4.113 6 C -0.071 4.071 7 C -0.124 4.124 8 C 0.518 3.482 9 O -0.584 6.584 10 N -0.620 5.620 11 C 0.105 3.895 12 C -0.113 4.113 13 C -0.107 4.107 14 H 0.060 0.940 15 C 0.161 3.839 16 N -0.613 5.613 17 C 0.177 3.823 18 C -0.258 4.258 19 H 0.065 0.935 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.962 3.038 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.294 1.294 26 C 0.116 3.884 27 C -0.103 4.103 28 C -0.114 4.114 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.037 0.963 46 H -0.002 1.002 47 H 0.011 0.989 48 H 0.043 0.957 49 H 0.247 0.753 50 H 0.071 0.929 51 H 0.056 0.944 52 H 0.083 0.917 53 H 0.084 0.916 54 H 0.056 0.944 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.506 -17.477 -16.532 30.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.032 3.968 4 C -0.172 4.172 5 C -0.150 4.150 6 C -0.090 4.090 7 C -0.163 4.163 8 C 0.309 3.691 9 O -0.465 6.465 10 N -0.354 5.354 11 C -0.017 4.017 12 C -0.151 4.151 13 C -0.129 4.129 14 H 0.078 0.922 15 C 0.034 3.966 16 N -0.336 5.336 17 C 0.032 3.968 18 C -0.388 4.388 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.584 5.584 22 Si 0.791 3.209 23 H -0.194 1.194 24 H -0.217 1.217 25 H -0.222 1.222 26 C -0.008 4.008 27 C -0.140 4.140 28 C -0.152 4.152 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.016 0.984 47 H 0.030 0.970 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.089 0.911 51 H 0.074 0.926 52 H 0.102 0.898 53 H 0.102 0.898 54 H 0.074 0.926 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.489 -17.957 -16.066 30.371 hybrid contribution 1.157 0.429 0.944 1.554 sum -17.332 -17.528 -15.122 28.919 Atomic orbital electron populations 1.22938 0.79989 1.03577 1.00628 1.87875 1.21086 1.29017 1.95182 1.22262 0.95476 0.84009 0.95085 1.21949 1.00640 0.97220 0.97417 1.21591 0.96028 0.96126 1.01263 1.20914 0.96413 0.94838 0.96835 1.21768 1.04273 0.98788 0.91458 1.21135 0.75971 0.79133 0.92890 1.90657 1.54910 1.52430 1.48499 1.48745 1.60930 1.16740 1.08944 1.22221 1.00899 0.87878 0.90690 1.22562 1.00409 0.96776 0.95325 1.22861 0.96735 0.95756 0.97504 0.92189 1.20734 0.91348 0.89682 0.94794 1.44048 1.05729 1.22144 1.61673 1.20578 0.95918 0.87662 0.92625 1.19480 0.88618 0.92224 1.38478 0.91695 1.25701 1.02271 0.95382 1.01326 1.70228 1.34147 0.98057 1.55976 0.85279 0.81206 0.77702 0.76712 1.19394 1.21710 1.22158 1.22151 0.97322 0.95903 0.85392 1.21519 1.02150 0.95513 0.94838 1.21563 0.94772 0.98068 1.00803 0.92809 0.88812 0.93896 0.90806 0.92159 0.93238 0.92501 0.90928 0.92754 0.86857 0.86364 0.89994 0.88690 0.90695 0.90367 0.92849 0.94470 0.98351 0.97009 0.93859 0.94359 0.91121 0.92567 0.89814 0.89771 0.92556 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.52 16 2 O -0.41 -7.55 10.35 -148.98 -1.54 -9.09 16 3 C 0.09 1.38 2.61 30.59 0.08 1.46 16 4 C -0.13 -2.48 5.54 30.60 0.17 -2.31 16 5 C -0.11 -2.07 4.95 30.59 0.15 -1.92 16 6 C -0.07 -1.17 1.84 -10.80 -0.02 -1.19 16 7 C -0.12 -1.85 4.37 29.85 0.13 -1.72 16 8 C 0.52 12.84 7.57 87.66 0.66 13.50 16 9 O -0.58 -19.36 14.22 -3.03 -0.04 -19.40 16 10 N -0.62 -15.09 3.32 -811.35 -2.70 -17.79 16 11 C 0.10 1.96 6.48 86.73 0.56 2.53 16 12 C -0.11 -2.84 5.02 31.78 0.16 -2.68 16 13 C -0.11 -3.34 3.31 -9.32 -0.03 -3.37 16 14 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 15 C 0.16 6.15 5.16 86.38 0.45 6.59 16 16 N -0.61 -29.31 2.84 -726.93 -2.06 -31.38 16 17 C 0.18 8.23 8.61 127.77 1.10 9.33 16 18 C -0.26 -13.89 9.64 84.03 0.81 -13.08 16 19 H 0.07 3.46 7.87 -2.91 -0.02 3.44 16 20 C -0.05 -2.87 5.07 84.86 0.43 -2.44 16 21 N -0.94 -54.98 10.81 21.65 0.23 -54.74 16 22 Si 0.96 44.94 29.58 68.60 2.03 46.97 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 26 C 0.12 3.30 6.38 86.93 0.55 3.86 16 27 C -0.10 -1.12 5.20 30.58 0.16 -0.96 16 28 C -0.11 -1.58 5.57 30.58 0.17 -1.41 16 29 H 0.05 0.48 8.09 -2.38 -0.02 0.46 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.48 7.87 -2.39 -0.02 0.46 16 32 H 0.07 0.91 7.79 -2.39 -0.02 0.89 16 33 H 0.06 1.07 7.87 -2.39 -0.02 1.05 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.43 5.95 -2.39 -0.01 1.41 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.19 7.95 -2.38 -0.02 1.17 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.30 8.14 -2.38 -0.02 1.29 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.08 1.90 7.15 -2.38 -0.02 1.88 16 44 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 45 H 0.04 1.49 8.04 -2.38 -0.02 1.47 16 46 H 0.00 -0.10 7.32 -2.39 -0.02 -0.11 16 47 H 0.01 0.57 7.40 -2.39 -0.02 0.56 16 48 H 0.04 1.62 6.16 -2.39 -0.01 1.60 16 49 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 50 H 0.07 1.94 8.04 -2.39 -0.02 1.92 16 51 H 0.06 1.79 8.03 -2.39 -0.02 1.77 16 52 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 54 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 55 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -70.01 418.31 3.50 -66.51 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.82 Total: 11.22 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 6.76 Total: 7.71 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -4.53 Total: -103.91 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.58 Total: -28.49 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.01 3.50 -66.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714906251.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.286 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds