Wall clock time and date at job start Tue Mar 31 2020 22:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00643 * 2 1 4 4 H 1.09008 * 109.46886 * 30.00084 * 3 2 1 5 5 C 1.53004 * 109.47415 * 270.00228 * 3 2 1 6 6 C 1.53002 * 109.47005 * 300.00013 * 5 3 2 7 7 C 1.53004 * 109.46922 * 300.00010 * 6 5 3 8 8 C 1.53001 * 109.47306 * 59.99608 * 7 6 5 9 9 H 1.09002 * 109.46685 * 60.00177 * 8 7 6 10 10 C 1.50697 * 109.46802 * 179.97438 * 8 7 6 11 11 O 1.21285 * 119.99913 * 97.89349 * 10 8 7 12 12 N 1.34783 * 120.00232 * 277.88846 * 10 8 7 13 13 C 1.46924 * 120.62972 * 355.61893 * 12 10 8 14 14 C 1.53190 * 108.77294 * 233.58476 * 13 12 10 15 15 C 1.53035 * 109.31395 * 305.36293 * 14 13 12 16 16 C 1.53001 * 109.46031 * 181.38701 * 15 14 13 17 17 C 1.52997 * 109.46980 * 175.00009 * 16 15 14 18 18 N 1.46503 * 109.47133 * 180.02562 * 17 16 15 19 19 C 1.36941 * 120.00322 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99550 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00111 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99880 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99908 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47192 * 60.00374 * 23 21 19 25 25 H 1.48498 * 109.47122 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47107 * 300.00252 * 23 21 19 27 27 C 1.53041 * 109.53754 * 61.36764 * 15 14 13 28 28 C 1.46925 * 120.62820 * 175.59699 * 12 10 8 29 29 C 1.52993 * 109.47331 * 300.00211 * 8 7 6 30 30 H 1.08992 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46640 * 300.00389 * 1 2 3 32 32 H 1.08997 * 109.46724 * 59.99760 * 1 2 3 33 33 H 1.08998 * 109.47283 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.46856 * 59.99475 * 5 3 2 35 35 H 1.08991 * 109.47112 * 179.97438 * 6 5 3 36 36 H 1.08998 * 109.46857 * 59.99698 * 6 5 3 37 37 H 1.09006 * 109.46393 * 299.99946 * 7 6 5 38 38 H 1.08994 * 109.46833 * 180.02562 * 7 6 5 39 39 H 1.09003 * 109.58449 * 113.79337 * 13 12 10 40 40 H 1.09006 * 109.58388 * 353.37402 * 13 12 10 41 41 H 1.09008 * 109.49254 * 185.41308 * 14 13 12 42 42 H 1.08994 * 109.49854 * 65.32098 * 14 13 12 43 43 H 1.08999 * 109.46261 * 301.36210 * 15 14 13 44 44 H 1.08998 * 109.47202 * 55.00043 * 16 15 14 45 45 H 1.08996 * 109.46924 * 295.00279 * 16 15 14 46 46 H 1.08996 * 109.47512 * 299.99910 * 17 16 15 47 47 H 1.09002 * 109.47066 * 60.00734 * 17 16 15 48 48 H 0.97004 * 119.99571 * 359.97438 * 18 17 16 49 49 H 0.97005 * 119.99871 * 180.02562 * 22 21 19 50 50 H 1.09005 * 109.49848 * 58.58358 * 27 15 14 51 51 H 1.08995 * 109.50004 * 178.67912 * 27 15 14 52 52 H 1.09009 * 109.58106 * 246.20181 * 28 12 10 53 53 H 1.08996 * 109.59021 * 6.62484 * 28 12 10 54 54 H 1.09004 * 109.47393 * 179.97438 * 29 8 7 55 55 H 1.08998 * 109.47536 * 300.00013 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2178 1.7713 -1.4425 6 6 3.1515 0.7972 -2.1638 7 6 4.5002 0.7548 -1.4425 8 6 4.2927 0.2890 0.0000 9 1 3.8493 -0.7068 0.0000 10 6 5.6212 0.2467 0.7101 11 8 5.9610 1.1722 1.4165 12 7 6.4318 -0.8197 0.5604 13 6 5.9946 -1.9895 -0.2136 14 6 6.1560 -3.2424 0.6529 15 6 7.5982 -3.3262 1.1579 16 6 7.7721 -4.5947 1.9955 17 6 9.2410 -4.7438 2.3963 18 7 9.4077 -5.9588 3.1978 19 6 10.6455 -6.3012 3.6730 20 1 11.4988 -5.6754 3.4573 21 6 10.8032 -7.4521 4.4328 22 7 9.7631 -8.2145 4.6961 23 14 12.4918 -7.9196 5.0804 24 1 13.0021 -6.8368 5.9593 25 1 12.3924 -9.1819 5.8562 26 1 13.4235 -8.1120 3.9402 27 6 7.9111 -2.1001 2.0187 28 6 7.7696 -0.8342 1.1677 29 6 3.3591 1.2630 0.7212 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.6609 2.7672 -1.4425 34 1 1.2570 1.8014 -1.9563 35 1 3.2990 1.1289 -3.1915 36 1 2.7081 -0.1985 -2.1638 37 1 4.9436 1.7506 -1.4426 38 1 5.1655 0.0612 -1.9566 39 1 6.6071 -2.0839 -1.1104 40 1 4.9479 -1.8715 -0.4943 41 1 5.9264 -4.1273 0.0592 42 1 5.4756 -3.1872 1.5026 43 1 8.2796 -3.3562 0.3077 44 1 7.4654 -5.4615 1.4101 45 1 7.1560 -4.5254 2.8920 46 1 9.8571 -4.8131 1.4998 47 1 9.5476 -3.8770 2.9819 48 1 8.6410 -6.5203 3.3925 49 1 9.8733 -9.0186 5.2274 50 1 7.2141 -2.0555 2.8556 51 1 8.9307 -2.1719 2.3973 52 1 8.5268 -0.8344 0.3836 53 1 7.8941 0.0460 1.7985 54 1 3.2109 0.9309 1.7488 55 1 3.8024 2.2588 0.7213 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715176088.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:36 Heat of formation + Delta-G solvation = -119.637864 kcal Electronic energy + Delta-G solvation = -30376.830205 eV Core-core repulsion = 26411.824633 eV Total energy + Delta-G solvation = -3965.005573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.67253 -40.02670 -38.90570 -36.90034 -36.78081 -35.04437 -33.04232 -32.52342 -31.63717 -31.08450 -29.81862 -27.32263 -26.67691 -25.19678 -24.66461 -23.55473 -23.45364 -22.51778 -21.41366 -20.60340 -19.82823 -19.14172 -18.30464 -17.42357 -16.75607 -16.69750 -16.53834 -16.22673 -16.12561 -15.84009 -15.54268 -15.44232 -15.31671 -14.89063 -14.84299 -14.50452 -14.36541 -14.16946 -13.88311 -13.64366 -13.47937 -13.25826 -13.16199 -13.02786 -12.83101 -12.80635 -12.56065 -12.33591 -12.24874 -12.19437 -12.16508 -12.12757 -11.96046 -11.77245 -11.63103 -11.42011 -11.28784 -11.24195 -11.11629 -10.90442 -10.61086 -10.32349 -9.63842 -9.00295 -7.96276 -5.25463 1.45927 1.49629 1.55788 1.60111 2.01775 2.55324 2.89962 3.36817 3.42119 3.68497 3.70982 3.79977 3.81659 3.84252 4.04807 4.12989 4.19426 4.22880 4.26276 4.31738 4.39842 4.41129 4.44639 4.49207 4.55228 4.58909 4.60919 4.64883 4.69403 4.70308 4.76498 4.86032 4.88131 4.89540 4.97676 4.99207 5.04514 5.07026 5.11145 5.15419 5.17946 5.18481 5.26856 5.30003 5.30772 5.40991 5.48064 5.50565 5.56267 5.60055 6.26492 6.33583 6.42863 7.16382 7.31834 8.09296 8.31884 9.27257 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.001888 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.161690 B =14830.642387 C =15312.916022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.091 3.909 4 H 0.071 0.929 5 C -0.141 4.141 6 C -0.106 4.106 7 C -0.102 4.102 8 C -0.094 4.094 9 H 0.108 0.892 10 C 0.513 3.487 11 O -0.590 6.590 12 N -0.608 5.608 13 C 0.106 3.894 14 C -0.126 4.126 15 C -0.073 4.073 16 C -0.108 4.108 17 C 0.150 3.850 18 N -0.750 5.750 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.976 3.024 24 H -0.278 1.278 25 H -0.294 1.294 26 H -0.276 1.276 27 C -0.125 4.125 28 C 0.114 3.886 29 C -0.096 4.096 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.020 0.980 47 H 0.019 0.981 48 H 0.373 0.627 49 H 0.252 0.748 50 H 0.048 0.952 51 H 0.073 0.927 52 H 0.084 0.916 53 H 0.071 0.929 54 H 0.052 0.948 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.150 21.630 -18.694 34.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.034 3.966 4 H 0.089 0.911 5 C -0.178 4.178 6 C -0.144 4.144 7 C -0.140 4.140 8 C -0.115 4.115 9 H 0.126 0.874 10 C 0.303 3.697 11 O -0.471 6.471 12 N -0.340 5.340 13 C -0.016 4.016 14 C -0.164 4.164 15 C -0.092 4.092 16 C -0.145 4.145 17 C 0.024 3.976 18 N -0.393 5.393 19 C -0.380 4.380 20 H 0.093 0.907 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.805 3.195 24 H -0.204 1.204 25 H -0.220 1.220 26 H -0.202 1.202 27 C -0.164 4.164 28 C -0.009 4.009 29 C -0.134 4.134 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.204 0.796 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.091 0.909 52 H 0.102 0.898 53 H 0.090 0.910 54 H 0.071 0.929 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.670 21.970 -18.315 34.714 hybrid contribution 0.602 -0.572 1.201 1.460 sum -19.068 21.398 -17.114 33.382 Atomic orbital electron populations 1.22914 0.80150 1.03471 1.00533 1.87887 1.20696 1.28040 1.95166 1.22132 0.93549 0.84854 0.96111 0.91100 1.22043 1.00839 0.99780 0.95157 1.21381 0.93657 1.00498 0.98853 1.21471 0.99004 1.01737 0.91827 1.21262 0.90872 1.02710 0.96639 0.87402 1.21291 0.86790 0.81193 0.80448 1.90647 1.76449 1.38517 1.41442 1.48279 1.16042 1.17289 1.52402 1.22050 1.02387 0.83116 0.94042 1.21953 0.95670 0.98612 1.00164 1.21010 0.97804 0.92554 0.97815 1.21627 0.95221 0.98212 0.99482 1.20892 0.95724 0.87945 0.93040 1.42650 1.07401 1.26686 1.62531 1.19627 0.88041 1.05188 1.25174 0.90724 1.25632 1.01221 0.98156 1.02102 1.69817 1.30656 1.16684 1.44960 0.85169 0.79335 0.76946 0.78067 1.20443 1.21975 1.20179 1.21947 1.02111 0.94262 0.98032 1.21561 0.83787 0.98209 0.97305 1.21448 0.93815 0.99841 0.98344 0.89046 0.93855 0.92953 0.90516 0.90585 0.90364 0.91072 0.92196 0.90364 0.89093 0.87619 0.88729 0.92544 0.89776 0.91807 0.93302 0.96198 0.96281 0.79588 0.93947 0.93317 0.90852 0.89815 0.91017 0.92882 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 113.37 1.23 1.47 16 2 O -0.40 -5.81 9.00 -148.98 -1.34 -7.15 16 3 C 0.09 1.18 2.92 30.60 0.09 1.27 16 4 H 0.07 0.79 7.79 -2.38 -0.02 0.77 16 5 C -0.14 -1.36 5.63 30.60 0.17 -1.18 16 6 C -0.11 -1.03 5.78 30.60 0.18 -0.85 16 7 C -0.10 -1.30 5.15 30.60 0.16 -1.14 16 8 C -0.09 -1.60 1.55 -11.54 -0.02 -1.61 16 9 H 0.11 1.73 5.76 -2.39 -0.01 1.71 16 10 C 0.51 12.16 6.83 87.65 0.60 12.76 16 11 O -0.59 -18.81 15.47 -3.04 -0.05 -18.86 16 12 N -0.61 -12.67 2.97 -818.90 -2.43 -15.11 16 13 C 0.11 1.57 5.94 86.36 0.51 2.08 16 14 C -0.13 -2.30 5.36 30.67 0.16 -2.14 16 15 C -0.07 -1.70 2.15 -10.77 -0.02 -1.72 16 16 C -0.11 -3.39 4.80 30.59 0.15 -3.25 16 17 C 0.15 6.08 6.02 86.38 0.52 6.60 16 18 N -0.75 -39.62 5.60 -343.45 -1.92 -41.55 16 19 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 20 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 21 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 22 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 23 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 C -0.13 -3.14 5.14 30.67 0.16 -2.99 16 28 C 0.11 2.60 6.44 86.36 0.56 3.15 16 29 C -0.10 -1.70 4.44 30.59 0.14 -1.57 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.04 0.37 8.08 -2.39 -0.02 0.36 16 32 H 0.05 0.36 7.87 -2.39 -0.02 0.34 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.58 7.87 -2.39 -0.02 0.56 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.75 7.68 -2.39 -0.02 0.73 16 37 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.08 0.85 7.78 -2.39 -0.02 0.83 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.11 1.23 5.42 -2.38 -0.01 1.22 16 41 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.02 0.79 6.53 -2.39 -0.02 0.77 16 48 H 0.37 20.84 7.67 -92.71 -0.71 20.13 16 49 H 0.25 15.23 8.31 -92.70 -0.77 14.46 16 50 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 51 H 0.07 1.97 6.50 -2.39 -0.02 1.95 16 52 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 53 H 0.07 1.92 7.00 -2.39 -0.02 1.90 16 54 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 55 H 0.08 1.48 7.89 -2.39 -0.02 1.46 16 Total: -1.00 -73.19 415.38 2.58 -70.60 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.14 Total: 30.28 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.88 Total: -6.82 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -4.08 Total: -117.09 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -1.39 Total: -26.01 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -73.19 2.58 -70.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715176088.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.034 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds