Wall clock time and date at job start Tue Mar 31 2020 22:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00374 * 2 1 4 4 H 1.08996 * 109.47405 * 29.99877 * 3 2 1 5 5 C 1.53001 * 109.47380 * 269.99819 * 3 2 1 6 6 C 1.52995 * 109.47368 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47327 * 60.00497 * 6 5 3 8 8 C 1.53005 * 109.46839 * 300.00020 * 7 6 5 9 9 H 1.09001 * 109.47155 * 299.99835 * 8 7 6 10 10 C 1.50703 * 109.46901 * 179.97438 * 8 7 6 11 11 O 1.21278 * 119.99761 * 264.56949 * 10 8 7 12 12 N 1.34779 * 119.99894 * 84.58081 * 10 8 7 13 13 C 1.46922 * 120.62717 * 174.78827 * 12 10 8 14 14 C 1.53189 * 108.77382 * 233.57924 * 13 12 10 15 15 C 1.53039 * 109.31693 * 305.36835 * 14 13 12 16 16 C 1.52995 * 109.46266 * 181.38327 * 15 14 13 17 17 C 1.53005 * 109.47225 * 174.99674 * 16 15 14 18 18 N 1.46500 * 109.47050 * 180.02562 * 17 16 15 19 19 C 1.36936 * 119.99949 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99725 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00196 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00133 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00398 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47166 * 89.99679 * 23 21 19 25 25 H 1.48495 * 109.47454 * 210.00080 * 23 21 19 26 26 H 1.48506 * 109.47041 * 330.00092 * 23 21 19 27 27 C 1.53037 * 109.53700 * 61.36265 * 15 14 13 28 28 C 1.46928 * 120.62873 * 354.76059 * 12 10 8 29 29 C 1.52995 * 109.47177 * 59.99888 * 8 7 6 30 30 H 1.08998 * 109.47830 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46527 * 300.00357 * 1 2 3 32 32 H 1.09002 * 109.47132 * 59.99439 * 1 2 3 33 33 H 1.09000 * 109.46803 * 59.99870 * 5 3 2 34 34 H 1.08996 * 109.46899 * 300.00368 * 5 3 2 35 35 H 1.08998 * 109.47199 * 299.99615 * 6 5 3 36 36 H 1.09004 * 109.47058 * 180.02562 * 6 5 3 37 37 H 1.08994 * 109.47221 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47196 * 59.99425 * 7 6 5 39 39 H 1.09003 * 109.58302 * 113.79966 * 13 12 10 40 40 H 1.08990 * 109.58904 * 353.37020 * 13 12 10 41 41 H 1.09000 * 109.50050 * 185.41643 * 14 13 12 42 42 H 1.08999 * 109.49540 * 65.32036 * 14 13 12 43 43 H 1.09005 * 109.46174 * 301.35898 * 15 14 13 44 44 H 1.09004 * 109.47258 * 55.00116 * 16 15 14 45 45 H 1.09002 * 109.47427 * 295.00014 * 16 15 14 46 46 H 1.09004 * 109.46550 * 60.00613 * 17 16 15 47 47 H 1.08993 * 109.47262 * 300.00222 * 17 16 15 48 48 H 0.97003 * 120.00405 * 0.02562 * 18 17 16 49 49 H 0.97000 * 120.00162 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.50110 * 58.58663 * 27 15 14 51 51 H 1.09000 * 109.49914 * 178.68593 * 27 15 14 52 52 H 1.09008 * 109.58774 * 246.20431 * 28 12 10 53 53 H 1.08995 * 109.58844 * 6.63310 * 28 12 10 54 54 H 1.08996 * 109.47452 * 60.00231 * 29 8 7 55 55 H 1.09000 * 109.47326 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 2.8396 3.1692 -1.4425 7 6 4.1882 3.1275 -0.7211 8 6 3.9807 2.6616 0.7214 9 1 3.3152 3.3553 1.2351 10 6 5.3092 2.6200 1.4318 11 8 5.9287 1.5795 1.4985 12 7 5.8086 3.7390 1.9930 13 6 7.0447 3.6912 2.7857 14 6 6.7755 4.3186 4.1570 15 6 6.2048 5.7258 3.9668 16 6 5.9669 6.3686 5.3346 17 6 5.5148 7.8180 5.1453 18 7 5.2876 8.4337 6.4550 19 6 4.8742 9.7367 6.5367 20 1 4.7161 10.3105 5.6354 21 6 4.6595 10.3203 7.7776 22 7 4.8526 9.6211 8.8759 23 14 4.0963 12.0979 7.8890 24 1 2.6122 12.1481 7.8854 25 1 4.6089 12.7018 9.1451 26 1 4.6201 12.8569 6.7251 27 6 4.8798 5.6420 3.2054 28 6 5.1275 5.0297 1.8232 29 6 3.3590 1.2637 0.7214 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.2570 1.8014 -1.9563 34 1 2.8830 1.0773 -1.9563 35 1 2.1740 3.8629 -0.9289 36 1 2.9870 3.5013 -2.4702 37 1 4.6313 4.1233 -0.7215 38 1 4.8537 2.4338 -1.2348 39 1 7.8280 4.2515 2.2751 40 1 7.3574 2.6550 2.9129 41 1 7.7073 4.3770 4.7197 42 1 6.0582 3.7058 4.7029 43 1 6.9118 6.3308 3.3992 44 1 6.8918 6.3490 5.9111 45 1 5.1947 5.8138 5.8675 46 1 4.5898 7.8377 4.5688 47 1 6.2869 8.3728 4.6124 48 1 5.4299 7.9185 7.2645 49 1 4.7022 10.0289 9.7432 50 1 4.1803 5.0167 3.7602 51 1 4.4623 6.6423 3.0907 52 1 5.7545 5.6991 1.2341 53 1 4.1753 4.8764 1.3155 54 1 4.0245 0.5700 0.2077 55 1 3.2107 0.9319 1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715176089.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:41 Heat of formation + Delta-G solvation = -122.013390 kcal Electronic energy + Delta-G solvation = -30226.539690 eV Core-core repulsion = 26261.431107 eV Total energy + Delta-G solvation = -3965.108583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.69251 -39.96620 -38.93401 -37.19728 -36.87123 -35.03426 -33.14756 -32.43284 -31.68601 -30.97031 -29.82216 -27.33857 -26.73896 -25.21938 -24.29051 -23.94793 -23.33830 -22.36274 -21.49284 -20.81249 -19.89515 -19.12211 -18.34598 -17.57227 -16.79526 -16.65274 -16.57837 -16.14668 -16.05489 -15.85618 -15.52016 -15.39886 -15.28868 -15.02902 -14.84238 -14.64168 -14.36797 -14.19071 -14.17104 -13.85088 -13.45676 -13.20060 -13.08660 -13.02554 -12.83190 -12.64374 -12.51904 -12.35356 -12.30459 -12.20140 -12.08691 -12.04558 -11.92657 -11.67307 -11.62681 -11.50269 -11.48278 -11.32950 -11.18342 -10.87334 -10.74257 -10.35538 -9.64817 -8.98089 -7.94614 -5.23600 1.47856 1.49934 1.56116 1.58386 1.96561 2.56856 2.79561 3.38119 3.39343 3.66154 3.70868 3.78500 3.84378 3.86420 4.03641 4.12203 4.13217 4.19490 4.22450 4.29607 4.33220 4.37850 4.41351 4.45157 4.52154 4.54912 4.56201 4.61399 4.61975 4.65559 4.80033 4.84274 4.85651 4.91554 4.95438 4.98545 5.02748 5.07014 5.09976 5.10949 5.14624 5.21296 5.24106 5.27088 5.31248 5.41247 5.43817 5.50489 5.56703 5.61504 6.28187 6.29222 6.40441 7.13899 7.33531 8.11735 8.33108 9.29276 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.002032 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.159104 B =13779.502341 C =14680.431450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.091 3.909 4 H 0.076 0.924 5 C -0.139 4.139 6 C -0.109 4.109 7 C -0.108 4.108 8 C -0.097 4.097 9 H 0.117 0.883 10 C 0.516 3.484 11 O -0.587 6.587 12 N -0.607 5.607 13 C 0.113 3.887 14 C -0.121 4.121 15 C -0.073 4.073 16 C -0.109 4.109 17 C 0.151 3.849 18 N -0.752 5.752 19 C -0.243 4.243 20 H 0.078 0.922 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.267 1.267 27 C -0.131 4.131 28 C 0.105 3.895 29 C -0.095 4.095 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.030 0.970 47 H 0.019 0.981 48 H 0.371 0.629 49 H 0.251 0.749 50 H 0.058 0.942 51 H 0.085 0.915 52 H 0.090 0.910 53 H 0.109 0.891 54 H 0.058 0.942 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 -15.622 -24.740 29.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.033 3.967 4 H 0.094 0.906 5 C -0.177 4.177 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.118 4.118 9 H 0.134 0.866 10 C 0.306 3.694 11 O -0.468 6.468 12 N -0.339 5.339 13 C -0.010 4.010 14 C -0.159 4.159 15 C -0.092 4.092 16 C -0.147 4.147 17 C 0.026 3.974 18 N -0.394 5.394 19 C -0.375 4.375 20 H 0.096 0.904 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.192 1.192 27 C -0.169 4.169 28 C -0.016 4.016 29 C -0.133 4.133 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.037 0.963 48 H 0.203 0.797 49 H 0.059 0.941 50 H 0.077 0.923 51 H 0.104 0.896 52 H 0.108 0.892 53 H 0.127 0.873 54 H 0.077 0.923 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.919 -16.155 -24.798 30.002 hybrid contribution -0.192 0.661 1.225 1.405 sum -5.111 -15.494 -23.574 28.669 Atomic orbital electron populations 1.22958 0.79633 1.03635 1.00887 1.87885 1.21331 1.28797 1.95256 1.22172 0.93814 0.84391 0.96307 0.90590 1.22035 1.01927 0.97732 0.96018 1.21476 0.95264 0.96047 1.01826 1.21555 0.99071 1.02276 0.91651 1.21303 0.93187 0.98890 0.98402 0.86564 1.21062 0.87730 0.82502 0.78147 1.90665 1.62427 1.32198 1.61498 1.48263 1.26099 1.08674 1.50891 1.21584 0.86306 1.01841 0.91220 1.21893 1.01836 0.95760 0.96457 1.20999 0.97753 0.95498 0.94983 1.21633 1.00606 0.94751 0.97690 1.20897 0.97290 0.92319 0.86937 1.42688 1.81540 1.11266 1.03918 1.19674 1.35713 0.89547 0.92599 0.90386 1.25633 1.03780 1.02681 0.95224 1.69828 1.57518 1.37863 0.97138 0.85107 0.77782 0.79779 0.76914 1.21273 1.22359 1.19201 1.22030 0.97115 1.02025 0.95764 1.22068 0.99081 0.83156 0.97324 1.21306 0.95738 0.95798 1.00457 0.88964 0.93373 0.92731 0.90524 0.92271 0.89858 0.89623 0.89384 0.92458 0.89991 0.90816 0.90019 0.92774 0.89964 0.92756 0.93083 0.95245 0.96333 0.79745 0.94063 0.92272 0.89620 0.89203 0.87259 0.92343 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.52 16 2 O -0.41 -7.74 10.35 -148.98 -1.54 -9.28 16 3 C 0.09 1.36 2.61 30.60 0.08 1.44 16 4 H 0.08 0.91 7.79 -2.39 -0.02 0.89 16 5 C -0.14 -1.61 5.54 30.59 0.17 -1.44 16 6 C -0.11 -0.88 5.92 30.59 0.18 -0.70 16 7 C -0.11 -1.23 4.99 30.59 0.15 -1.08 16 8 C -0.10 -1.50 1.66 -11.54 -0.02 -1.52 16 9 H 0.12 1.32 6.52 -2.39 -0.02 1.31 16 10 C 0.52 11.48 6.80 87.66 0.60 12.07 16 11 O -0.59 -18.23 15.52 -3.02 -0.05 -18.28 16 12 N -0.61 -11.45 2.97 -818.92 -2.43 -13.89 16 13 C 0.11 2.24 6.42 86.36 0.55 2.80 16 14 C -0.12 -2.49 5.36 30.67 0.16 -2.33 16 15 C -0.07 -1.58 2.15 -10.77 -0.02 -1.60 16 16 C -0.11 -3.28 4.80 30.59 0.15 -3.13 16 17 C 0.15 5.73 6.02 86.38 0.52 6.25 16 18 N -0.75 -38.25 5.60 -343.45 -1.92 -40.18 16 19 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 20 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 21 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 22 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 23 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C -0.13 -2.42 5.14 30.67 0.16 -2.26 16 28 C 0.11 1.43 5.81 86.36 0.50 1.93 16 29 C -0.09 -1.82 4.38 30.59 0.13 -1.68 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.49 8.09 -2.38 -0.02 0.47 16 32 H 0.05 0.47 7.87 -2.39 -0.02 0.46 16 33 H 0.08 0.72 7.87 -2.39 -0.02 0.70 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.09 0.75 7.29 -2.39 -0.02 0.73 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.73 7.04 -2.39 -0.02 1.72 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 46 H 0.03 1.07 6.53 -2.38 -0.02 1.06 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.37 20.30 7.67 -92.71 -0.71 19.59 16 49 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 50 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 51 H 0.09 1.61 6.50 -2.39 -0.02 1.59 16 52 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 53 H 0.11 1.00 5.06 -2.39 -0.01 0.98 16 54 H 0.06 1.40 7.87 -2.39 -0.02 1.38 16 55 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -73.56 416.66 2.35 -71.21 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.14 Total: 28.94 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 5.85 Total: -6.66 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.08 Total: -113.78 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.59 Total: -27.55 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -73.56 2.35 -71.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715176089.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.801 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds