Wall clock time and date at job start Tue Mar 31 2020 23:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99943 * 2 1 4 4 H 1.08995 * 109.47080 * 3.55324 * 3 2 1 5 5 C 1.50702 * 109.46962 * 123.55144 * 3 2 1 6 6 O 1.21272 * 120.00191 * 4.95992 * 5 3 2 7 7 N 1.34775 * 119.99704 * 184.95947 * 5 3 2 8 8 C 1.46503 * 120.00074 * 174.98788 * 7 5 3 9 9 H 1.08999 * 109.46954 * 34.99682 * 8 7 5 10 10 C 1.52996 * 109.47003 * 155.00214 * 8 7 5 11 11 C 1.53002 * 109.46778 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47041 * 299.99568 * 11 10 8 13 13 H 1.08999 * 109.47265 * 299.99847 * 12 11 10 14 14 N 1.46503 * 109.46828 * 180.02562 * 12 11 10 15 15 C 1.36931 * 120.00391 * 85.00317 * 14 12 11 16 16 H 1.08007 * 119.99857 * 359.97438 * 15 14 12 17 17 C 1.38810 * 120.00625 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99587 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00598 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46650 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47271 * 119.99580 * 19 17 15 22 22 H 1.48497 * 109.47140 * 239.99788 * 19 17 15 23 23 C 1.53005 * 109.46998 * 60.00358 * 12 11 10 24 24 C 1.52995 * 109.46678 * 299.99823 * 23 12 11 25 25 C 1.53002 * 109.46990 * 243.55397 * 3 2 1 26 26 C 1.52996 * 109.47303 * 65.44444 * 25 3 2 27 27 C 1.52993 * 109.47153 * 179.97438 * 26 25 3 28 28 C 1.53003 * 109.47373 * 60.00074 * 27 26 25 29 29 C 1.53003 * 109.46777 * 300.00315 * 28 27 26 30 30 C 1.52993 * 109.47427 * 59.99718 * 29 28 27 31 31 H 1.09003 * 109.47005 * 184.86496 * 1 2 3 32 32 H 1.09002 * 109.47074 * 304.86113 * 1 2 3 33 33 H 1.08995 * 109.47243 * 64.86519 * 1 2 3 34 34 H 0.97005 * 120.00014 * 354.98621 * 7 5 3 35 35 H 1.09004 * 109.46949 * 299.99110 * 10 8 7 36 36 H 1.08999 * 109.47700 * 59.99925 * 10 8 7 37 37 H 1.09000 * 109.47317 * 60.00006 * 11 10 8 38 38 H 1.09004 * 109.47088 * 179.97438 * 11 10 8 39 39 H 0.97005 * 119.99912 * 265.00044 * 14 12 11 40 40 H 0.97005 * 119.99937 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.46544 * 180.02562 * 23 12 11 42 42 H 1.09000 * 109.47021 * 59.99769 * 23 12 11 43 43 H 1.09000 * 109.47351 * 299.99744 * 24 23 12 44 44 H 1.09004 * 109.46834 * 180.02562 * 24 23 12 45 45 H 1.08995 * 109.46634 * 185.44832 * 25 3 2 46 46 H 1.08996 * 109.47193 * 300.00160 * 26 25 3 47 47 H 1.08998 * 109.46686 * 60.00053 * 26 25 3 48 48 H 1.09004 * 109.47281 * 300.00499 * 27 26 25 49 49 H 1.09001 * 109.47421 * 180.02562 * 27 26 25 50 50 H 1.08999 * 109.47141 * 179.97438 * 28 27 26 51 51 H 1.09004 * 109.46570 * 59.99990 * 28 27 26 52 52 H 1.08996 * 109.47063 * 299.99461 * 29 28 27 53 53 H 1.09007 * 109.46494 * 179.97438 * 29 28 27 54 54 H 1.09001 * 109.47421 * 179.97438 * 30 29 28 55 55 H 1.09004 * 109.47281 * 59.99492 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2210 2.0545 0.0637 5 6 2.9319 1.4449 1.1841 6 8 3.1468 0.4907 1.9010 7 7 3.5174 2.6302 1.4463 8 6 4.3251 2.7963 2.6573 9 1 4.8508 1.8663 2.8737 10 6 5.3420 3.9189 2.4420 11 6 6.1851 4.0927 3.7069 12 6 5.2732 4.4493 4.8825 13 1 4.7475 5.3792 4.6656 14 7 6.0805 4.6164 6.0935 15 6 6.6749 5.8209 6.3595 16 1 6.5488 6.6478 5.6762 17 6 7.4403 5.9791 7.5066 18 7 7.5943 4.9713 8.3391 19 14 8.2505 7.6226 7.8698 20 1 7.9249 8.5850 6.7867 21 1 7.7486 8.1464 9.1655 22 1 9.7226 7.4427 7.9455 23 6 4.2561 3.3267 5.0978 24 6 3.4132 3.1529 3.8329 25 6 2.8045 1.5100 -1.2916 26 6 1.8476 1.5035 -2.4853 27 6 2.6418 1.7087 -3.7767 28 6 3.6609 0.5784 -3.9339 29 6 4.6178 0.5849 -2.7401 30 6 3.8236 0.3796 -1.4486 31 1 -0.3633 -1.0240 0.0872 32 1 -0.3633 0.5874 0.8433 33 1 -0.3633 0.4365 -0.9303 34 1 3.4041 3.3733 0.8332 35 1 5.9915 3.6650 1.6041 36 1 4.8164 4.8489 2.2255 37 1 6.7108 3.1629 3.9238 38 1 6.9100 4.8922 3.5534 39 1 6.1940 3.8736 6.7071 40 1 8.1289 5.0819 9.1409 41 1 3.6062 3.5810 5.9351 42 1 4.7819 2.3968 5.3147 43 1 2.8874 4.0827 3.6160 44 1 2.6883 2.3534 3.9864 45 1 3.3265 2.4660 -1.2494 46 1 1.3256 0.5476 -2.5273 47 1 1.1219 2.3091 -2.3736 48 1 3.1635 2.6649 -3.7344 49 1 1.9601 1.7046 -4.6272 50 1 4.2264 0.7244 -4.8542 51 1 3.1392 -0.3778 -3.9762 52 1 5.1395 1.5410 -2.6978 53 1 5.3436 -0.2208 -2.8519 54 1 4.5054 0.3838 -0.5982 55 1 3.3019 -0.5765 -1.4910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715192442.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:39 Heat of formation + Delta-G solvation = -131.032904 kcal Electronic energy + Delta-G solvation = -30748.090576 eV Core-core repulsion = 26782.590877 eV Total energy + Delta-G solvation = -3965.499699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.52793 -39.99530 -38.90743 -37.91050 -36.32729 -34.70135 -33.11857 -32.15920 -31.70328 -31.62005 -29.27431 -28.17349 -26.67788 -25.44116 -23.65176 -23.56684 -23.03218 -22.26569 -21.38387 -20.74720 -20.57656 -19.11507 -18.30611 -17.79291 -17.17109 -16.96579 -16.61471 -16.05571 -15.74302 -15.66511 -15.44098 -15.31708 -15.07348 -14.99826 -14.82644 -14.50446 -14.39345 -14.12568 -13.93514 -13.60078 -13.18461 -13.17071 -13.09077 -13.01866 -12.84918 -12.76157 -12.44816 -12.35001 -12.19752 -12.03680 -12.01174 -11.97520 -11.87399 -11.71175 -11.61578 -11.42422 -11.26767 -11.19978 -11.09282 -10.86336 -10.84232 -10.23426 -9.99382 -8.99098 -7.92404 -5.21000 1.47683 1.48661 1.58545 1.60494 1.96753 2.57411 2.96569 3.40768 3.58133 3.63422 3.74361 3.79435 3.87648 3.88544 3.98456 4.08306 4.24739 4.33192 4.38426 4.38851 4.40191 4.41912 4.52111 4.54514 4.57972 4.59203 4.62074 4.67061 4.68078 4.68736 4.76946 4.85518 4.86408 5.00012 5.03736 5.10425 5.12602 5.19044 5.22623 5.26877 5.29127 5.31846 5.33796 5.40631 5.44861 5.47852 5.54918 5.55719 5.63077 5.65245 6.09881 6.29934 6.62725 7.29980 7.34963 8.12396 8.34906 9.31802 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002144 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.282567 B =13054.060396 C =13808.545673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.381 6.381 3 C 0.080 3.920 4 H 0.119 0.881 5 C 0.500 3.500 6 O -0.575 6.575 7 N -0.708 5.708 8 C 0.153 3.847 9 H 0.058 0.942 10 C -0.106 4.106 11 C -0.124 4.124 12 C 0.174 3.826 13 H 0.051 0.949 14 N -0.742 5.742 15 C -0.232 4.232 16 H 0.080 0.920 17 C -0.083 4.083 18 N -0.974 5.974 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.296 1.296 22 H -0.296 1.296 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.085 4.085 26 C -0.109 4.109 27 C -0.116 4.116 28 C -0.119 4.119 29 C -0.117 4.117 30 C -0.107 4.107 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.416 0.584 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.369 0.631 40 H 0.249 0.751 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.055 0.945 52 H 0.067 0.933 53 H 0.054 0.946 54 H 0.033 0.967 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.399 -5.188 -29.646 34.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.298 6.298 3 C 0.018 3.982 4 H 0.136 0.864 5 C 0.287 3.713 6 O -0.453 6.453 7 N -0.361 5.361 8 C 0.048 3.952 9 H 0.076 0.924 10 C -0.144 4.144 11 C -0.165 4.165 12 C 0.066 3.934 13 H 0.069 0.931 14 N -0.381 5.381 15 C -0.364 4.364 16 H 0.098 0.902 17 C -0.275 4.275 18 N -0.625 5.625 19 Si 0.802 3.198 20 H -0.186 1.186 21 H -0.223 1.223 22 H -0.224 1.224 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.104 4.104 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.157 4.157 29 C -0.155 4.155 30 C -0.145 4.145 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.254 0.746 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.200 0.800 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.118 0.882 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.074 0.926 52 H 0.086 0.914 53 H 0.073 0.927 54 H 0.052 0.948 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.132 -5.851 -29.173 33.845 hybrid contribution 0.747 0.477 1.185 1.480 sum -15.385 -5.373 -27.988 32.387 Atomic orbital electron populations 1.23117 0.79358 1.03821 1.01195 1.88008 1.21288 1.26006 1.94546 1.22228 0.95984 0.87692 0.92272 0.86374 1.21500 0.81042 0.82411 0.86363 1.90708 1.62822 1.39915 1.51872 1.45917 1.51438 1.13675 1.25101 1.20804 0.91372 0.98822 0.84218 0.92406 1.21660 0.96933 0.98242 0.97602 1.22016 0.98662 1.00422 0.95372 1.20481 0.90566 0.96243 0.86153 0.93119 1.42723 1.59340 1.11836 1.24153 1.19689 1.22105 0.90721 1.03842 0.90232 1.25596 1.02820 1.01033 0.98013 1.69846 1.46051 1.32312 1.14320 0.85077 0.77425 0.79698 0.77624 1.18615 1.22312 1.22375 1.21639 0.97553 0.98235 0.97812 1.21726 0.97524 1.01941 0.93584 1.21525 0.96342 0.99970 0.92594 1.21559 0.97342 1.02651 0.93076 1.21514 0.97803 0.98700 0.97300 1.21538 0.97344 0.99212 0.97571 1.21526 0.97794 1.01868 0.94302 1.21390 0.97066 0.98878 0.97137 0.89088 0.93708 0.91431 0.74620 0.90340 0.89247 0.94251 0.92841 0.79974 0.94228 0.92505 0.93649 0.89785 0.92888 0.88189 0.92034 0.89964 0.91161 0.90902 0.91396 0.92633 0.91446 0.92697 0.94826 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.71 113.37 1.21 1.48 16 2 O -0.38 -7.80 8.54 -129.99 -1.11 -8.91 16 3 C 0.08 1.28 2.33 29.85 0.07 1.35 16 4 H 0.12 1.15 7.60 -2.39 -0.02 1.13 16 5 C 0.50 11.90 6.14 87.66 0.54 12.44 16 6 O -0.57 -20.29 16.14 15.99 0.26 -20.03 16 7 N -0.71 -13.41 5.00 -442.54 -2.21 -15.63 16 8 C 0.15 3.85 2.50 44.99 0.11 3.96 16 9 H 0.06 1.86 7.51 -2.39 -0.02 1.84 16 10 C -0.11 -2.48 5.39 30.59 0.16 -2.31 16 11 C -0.12 -4.21 5.50 30.59 0.17 -4.04 16 12 C 0.17 6.72 2.77 44.99 0.12 6.85 16 13 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 14 N -0.74 -37.88 5.12 -322.93 -1.65 -39.54 16 15 C -0.23 -12.83 9.93 84.03 0.83 -11.99 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 17 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 18 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 19 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 23 C -0.11 -3.91 5.39 30.59 0.17 -3.74 16 24 C -0.11 -2.93 5.49 30.59 0.17 -2.77 16 25 C -0.09 -1.06 1.99 -10.79 -0.02 -1.09 16 26 C -0.11 -0.94 5.10 30.59 0.16 -0.79 16 27 C -0.12 -0.92 5.92 30.59 0.18 -0.74 16 28 C -0.12 -1.28 5.92 30.60 0.18 -1.10 16 29 C -0.12 -1.64 5.92 30.59 0.18 -1.45 16 30 C -0.11 -1.91 4.82 30.59 0.15 -1.76 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.55 8.12 -2.39 -0.02 0.53 16 33 H 0.07 0.52 7.87 -2.39 -0.02 0.50 16 34 H 0.42 4.61 8.14 -92.70 -0.75 3.86 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.37 20.68 7.80 -92.70 -0.72 19.96 16 40 H 0.25 15.10 8.31 -92.70 -0.77 14.32 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.10 0.90 7.63 -2.39 -0.02 0.88 16 46 H 0.06 0.66 7.56 -2.39 -0.02 0.65 16 47 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 54 H 0.03 0.78 7.40 -2.39 -0.02 0.76 16 55 H 0.05 1.18 7.55 -2.39 -0.02 1.16 16 Total: -1.00 -75.34 421.74 1.82 -73.52 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.63 Total: 32.86 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.85 Total: -10.06 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -3.58 Total: -115.78 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.85 Total: -28.94 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.34 1.82 -73.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715192442.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.508 kcal (2) G-P(sol) polarization free energy of solvation -75.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds