Wall clock time and date at job start Tue Mar 31 2020 22:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00168 * 2 1 4 4 H 1.09003 * 109.46887 * 329.99419 * 3 2 1 5 5 C 1.52998 * 109.47434 * 89.99527 * 3 2 1 6 6 C 1.53000 * 109.47171 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47266 * 300.00096 * 6 5 3 8 8 C 1.53005 * 109.46829 * 59.99842 * 7 6 5 9 9 H 1.08998 * 109.47012 * 60.00554 * 8 7 6 10 10 C 1.50700 * 109.46798 * 179.97438 * 8 7 6 11 11 O 1.21285 * 119.99271 * 95.34043 * 10 8 7 12 12 N 1.34774 * 120.00506 * 275.33750 * 10 8 7 13 13 C 1.46923 * 120.63071 * 175.30650 * 12 10 8 14 14 C 1.53188 * 108.77695 * 233.63093 * 13 12 10 15 15 C 1.53038 * 109.31549 * 305.36568 * 14 13 12 16 16 C 1.52994 * 109.46396 * 181.38262 * 15 14 13 17 17 C 1.52995 * 109.47568 * 174.97490 * 16 15 14 18 18 N 1.46495 * 109.47548 * 180.02562 * 17 16 15 19 19 C 1.36939 * 120.00229 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99749 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00075 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99976 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00139 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47270 * 180.02562 * 23 21 19 25 25 H 1.48504 * 109.47055 * 300.00451 * 23 21 19 26 26 H 1.48502 * 109.47009 * 59.99908 * 23 21 19 27 27 C 1.53042 * 109.52559 * 61.37178 * 15 14 13 28 28 C 1.46923 * 120.62848 * 355.33630 * 12 10 8 29 29 C 1.52997 * 109.46921 * 209.99978 * 3 2 1 30 30 H 1.09001 * 109.47308 * 300.00581 * 1 2 3 31 31 H 1.09002 * 109.46636 * 60.00514 * 1 2 3 32 32 H 1.08994 * 109.47252 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47171 * 60.00066 * 5 3 2 34 34 H 1.09000 * 109.47004 * 300.00341 * 5 3 2 35 35 H 1.09006 * 109.47259 * 179.97438 * 6 5 3 36 36 H 1.09003 * 109.46988 * 59.99992 * 6 5 3 37 37 H 1.08998 * 109.46871 * 300.00309 * 7 6 5 38 38 H 1.08996 * 109.47021 * 179.97438 * 7 6 5 39 39 H 1.09007 * 109.58465 * 113.84536 * 13 12 10 40 40 H 1.08997 * 109.58812 * 353.42232 * 13 12 10 41 41 H 1.09004 * 109.49664 * 185.42077 * 14 13 12 42 42 H 1.09001 * 109.52460 * 65.33921 * 14 13 12 43 43 H 1.08997 * 109.46251 * 301.36305 * 15 14 13 44 44 H 1.09004 * 109.46779 * 54.97551 * 16 15 14 45 45 H 1.09006 * 109.47354 * 294.97898 * 16 15 14 46 46 H 1.09004 * 109.47021 * 60.00208 * 17 16 15 47 47 H 1.09006 * 109.47116 * 300.00553 * 17 16 15 48 48 H 0.97004 * 120.00260 * 0.02562 * 18 17 16 49 49 H 0.97006 * 119.99948 * 359.97438 * 22 21 19 50 50 H 1.08999 * 109.49743 * 58.57773 * 27 15 14 51 51 H 1.08996 * 109.50250 * 178.67733 * 27 15 14 52 52 H 1.09001 * 109.58756 * 246.15407 * 28 12 10 53 53 H 1.08996 * 109.59173 * 6.43484 * 28 12 10 54 54 H 1.08998 * 109.47727 * 59.99997 * 29 3 2 55 55 H 1.09003 * 109.46883 * 299.99443 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 2.8406 3.1689 1.4424 7 6 4.1894 3.1260 0.7214 8 6 3.9820 2.6600 -0.7211 9 1 3.3172 3.3541 -1.2351 10 6 5.3104 2.6183 -1.4315 11 8 5.9307 1.5782 -1.4967 12 7 5.8091 3.7368 -1.9942 13 6 7.1475 3.7372 -2.6002 14 6 7.9671 4.8758 -1.9849 15 6 7.2041 6.1927 -2.1454 16 6 8.0351 7.3376 -1.5628 17 6 7.3310 8.6685 -1.8344 18 7 8.1270 9.7648 -1.2770 19 6 7.6926 11.0576 -1.3998 20 1 6.7630 11.2690 -1.9072 21 6 8.4466 12.0963 -0.8712 22 7 9.5793 11.8387 -0.2524 23 14 7.8537 13.8599 -1.0381 24 1 8.8315 14.7739 -0.3950 25 1 7.7261 14.2052 -2.4767 26 1 6.5322 14.0026 -0.3757 27 6 5.8683 6.1036 -1.4039 28 6 5.0248 4.9791 -2.0128 29 6 3.3590 1.2631 -0.7212 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 2.8829 1.0775 1.9564 34 1 1.2568 1.8015 1.9562 35 1 2.9880 3.5011 2.4701 36 1 2.1757 3.8630 0.9283 37 1 4.8542 2.4318 1.2354 38 1 4.6330 4.1216 0.7209 39 1 7.0615 3.8890 -3.6762 40 1 7.6388 2.7847 -2.4017 41 1 8.9285 4.9481 -2.4935 42 1 8.1299 4.6764 -0.9257 43 1 7.0203 6.3793 -3.2035 44 1 9.0201 7.3457 -2.0296 45 1 8.1439 7.1969 -0.4873 46 1 6.3461 8.6603 -1.3676 47 1 7.2223 8.8091 -2.9098 48 1 8.9622 9.5750 -0.8216 49 1 9.8870 10.9228 -0.1654 50 1 6.0505 5.8922 -0.3503 51 1 5.3357 7.0498 -1.4988 52 1 4.7656 5.2322 -3.0408 53 1 4.1143 4.8453 -1.4288 54 1 3.2113 0.9312 -1.7489 55 1 4.0242 0.5692 -0.2073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715176086.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:27 Heat of formation + Delta-G solvation = -122.251562 kcal Electronic energy + Delta-G solvation = -30324.686372 eV Core-core repulsion = 26359.567461 eV Total energy + Delta-G solvation = -3965.118911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.73094 -39.99117 -38.98705 -37.23939 -37.10503 -35.22616 -33.15428 -32.41506 -31.71911 -30.98332 -29.70840 -27.33591 -26.58250 -25.25169 -24.34947 -24.07919 -23.38598 -22.49087 -21.50208 -20.97229 -19.81090 -19.35388 -18.40913 -17.59503 -16.82320 -16.73544 -16.42284 -16.29355 -16.06316 -15.93917 -15.80975 -15.62272 -15.28485 -15.06127 -14.89278 -14.70604 -14.44427 -14.27808 -14.08514 -13.91730 -13.49751 -13.31462 -13.12448 -12.78728 -12.70980 -12.65192 -12.56109 -12.37532 -12.31698 -12.23148 -12.06563 -11.93708 -11.82255 -11.71915 -11.53009 -11.50599 -11.46133 -11.34560 -11.11692 -10.88024 -10.76519 -10.37013 -9.69111 -9.10508 -8.40741 -5.34415 1.52543 1.58833 1.69204 1.85593 1.92572 2.72079 2.78723 3.35631 3.39560 3.58647 3.65267 3.72098 3.78369 3.84240 3.99775 4.04122 4.09364 4.09999 4.19256 4.22842 4.29023 4.33130 4.36173 4.39210 4.50280 4.52126 4.54104 4.54617 4.58018 4.59931 4.70823 4.79366 4.83916 4.85393 4.91114 4.93324 4.98772 5.00152 5.04471 5.07479 5.13233 5.15948 5.18412 5.23620 5.24626 5.32620 5.39495 5.49513 5.56019 5.58566 6.29118 6.36849 6.48434 7.09676 7.10608 8.00286 8.11303 9.11354 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.002012 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.007735 B =13910.675555 C =14974.117124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.093 3.907 4 H 0.081 0.919 5 C -0.140 4.140 6 C -0.108 4.108 7 C -0.109 4.109 8 C -0.095 4.095 9 H 0.123 0.877 10 C 0.516 3.484 11 O -0.587 6.587 12 N -0.607 5.607 13 C 0.113 3.887 14 C -0.120 4.120 15 C -0.073 4.073 16 C -0.109 4.109 17 C 0.157 3.843 18 N -0.763 5.763 19 C -0.335 4.335 20 H 0.068 0.932 21 C -0.108 4.108 22 N -0.976 5.976 23 Si 1.129 2.871 24 H -0.294 1.294 25 H -0.277 1.277 26 H -0.275 1.275 27 C -0.129 4.129 28 C 0.105 3.895 29 C -0.094 4.094 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.029 0.971 47 H 0.016 0.984 48 H 0.358 0.642 49 H 0.243 0.757 50 H 0.061 0.939 51 H 0.083 0.917 52 H 0.087 0.913 53 H 0.110 0.890 54 H 0.061 0.939 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.018 -22.366 -1.396 30.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.035 3.965 4 H 0.099 0.901 5 C -0.178 4.178 6 C -0.146 4.146 7 C -0.147 4.147 8 C -0.116 4.116 9 H 0.141 0.859 10 C 0.306 3.694 11 O -0.467 6.467 12 N -0.339 5.339 13 C -0.010 4.010 14 C -0.159 4.159 15 C -0.092 4.092 16 C -0.147 4.147 17 C 0.031 3.969 18 N -0.407 5.407 19 C -0.467 4.467 20 H 0.086 0.914 21 C -0.299 4.299 22 N -0.624 5.624 23 Si 0.953 3.047 24 H -0.220 1.220 25 H -0.203 1.203 26 H -0.201 1.201 27 C -0.167 4.167 28 C -0.017 4.017 29 C -0.132 4.132 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.034 0.966 48 H 0.190 0.810 49 H 0.053 0.947 50 H 0.080 0.920 51 H 0.101 0.899 52 H 0.105 0.895 53 H 0.128 0.872 54 H 0.080 0.920 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.471 -21.466 -1.225 29.007 hybrid contribution 0.465 -1.590 -0.124 1.661 sum -19.006 -23.055 -1.348 29.910 Atomic orbital electron populations 1.22967 0.79575 1.03644 1.00959 1.87894 1.21394 1.28720 1.95234 1.22148 0.93917 0.84489 0.95933 0.90058 1.22039 1.01825 0.97383 0.96520 1.21465 0.95176 0.96383 1.01563 1.21520 0.99063 1.01769 0.92304 1.21293 0.93362 0.99191 0.97796 0.85941 1.21072 0.88152 0.82546 0.77675 1.90669 1.62782 1.31876 1.61363 1.48255 1.17614 1.11023 1.57035 1.21583 0.82456 0.99257 0.97677 1.21885 0.98988 0.93726 1.01252 1.20995 0.94889 0.92906 1.00450 1.21641 0.98899 0.93624 1.00502 1.20828 0.94035 0.86587 0.95456 1.42695 1.25521 1.03293 1.69226 1.20426 1.06522 0.86070 1.33664 0.91354 1.27301 0.96062 1.08059 0.98500 1.70998 1.23346 1.20650 1.47421 0.82619 0.74998 0.70373 0.76666 1.21984 1.20301 1.20077 1.22008 0.95781 0.99122 0.99805 1.22047 0.94553 0.81980 1.03093 1.21297 0.95617 0.95515 1.00800 0.92944 0.92990 0.89001 0.92569 0.90430 0.90283 0.89547 0.92905 0.90338 0.90086 0.90694 0.90058 0.92594 0.90144 0.92768 0.92925 0.95326 0.96599 0.81003 0.94683 0.91974 0.89853 0.89495 0.87171 0.91981 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.41 -7.25 10.35 -148.98 -1.54 -8.80 16 3 C 0.09 1.30 2.61 30.59 0.08 1.38 16 4 H 0.08 0.81 7.79 -2.39 -0.02 0.79 16 5 C -0.14 -1.73 5.54 30.59 0.17 -1.56 16 6 C -0.11 -1.10 5.92 30.59 0.18 -0.92 16 7 C -0.11 -1.53 5.07 30.60 0.16 -1.37 16 8 C -0.10 -1.46 1.69 -11.56 -0.02 -1.48 16 9 H 0.12 1.18 6.28 -2.39 -0.02 1.16 16 10 C 0.52 11.42 6.80 87.66 0.60 12.02 16 11 O -0.59 -18.12 15.52 -3.05 -0.05 -18.17 16 12 N -0.61 -11.44 2.97 -818.93 -2.43 -13.88 16 13 C 0.11 2.23 6.42 86.36 0.55 2.79 16 14 C -0.12 -2.44 5.36 30.67 0.16 -2.27 16 15 C -0.07 -1.58 2.15 -10.77 -0.02 -1.60 16 16 C -0.11 -3.25 4.80 30.59 0.15 -3.11 16 17 C 0.16 6.02 6.02 86.38 0.52 6.54 16 18 N -0.76 -38.92 5.60 -343.46 -1.92 -40.85 16 19 C -0.34 -19.00 9.99 84.03 0.84 -18.16 16 20 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 21 C -0.11 -6.33 5.50 84.86 0.47 -5.87 16 22 N -0.98 -61.65 13.70 21.65 0.30 -61.35 16 23 Si 1.13 51.56 29.92 68.60 2.05 53.61 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 C -0.13 -2.36 5.14 30.67 0.16 -2.21 16 28 C 0.10 1.45 6.23 86.36 0.54 1.98 16 29 C -0.09 -1.71 4.38 30.58 0.13 -1.57 16 30 H 0.05 0.41 7.87 -2.39 -0.02 0.39 16 31 H 0.05 0.41 8.09 -2.39 -0.02 0.40 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.77 7.87 -2.39 -0.02 0.75 16 35 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.05 7.90 -2.39 -0.02 1.03 16 39 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.07 1.75 7.03 -2.39 -0.02 1.73 16 41 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 46 H 0.03 1.07 6.54 -2.38 -0.02 1.06 16 47 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.36 19.07 6.50 -92.71 -0.60 18.46 16 49 H 0.24 15.31 6.77 -92.70 -0.63 14.69 16 50 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.08 1.59 6.50 -2.39 -0.02 1.58 16 52 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.11 1.01 5.20 -2.39 -0.01 1.00 16 54 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 55 H 0.05 1.31 7.87 -2.39 -0.02 1.29 16 Total: -1.00 -75.91 416.01 2.68 -73.24 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.39 Total: 30.11 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 5.89 Total: -13.93 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -4.06 Total: -116.07 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -1.59 Total: -26.96 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -75.91 2.68 -73.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715176086.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.015 kcal (2) G-P(sol) polarization free energy of solvation -75.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds