Wall clock time and date at job start Tue Mar 31 2020 22:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00078 * 2 1 4 4 H 1.08998 * 109.47567 * 330.00065 * 3 2 1 5 5 C 1.53004 * 109.47063 * 90.00507 * 3 2 1 6 6 C 1.52995 * 109.47418 * 59.99899 * 5 3 2 7 7 C 1.52995 * 109.47242 * 60.00082 * 6 5 3 8 8 C 1.53009 * 109.47339 * 300.00319 * 7 6 5 9 9 H 1.08996 * 109.46662 * 299.99981 * 8 7 6 10 10 C 1.50700 * 109.47113 * 179.97438 * 8 7 6 11 11 O 1.21284 * 119.99752 * 264.69615 * 10 8 7 12 12 N 1.34774 * 119.99818 * 84.97638 * 10 8 7 13 13 C 1.46924 * 120.63357 * 4.14300 * 12 10 8 14 14 C 1.52767 * 109.00841 * 233.58821 * 13 12 10 15 15 C 1.53041 * 109.37966 * 305.58350 * 14 13 12 16 16 C 1.52995 * 109.46053 * 181.25997 * 15 14 13 17 17 C 1.53007 * 109.47063 * 64.93335 * 16 15 14 18 18 N 1.46494 * 109.47297 * 180.02562 * 17 16 15 19 19 C 1.36932 * 120.00016 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00250 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00064 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00145 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00168 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47192 * 89.99982 * 23 21 19 25 25 H 1.48500 * 109.47364 * 209.99794 * 23 21 19 26 26 H 1.48502 * 109.47010 * 329.99820 * 23 21 19 27 27 C 1.53043 * 109.53870 * 61.24214 * 15 14 13 28 28 C 1.46930 * 120.62697 * 184.42530 * 12 10 8 29 29 C 1.52998 * 109.46704 * 59.99673 * 8 7 6 30 30 H 1.09004 * 109.47193 * 59.99855 * 1 2 3 31 31 H 1.09000 * 109.47495 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47042 * 299.99878 * 1 2 3 33 33 H 1.08998 * 109.47029 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.46560 * 299.99909 * 5 3 2 35 35 H 1.08997 * 109.47340 * 180.02562 * 6 5 3 36 36 H 1.09004 * 109.47114 * 300.00575 * 6 5 3 37 37 H 1.09001 * 109.47610 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47228 * 59.99954 * 7 6 5 39 39 H 1.08997 * 109.58656 * 353.41948 * 13 12 10 40 40 H 1.08998 * 109.58627 * 113.84501 * 13 12 10 41 41 H 1.09003 * 109.56331 * 185.55384 * 14 13 12 42 42 H 1.08990 * 109.38843 * 65.51337 * 14 13 12 43 43 H 1.08996 * 109.46468 * 301.22002 * 15 14 13 44 44 H 1.08991 * 109.47682 * 184.93400 * 16 15 14 45 45 H 1.08999 * 109.47355 * 304.94087 * 16 15 14 46 46 H 1.09005 * 109.47003 * 300.00459 * 17 16 15 47 47 H 1.08999 * 109.46935 * 60.00069 * 17 16 15 48 48 H 0.96999 * 120.00174 * 0.02562 * 18 17 16 49 49 H 0.96999 * 119.99805 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.50120 * 178.67743 * 27 15 14 51 51 H 1.09001 * 109.49716 * 58.58356 * 27 15 14 52 52 H 1.09003 * 109.58366 * 246.15010 * 28 12 10 53 53 H 1.08998 * 109.59057 * 6.57684 * 28 12 10 54 54 H 1.08996 * 109.47309 * 60.00705 * 29 8 7 55 55 H 1.09006 * 109.46885 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.1515 0.7973 2.1637 7 6 4.5001 0.7550 1.4425 8 6 4.2927 0.2892 -0.0001 9 1 3.8493 -0.7065 -0.0001 10 6 5.6210 0.2482 -0.7107 11 8 5.9805 1.1941 -1.3793 12 7 6.4069 -0.8418 -0.6078 13 6 5.9442 -2.0325 0.1180 14 6 6.9845 -2.4085 1.1716 15 6 8.3504 -2.5721 0.5010 16 6 9.3875 -2.9794 1.5494 17 6 9.0379 -4.3627 2.1021 18 7 10.0306 -4.7524 3.1064 19 6 9.9234 -5.9604 3.7423 20 1 9.1067 -6.6257 3.5038 21 6 10.8637 -6.3295 4.6944 22 7 11.8588 -5.5186 4.9855 23 14 10.7170 -7.9771 5.5624 24 1 11.4563 -9.0097 4.7927 25 1 11.2925 -7.8706 6.9272 26 1 9.2856 -8.3608 5.6574 27 6 8.7675 -1.2468 -0.1408 28 6 7.7452 -0.8596 -1.2140 29 6 3.3589 1.2633 -0.7212 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.6606 2.7672 1.4425 34 1 1.2569 1.8013 1.9563 35 1 3.2990 1.1289 3.1915 36 1 2.7082 -0.1985 2.1636 37 1 5.1653 0.0608 1.9560 38 1 4.9435 1.7508 1.4424 39 1 4.9937 -1.8167 0.6058 40 1 5.8194 -2.8603 -0.5800 41 1 6.6987 -3.3462 1.6484 42 1 7.0400 -1.6206 1.9226 43 1 8.2881 -3.3435 -0.2666 44 1 10.3755 -3.0108 1.0902 45 1 9.3874 -2.2529 2.3620 46 1 8.0499 -4.3313 2.5614 47 1 9.0380 -5.0892 1.2896 48 1 10.7640 -4.1549 3.3210 49 1 12.5161 -5.7768 5.6506 50 1 9.7508 -1.3575 -0.5980 51 1 8.8061 -0.4694 0.6222 52 1 7.7702 -1.5899 -2.0228 53 1 7.9826 0.1298 -1.6048 54 1 3.8022 2.2590 -0.7213 55 1 3.2107 0.9312 -1.7488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715176087.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:32 Heat of formation + Delta-G solvation = -119.476399 kcal Electronic energy + Delta-G solvation = -30579.427615 eV Core-core repulsion = 26614.429044 eV Total energy + Delta-G solvation = -3964.998571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68932 -40.02290 -38.91412 -36.88780 -36.78182 -35.02544 -33.13749 -32.43158 -31.67213 -31.05968 -29.84004 -27.31623 -26.72927 -25.21080 -24.28226 -23.94099 -23.51041 -22.35759 -21.40420 -20.69745 -19.74183 -19.12364 -18.32944 -17.45335 -16.78169 -16.67322 -16.39034 -16.26225 -16.11336 -15.80297 -15.71782 -15.42732 -15.30774 -14.91545 -14.83876 -14.50238 -14.37856 -14.04591 -13.93936 -13.62619 -13.49646 -13.24428 -13.15099 -13.03519 -12.86638 -12.81540 -12.51741 -12.27794 -12.24896 -12.22037 -12.17150 -12.10261 -11.96626 -11.78592 -11.62593 -11.45453 -11.29829 -11.18502 -11.13273 -10.87543 -10.62864 -10.32713 -9.64524 -8.98247 -7.94692 -5.23660 1.47680 1.49825 1.58270 1.58456 2.01714 2.56799 2.90512 3.38891 3.41673 3.67505 3.72528 3.77448 3.79616 3.88006 4.04782 4.13958 4.18969 4.20461 4.25803 4.33667 4.39772 4.41222 4.44234 4.47614 4.58097 4.60317 4.61508 4.64409 4.66680 4.68443 4.79263 4.84245 4.87119 4.90407 4.96658 4.99072 5.04154 5.06638 5.09097 5.14436 5.16247 5.22773 5.24891 5.28699 5.32090 5.41453 5.47685 5.50255 5.56329 5.61871 6.28150 6.34162 6.41053 7.15090 7.33531 8.11443 8.33272 9.29172 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.002167 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.728739 B =12920.394792 C =14048.097754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.092 3.908 4 H 0.075 0.925 5 C -0.140 4.140 6 C -0.107 4.107 7 C -0.104 4.104 8 C -0.095 4.095 9 H 0.109 0.891 10 C 0.515 3.485 11 O -0.586 6.586 12 N -0.608 5.608 13 C 0.107 3.893 14 C -0.128 4.128 15 C -0.073 4.073 16 C -0.108 4.108 17 C 0.151 3.849 18 N -0.751 5.751 19 C -0.244 4.244 20 H 0.077 0.923 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.267 1.267 27 C -0.120 4.120 28 C 0.112 3.888 29 C -0.094 4.094 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.028 0.972 47 H 0.018 0.982 48 H 0.372 0.628 49 H 0.251 0.749 50 H 0.083 0.917 51 H 0.055 0.945 52 H 0.080 0.920 53 H 0.076 0.924 54 H 0.077 0.923 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.314 15.239 -12.551 31.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.034 3.966 4 H 0.093 0.907 5 C -0.178 4.178 6 C -0.145 4.145 7 C -0.142 4.142 8 C -0.116 4.116 9 H 0.126 0.874 10 C 0.305 3.695 11 O -0.467 6.467 12 N -0.340 5.340 13 C -0.015 4.015 14 C -0.166 4.166 15 C -0.092 4.092 16 C -0.146 4.146 17 C 0.025 3.975 18 N -0.394 5.394 19 C -0.376 4.376 20 H 0.095 0.905 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.192 1.192 27 C -0.158 4.158 28 C -0.010 4.010 29 C -0.132 4.132 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.046 0.954 47 H 0.036 0.964 48 H 0.203 0.797 49 H 0.060 0.940 50 H 0.101 0.899 51 H 0.074 0.926 52 H 0.098 0.902 53 H 0.095 0.905 54 H 0.096 0.904 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.117 15.390 -12.879 31.374 hybrid contribution 0.707 -0.433 0.691 1.079 sum -23.410 14.957 -12.188 30.336 Atomic orbital electron populations 1.22918 0.80141 1.03484 1.00548 1.87888 1.20714 1.28009 1.95143 1.22126 0.93755 0.84919 0.95767 0.90687 1.22041 1.00610 0.99608 0.95542 1.21372 0.93774 1.00614 0.98734 1.21460 0.98846 1.01468 0.92463 1.21257 0.91282 1.02887 0.96143 0.87351 1.21197 0.86953 0.81224 0.80111 1.90638 1.75595 1.37387 1.43055 1.48269 1.16548 1.15139 1.54044 1.21896 0.98232 0.86876 0.94513 1.21928 0.94405 1.02527 0.97789 1.20999 0.94174 0.97177 0.96892 1.21621 0.98980 0.95767 0.98201 1.20892 0.91902 0.94343 0.90331 1.42672 1.30728 1.19558 1.46393 1.19669 1.07753 0.95250 1.14942 0.90502 1.25628 0.97778 1.02337 1.01482 1.69829 1.16582 1.38514 1.37366 0.85111 0.77918 0.79334 0.77240 1.21386 1.22207 1.19191 1.21888 0.98961 0.96913 0.98079 1.21599 0.81227 1.02616 0.95560 1.21447 0.93514 0.99738 0.98533 0.93517 0.89023 0.93267 0.90549 0.90627 0.90974 0.91134 0.91366 0.92318 0.87936 0.89799 0.89851 0.92123 0.90139 0.92601 0.92954 0.95423 0.96400 0.79688 0.94035 0.89875 0.92588 0.90214 0.90520 0.90414 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 113.37 1.23 1.46 16 2 O -0.40 -5.82 9.00 -148.98 -1.34 -7.16 16 3 C 0.09 1.21 2.92 30.60 0.09 1.30 16 4 H 0.08 0.79 7.79 -2.39 -0.02 0.77 16 5 C -0.14 -1.62 5.63 30.59 0.17 -1.45 16 6 C -0.11 -1.43 5.78 30.59 0.18 -1.25 16 7 C -0.10 -1.71 5.07 30.60 0.16 -1.55 16 8 C -0.09 -1.70 1.54 -11.54 -0.02 -1.72 16 9 H 0.11 1.81 5.84 -2.39 -0.01 1.79 16 10 C 0.52 12.15 6.81 87.66 0.60 12.75 16 11 O -0.59 -17.99 15.52 -3.04 -0.05 -18.04 16 12 N -0.61 -12.70 2.98 -819.72 -2.44 -15.14 16 13 C 0.11 1.81 6.20 86.22 0.53 2.35 16 14 C -0.13 -2.64 5.13 30.53 0.16 -2.48 16 15 C -0.07 -1.68 2.15 -10.77 -0.02 -1.70 16 16 C -0.11 -3.33 4.80 30.60 0.15 -3.19 16 17 C 0.15 5.88 6.02 86.38 0.52 6.40 16 18 N -0.75 -38.78 5.60 -343.45 -1.92 -40.70 16 19 C -0.24 -13.78 9.99 84.03 0.84 -12.95 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 22 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 23 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C -0.12 -2.56 5.36 30.67 0.16 -2.39 16 28 C 0.11 2.35 6.42 86.36 0.55 2.91 16 29 C -0.09 -1.62 4.47 30.59 0.14 -1.48 16 30 H 0.05 0.36 8.09 -2.38 -0.02 0.34 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.37 7.87 -2.39 -0.02 0.35 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.72 7.87 -2.39 -0.02 0.70 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.99 7.68 -2.39 -0.02 0.97 16 37 H 0.07 1.15 7.89 -2.39 -0.02 1.13 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.47 5.19 -2.39 -0.01 1.46 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.77 6.50 -2.39 -0.02 1.76 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.03 1.05 6.53 -2.38 -0.02 1.03 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.37 20.52 7.67 -92.71 -0.71 19.81 16 49 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 50 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.08 1.83 7.03 -2.39 -0.02 1.81 16 54 H 0.08 1.46 7.87 -2.39 -0.02 1.44 16 55 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -70.68 415.57 2.59 -68.09 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.14 Total: 31.88 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.90 Total: -7.19 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -4.08 Total: -115.88 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.39 Total: -25.19 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -70.68 2.59 -68.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715176087.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.390 kcal (2) G-P(sol) polarization free energy of solvation -70.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds