Wall clock time and date at job start Tue Mar 31 2020 21:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99740 * 2 1 4 4 C 1.50695 * 120.00388 * 179.97438 * 2 1 3 5 5 H 1.09007 * 109.47195 * 5.00016 * 4 2 1 6 6 C 1.52998 * 109.47419 * 244.99914 * 4 2 1 7 7 C 1.50699 * 109.47246 * 174.99526 * 6 4 2 8 8 O 1.21280 * 119.99887 * 0.02562 * 7 6 4 9 9 N 1.34779 * 120.00139 * 179.97438 * 7 6 4 10 10 C 1.46928 * 120.62987 * 354.87050 * 9 7 6 11 11 C 1.53195 * 108.77235 * 233.58319 * 10 9 7 12 12 C 1.53035 * 109.31390 * 305.36334 * 11 10 9 13 13 C 1.53045 * 109.53788 * 61.36742 * 12 11 10 14 14 C 1.46931 * 120.63137 * 174.58679 * 9 7 6 15 15 H 1.08997 * 109.58398 * 246.20531 * 14 9 7 16 16 C 1.52999 * 109.58390 * 6.62864 * 14 9 7 17 17 C 1.53004 * 109.47143 * 181.22854 * 16 14 9 18 18 N 1.46500 * 109.47349 * 174.74240 * 17 16 14 19 19 C 1.36932 * 119.99960 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99771 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00043 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99672 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99881 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47614 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47315 * 120.00280 * 23 21 19 26 26 H 1.48504 * 109.46989 * 240.00059 * 23 21 19 27 27 O 1.42899 * 109.47212 * 124.99458 * 4 2 1 28 28 C 1.42896 * 114.00620 * 270.00159 * 27 4 2 29 29 C 1.53004 * 109.47249 * 179.97438 * 28 27 4 30 30 H 1.07994 * 120.00245 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99770 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47085 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47117 * 299.99844 * 3 2 1 34 34 H 1.09001 * 109.47321 * 60.00049 * 3 2 1 35 35 H 1.08993 * 109.47192 * 294.99786 * 6 4 2 36 36 H 1.09002 * 109.47000 * 55.00348 * 6 4 2 37 37 H 1.08994 * 109.58580 * 353.36847 * 10 9 7 38 38 H 1.08997 * 109.58926 * 113.79330 * 10 9 7 39 39 H 1.08998 * 109.49553 * 65.31719 * 11 10 9 40 40 H 1.08996 * 109.49484 * 185.37982 * 11 10 9 41 41 H 1.09005 * 109.46069 * 181.38767 * 12 11 10 42 42 H 1.08995 * 109.46126 * 301.36002 * 12 11 10 43 43 H 1.08999 * 109.49622 * 58.58476 * 13 12 11 44 44 H 1.09001 * 109.49744 * 178.64832 * 13 12 11 45 45 H 1.09001 * 109.47684 * 301.23160 * 16 14 9 46 46 H 1.09002 * 109.47170 * 61.23411 * 16 14 9 47 47 H 1.09002 * 109.46905 * 294.74666 * 17 16 14 48 48 H 1.09001 * 109.46477 * 54.74012 * 17 16 14 49 49 H 0.96994 * 119.99523 * 0.02562 * 18 17 16 50 50 H 0.97003 * 119.99358 * 179.97438 * 22 21 19 51 51 H 1.08998 * 109.47272 * 300.00501 * 28 27 4 52 52 H 1.09003 * 109.46724 * 59.99908 * 28 27 4 53 53 H 1.08994 * 109.46770 * 60.00438 * 29 28 27 54 54 H 1.08999 * 109.47036 * 180.02562 * 29 28 27 55 55 H 1.08999 * 109.47264 * 300.00311 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 1 1.3587 -2.1317 -0.0886 6 6 2.8466 -1.4413 1.3079 7 6 3.5010 -2.7977 1.3625 8 8 3.3558 -3.5783 0.4458 9 7 4.2484 -3.1429 2.4296 10 6 4.5271 -2.1698 3.4947 11 6 6.0420 -2.0958 3.7106 12 6 6.5834 -3.5006 3.9853 13 6 6.3112 -4.3993 2.7769 14 6 4.7948 -4.5012 2.5531 15 1 4.3307 -5.0062 3.4002 16 6 4.5154 -5.2850 1.2691 17 6 5.0583 -6.7083 1.4121 18 7 4.6814 -7.4953 0.2353 19 6 5.0590 -8.8081 0.1399 20 1 5.6344 -9.2634 0.9325 21 6 4.7014 -9.5539 -0.9749 22 7 3.9998 -8.9991 -1.9404 23 14 5.2160 -11.3449 -1.1046 24 1 5.9909 -11.7262 0.1034 25 1 4.0071 -12.2011 -1.2071 26 1 6.0586 -11.5315 -2.3131 27 8 2.9709 -1.3316 -1.1031 28 6 2.4139 -1.8775 -2.3005 29 6 3.4680 -1.8558 -3.4093 30 1 -0.5400 0.9352 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 3.1351 1.1060 -0.0005 33 1 1.8001 1.8767 -0.8900 34 1 1.8001 1.8767 0.8900 35 1 3.6117 -0.6666 1.3556 36 1 2.1658 -1.3322 2.1522 37 1 4.1515 -1.1896 3.2014 38 1 4.0416 -2.4885 4.4170 39 1 6.5174 -1.6909 2.8173 40 1 6.2569 -1.4497 4.5618 41 1 7.6574 -3.4474 4.1638 42 1 6.0893 -3.9147 4.8642 43 1 6.7841 -3.9727 1.8923 44 1 6.7183 -5.3931 2.9635 45 1 3.4404 -5.3222 1.0927 46 1 5.0046 -4.7923 0.4289 47 1 6.1447 -6.6761 1.4950 48 1 4.6391 -7.1688 2.3067 49 1 4.1644 -7.0864 -0.4762 50 1 3.7503 -9.5202 -2.7196 51 1 2.0981 -2.9048 -2.1189 52 1 1.5537 -1.2816 -2.6056 53 1 4.3283 -2.4515 -3.1044 54 1 3.0430 -2.2718 -4.3228 55 1 3.7833 -0.8283 -3.5908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715192679.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:39 Heat of formation + Delta-G solvation = -73.933818 kcal Electronic energy + Delta-G solvation = -31315.911085 eV Core-core repulsion = 27352.887388 eV Total energy + Delta-G solvation = -3963.023697 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.63434 -39.69511 -38.17682 -36.99453 -36.10610 -34.66578 -33.80558 -32.72350 -32.24246 -30.81750 -29.27708 -28.21696 -26.60686 -25.42316 -25.01803 -23.70722 -23.66325 -22.13387 -21.72631 -19.91448 -19.69344 -19.17589 -17.87493 -17.57173 -17.18434 -16.68899 -16.56080 -16.36345 -15.79926 -15.62203 -15.43476 -15.17464 -15.09334 -14.87393 -14.66549 -14.64786 -14.41744 -14.04885 -13.94167 -13.85203 -13.40933 -13.32967 -13.15824 -12.96944 -12.82017 -12.80131 -12.66678 -12.59011 -12.49298 -12.28658 -12.10058 -11.95584 -11.92593 -11.87149 -11.79188 -11.75056 -11.49735 -11.35379 -10.95670 -10.47795 -10.12610 -9.91673 -9.43864 -9.03315 -7.96511 -5.27442 1.19173 1.43124 1.46248 1.56437 1.76219 2.04497 2.53881 2.78577 3.35646 3.44327 3.75076 3.85620 3.88068 3.93062 3.98062 4.11207 4.12088 4.15318 4.20981 4.28332 4.31589 4.38906 4.46052 4.47285 4.51256 4.54641 4.61714 4.72958 4.74743 4.75678 4.78165 4.84507 4.85242 4.92524 4.94415 4.99730 5.00870 5.07413 5.12595 5.18337 5.18987 5.20997 5.24531 5.40195 5.40435 5.49435 5.52694 5.63754 5.76088 5.82903 6.24499 6.32918 6.55330 7.28765 7.36083 8.05715 8.30570 9.27883 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.003340 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.602736 B = 8381.576569 C =10638.036475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C -0.108 4.108 4 C 0.136 3.864 5 H 0.048 0.952 6 C -0.124 4.124 7 C 0.499 3.501 8 O -0.561 6.561 9 N -0.612 5.612 10 C 0.101 3.899 11 C -0.131 4.131 12 C -0.115 4.115 13 C -0.129 4.129 14 C 0.157 3.843 15 H 0.080 0.920 16 C -0.085 4.085 17 C 0.148 3.852 18 N -0.749 5.749 19 C -0.248 4.248 20 H 0.078 0.922 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.291 1.291 26 H -0.291 1.291 27 O -0.382 6.382 28 C 0.066 3.934 29 C -0.144 4.144 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.021 0.979 48 H 0.018 0.982 49 H 0.369 0.631 50 H 0.251 0.749 51 H 0.025 0.975 52 H 0.058 0.942 53 H 0.039 0.961 54 H 0.081 0.919 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 27.037 13.284 30.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.153 4.153 3 C -0.165 4.165 4 C 0.077 3.923 5 H 0.066 0.934 6 C -0.163 4.163 7 C 0.289 3.711 8 O -0.440 6.440 9 N -0.346 5.346 10 C -0.020 4.020 11 C -0.169 4.169 12 C -0.152 4.152 13 C -0.168 4.168 14 C 0.054 3.946 15 H 0.097 0.903 16 C -0.123 4.123 17 C 0.021 3.979 18 N -0.390 5.390 19 C -0.379 4.379 20 H 0.096 0.904 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.810 3.190 24 H -0.187 1.187 25 H -0.218 1.218 26 H -0.218 1.218 27 O -0.302 6.302 28 C -0.010 4.010 29 C -0.201 4.201 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.039 0.961 48 H 0.036 0.964 49 H 0.200 0.800 50 H 0.060 0.940 51 H 0.043 0.957 52 H 0.076 0.924 53 H 0.058 0.942 54 H 0.100 0.900 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.140 26.554 12.911 29.604 hybrid contribution -0.278 -1.502 -1.042 1.849 sum -2.418 25.052 11.869 27.827 Atomic orbital electron populations 1.23911 0.94937 1.02815 0.99950 1.22233 0.95667 0.96086 1.01338 1.20724 0.99953 0.93153 1.02674 1.20857 0.90704 0.94249 0.86455 0.93420 1.21873 1.01666 0.94363 0.98427 1.21220 0.78787 0.89810 0.81331 1.90859 1.62346 1.52860 1.37929 1.48287 1.51429 1.12485 1.22357 1.22090 0.96902 0.92771 0.90266 1.21919 0.94751 0.97262 1.02957 1.21519 1.01899 0.95041 0.96767 1.22061 0.94183 1.01108 0.99402 1.21198 0.94530 0.82047 0.96852 0.90257 1.21857 1.00842 0.92958 0.96652 1.20983 0.96485 0.91430 0.89016 1.42647 1.65508 1.09573 1.21316 1.19744 1.27132 0.88216 1.02823 0.90393 1.25726 1.01615 1.03219 0.96807 1.69893 1.44773 1.37517 1.10199 0.84955 0.77204 0.79184 0.77694 1.18661 1.21757 1.21806 1.87847 1.39385 1.83114 1.19827 1.22375 0.96853 0.96370 0.85447 1.21688 0.98575 1.02775 0.97088 0.86087 0.88990 0.92188 0.91550 0.89708 0.86262 0.85053 0.87413 0.89475 0.92632 0.87685 0.90757 0.90556 0.93480 0.91159 0.92450 0.94044 0.96149 0.96394 0.79993 0.94010 0.95706 0.92407 0.94164 0.90003 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 13.95 67.78 0.95 -1.79 16 2 C -0.15 -2.64 5.05 -16.49 -0.08 -2.73 16 3 C -0.11 -1.44 9.69 71.24 0.69 -0.75 16 4 C 0.14 3.21 1.78 29.85 0.05 3.27 16 5 H 0.05 1.35 7.25 -2.38 -0.02 1.33 16 6 C -0.12 -2.41 3.64 29.85 0.11 -2.30 16 7 C 0.50 14.39 7.49 87.66 0.66 15.05 16 8 O -0.56 -22.56 10.83 10.76 0.12 -22.44 16 9 N -0.61 -14.76 2.97 -794.22 -2.36 -17.12 16 10 C 0.10 1.34 6.33 86.36 0.55 1.89 16 11 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 12 C -0.11 -1.86 5.88 30.62 0.18 -1.68 16 13 C -0.13 -3.27 4.93 30.82 0.15 -3.12 16 14 C 0.16 4.60 3.01 45.12 0.14 4.73 16 15 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 16 C -0.08 -3.50 3.24 30.60 0.10 -3.40 16 17 C 0.15 6.86 5.82 86.38 0.50 7.36 16 18 N -0.75 -43.91 5.60 -343.44 -1.92 -45.83 16 19 C -0.25 -15.18 9.99 84.03 0.84 -14.34 16 20 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 21 C -0.08 -5.09 5.50 84.86 0.47 -4.62 16 22 N -0.97 -64.65 13.06 21.65 0.28 -64.36 16 23 Si 0.98 48.97 29.55 68.60 2.03 51.00 16 24 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 26 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 27 O -0.38 -11.12 9.01 -135.19 -1.22 -12.34 16 28 C 0.07 1.90 6.46 71.98 0.46 2.37 16 29 C -0.14 -3.82 10.28 71.98 0.74 -3.08 16 30 H 0.12 1.35 8.05 -2.91 -0.02 1.32 16 31 H 0.09 1.51 7.84 -2.91 -0.02 1.49 16 32 H 0.06 0.89 7.50 -2.39 -0.02 0.87 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.12 1.83 6.99 -2.39 -0.02 1.82 16 36 H 0.13 1.72 8.11 -2.39 -0.02 1.70 16 37 H 0.11 0.91 5.96 -2.39 -0.01 0.89 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.88 6.93 -2.39 -0.02 1.86 16 45 H 0.06 2.69 6.35 -2.39 -0.02 2.67 16 46 H 0.04 1.94 7.12 -2.39 -0.02 1.92 16 47 H 0.02 0.93 6.91 -2.39 -0.02 0.92 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.37 23.63 7.67 -92.71 -0.71 22.92 16 50 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 51 H 0.02 0.85 8.08 -2.39 -0.02 0.83 16 52 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 53 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 54 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 55 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -81.39 426.37 3.74 -77.64 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: 0.13 Total: 38.04 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 6.69 Total: -4.59 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.00 Total: -127.31 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.10 Total: -34.78 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Total: -81.39 3.74 -77.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715192679.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.711 kcal (2) G-P(sol) polarization free energy of solvation -81.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds