Wall clock time and date at job start Tue Mar 31 2020 21:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50708 * 119.99921 * 2 1 4 4 C 1.50698 * 120.00130 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47003 * 4.99527 * 4 2 1 6 6 C 1.53001 * 109.46813 * 244.99972 * 4 2 1 7 7 C 1.50709 * 109.46716 * 174.99910 * 6 4 2 8 8 O 1.21280 * 120.00184 * 359.97438 * 7 6 4 9 9 N 1.34772 * 119.99903 * 179.97438 * 7 6 4 10 10 C 1.46931 * 120.63004 * 354.22210 * 9 7 6 11 11 C 1.53624 * 108.54636 * 126.36684 * 10 9 7 12 12 C 1.53040 * 109.24185 * 54.84911 * 11 10 9 13 13 C 1.53038 * 109.54109 * 298.51693 * 12 11 10 14 14 C 1.46923 * 120.63295 * 174.49697 * 9 7 6 15 15 H 1.08993 * 109.58840 * 113.79737 * 14 9 7 16 16 C 1.53001 * 109.58314 * 353.37375 * 14 9 7 17 17 C 1.53005 * 109.47137 * 181.67366 * 16 14 9 18 18 N 1.46494 * 109.47396 * 185.07898 * 17 16 14 19 19 C 1.36936 * 120.00241 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00025 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99967 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99759 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00184 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47200 * 89.99739 * 23 21 19 25 25 H 1.48493 * 109.46992 * 210.00007 * 23 21 19 26 26 H 1.48496 * 109.46691 * 329.99712 * 23 21 19 27 27 O 1.42903 * 109.47060 * 124.99852 * 4 2 1 28 28 C 1.42897 * 113.99950 * 270.00146 * 27 4 2 29 29 C 1.52997 * 109.47161 * 180.02562 * 28 27 4 30 30 H 1.08006 * 120.00252 * 180.02562 * 1 2 3 31 31 H 1.08007 * 120.00276 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.46823 * 270.00633 * 3 2 1 33 33 H 1.08998 * 109.46980 * 30.00316 * 3 2 1 34 34 H 1.08993 * 109.46899 * 150.00257 * 3 2 1 35 35 H 1.08997 * 109.47273 * 294.99693 * 6 4 2 36 36 H 1.08992 * 109.47257 * 55.00231 * 6 4 2 37 37 H 1.09000 * 109.58357 * 246.19917 * 10 9 7 38 38 H 1.09003 * 109.58849 * 6.62189 * 10 9 7 39 39 H 1.09006 * 109.62911 * 294.86682 * 11 10 9 40 40 H 1.08993 * 109.43342 * 174.72402 * 11 10 9 41 41 H 1.09000 * 109.46093 * 178.49111 * 12 11 10 42 42 H 1.09005 * 109.44399 * 58.52925 * 12 11 10 43 43 H 1.09001 * 109.49890 * 301.41012 * 13 12 11 44 44 H 1.09004 * 109.52394 * 181.32864 * 13 12 11 45 45 H 1.09001 * 109.47367 * 301.67284 * 16 14 9 46 46 H 1.08999 * 109.47402 * 61.67520 * 16 14 9 47 47 H 1.09001 * 109.46846 * 305.08037 * 17 16 14 48 48 H 1.09004 * 109.46622 * 65.08025 * 17 16 14 49 49 H 0.97001 * 120.00067 * 0.02562 * 18 17 16 50 50 H 0.96994 * 119.99611 * 180.02562 * 22 21 19 51 51 H 1.08998 * 109.47768 * 59.99846 * 28 27 4 52 52 H 1.09009 * 109.47241 * 300.00222 * 28 27 4 53 53 H 1.09001 * 109.46953 * 299.99689 * 29 28 27 54 54 H 1.08998 * 109.47321 * 59.99620 * 29 28 27 55 55 H 1.09000 * 109.47281 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1316 -0.0904 6 6 2.8464 -1.4424 1.3067 7 6 3.5009 -2.7989 1.3601 8 8 3.3550 -3.5791 0.4431 9 7 4.2483 -3.1451 2.4269 10 6 4.5387 -2.1688 3.4858 11 6 4.1217 -2.7731 4.8353 12 6 4.8162 -4.1245 5.0189 13 6 4.3777 -5.0805 3.9072 14 6 4.7931 -4.5040 2.5501 15 1 5.8805 -4.4690 2.4852 16 6 4.2374 -5.3829 1.4277 17 6 4.7735 -6.8076 1.5828 18 7 4.3404 -7.6191 0.4427 19 6 4.7022 -8.9375 0.3639 20 1 5.3072 -9.3789 1.1420 21 6 4.2914 -9.7066 -0.7163 22 7 4.6396 -10.9737 -0.7922 23 14 3.2456 -8.9430 -2.0627 24 1 4.1283 -8.3812 -3.1165 25 1 2.3662 -9.9822 -2.6557 26 1 2.4110 -7.8586 -1.4860 27 8 2.9709 -1.3307 -1.1043 28 6 2.4138 -1.8754 -2.3021 29 6 3.4682 -1.8539 -3.4106 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5401 0.9353 0.0004 32 1 2.2450 1.6198 -1.0276 33 1 1.4744 2.0648 0.5139 34 1 3.0159 1.1748 0.5138 35 1 3.6116 -0.6677 1.3551 36 1 2.1657 -1.3340 2.1510 37 1 5.6059 -1.9472 3.4958 38 1 3.9751 -1.2537 3.3039 39 1 3.0410 -2.9139 4.8551 40 1 4.4164 -2.1002 5.6405 41 1 4.5437 -4.5442 5.9872 42 1 5.8965 -3.9864 4.9739 43 1 3.2946 -5.1995 3.9359 44 1 4.8542 -6.0502 4.0517 45 1 3.1489 -5.3965 1.4819 46 1 4.5483 -4.9808 0.4635 47 1 5.8627 -6.7840 1.6192 48 1 4.3884 -7.2422 2.5053 49 1 3.7974 -7.2227 -0.2565 50 1 4.3529 -11.5109 -1.5472 51 1 1.5537 -1.2793 -2.6068 52 1 2.0980 -2.9030 -2.1214 53 1 3.7843 -0.8266 -3.5914 54 1 4.3281 -2.4504 -3.1058 55 1 3.0432 -2.2691 -4.3245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715192680.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:43 Heat of formation + Delta-G solvation = -71.414592 kcal Electronic energy + Delta-G solvation = -31398.339344 eV Core-core repulsion = 27435.424889 eV Total energy + Delta-G solvation = -3962.914455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65674 -39.71322 -38.20404 -37.16156 -36.13104 -34.70038 -33.81617 -32.98735 -32.39244 -30.85170 -29.50785 -28.23073 -26.63013 -25.30698 -25.00549 -23.70322 -23.54372 -22.23732 -21.71609 -19.94468 -19.81573 -19.57237 -17.96754 -17.58079 -17.18865 -16.66726 -16.62330 -16.34455 -15.90789 -15.63114 -15.43477 -15.27667 -15.15764 -14.87049 -14.76928 -14.51536 -14.43143 -14.11114 -14.06292 -13.90008 -13.68373 -13.42293 -13.20563 -13.06510 -12.89171 -12.79661 -12.69775 -12.62160 -12.45415 -12.28611 -12.13512 -11.98433 -11.92427 -11.89317 -11.83398 -11.77280 -11.52723 -11.38660 -11.01412 -10.48868 -10.14025 -9.92668 -9.49179 -9.33586 -8.08635 -5.40995 1.18046 1.31887 1.33709 1.42369 1.73373 2.02249 2.42504 2.76800 3.22374 3.36896 3.63508 3.84432 3.88280 3.89751 3.92181 4.02135 4.09586 4.13605 4.19156 4.26118 4.30915 4.36908 4.41035 4.45575 4.47207 4.52383 4.55862 4.71480 4.73754 4.74628 4.76082 4.81197 4.85030 4.91676 4.93844 4.99311 5.00279 5.04554 5.12501 5.17461 5.18262 5.20242 5.24310 5.35323 5.41840 5.50235 5.62716 5.69121 5.73542 5.80830 6.16872 6.31602 6.53497 7.01702 7.32675 7.79788 7.99081 9.13067 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008576 B = 0.003891 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.967687 B = 7193.900122 C = 9854.800464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 C -0.108 4.108 4 C 0.137 3.863 5 H 0.049 0.951 6 C -0.126 4.126 7 C 0.503 3.497 8 O -0.563 6.563 9 N -0.610 5.610 10 C 0.101 3.899 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.130 4.130 14 C 0.157 3.843 15 H 0.074 0.926 16 C -0.096 4.096 17 C 0.150 3.850 18 N -0.761 5.761 19 C -0.235 4.235 20 H 0.061 0.939 21 C -0.060 4.060 22 N -0.981 5.981 23 Si 0.952 3.048 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.265 1.265 27 O -0.381 6.381 28 C 0.064 3.936 29 C -0.145 4.145 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.022 0.978 48 H 0.027 0.973 49 H 0.362 0.638 50 H 0.260 0.740 51 H 0.056 0.944 52 H 0.028 0.972 53 H 0.071 0.929 54 H 0.043 0.957 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 33.170 9.942 35.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C -0.165 4.165 4 C 0.079 3.921 5 H 0.067 0.933 6 C -0.165 4.165 7 C 0.293 3.707 8 O -0.442 6.442 9 N -0.344 5.344 10 C -0.021 4.021 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.168 4.168 14 C 0.054 3.946 15 H 0.092 0.908 16 C -0.134 4.134 17 C 0.024 3.976 18 N -0.406 5.406 19 C -0.366 4.366 20 H 0.079 0.921 21 C -0.251 4.251 22 N -0.631 5.631 23 Si 0.780 3.220 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.191 1.191 27 O -0.301 6.301 28 C -0.013 4.013 29 C -0.202 4.202 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.040 0.960 48 H 0.045 0.955 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.074 0.926 52 H 0.046 0.954 53 H 0.090 0.910 54 H 0.062 0.938 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.460 32.652 9.568 34.461 hybrid contribution -0.774 -0.877 -1.144 1.636 sum -6.234 31.775 8.424 33.459 Atomic orbital electron populations 1.23943 0.94929 1.02801 0.99944 1.22241 0.95668 0.96180 1.01331 1.20739 1.00289 0.93162 1.02260 1.20837 0.90681 0.94158 0.86465 0.93271 1.21884 1.01734 0.94513 0.98375 1.21161 0.78550 0.89735 0.81276 1.90791 1.62165 1.53106 1.38105 1.48276 1.51670 1.12135 1.22323 1.22175 1.02459 0.91462 0.85958 1.21989 1.00739 0.96900 0.97094 1.21527 1.00966 0.95226 0.97707 1.22000 1.01170 0.99641 0.93997 1.21060 0.97485 0.81262 0.94839 0.90803 1.21986 0.99553 0.92493 0.99402 1.20969 0.96494 0.90950 0.89221 1.42805 1.63708 1.08390 1.25737 1.19099 1.25779 0.86384 1.05367 0.92127 1.25431 1.02575 0.96117 1.01027 1.69865 1.52371 1.07740 1.33152 0.85446 0.79162 0.77656 0.79771 1.20410 1.21256 1.19083 1.87857 1.39277 1.83221 1.19744 1.22405 0.96884 0.96502 0.85467 1.21701 0.98635 1.02854 0.97037 0.88965 0.86198 0.91963 0.90352 0.91332 0.86127 0.85252 0.90058 0.87223 0.91894 0.87970 0.90743 0.91024 0.92732 0.91253 0.93473 0.91158 0.96038 0.95528 0.80564 0.93149 0.92607 0.95393 0.91018 0.93754 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 13.91 67.78 0.94 -1.51 16 2 C -0.15 -2.38 5.05 -16.48 -0.08 -2.46 16 3 C -0.11 -1.27 9.84 71.24 0.70 -0.57 16 4 C 0.14 2.89 1.86 29.85 0.06 2.95 16 5 H 0.05 1.25 7.25 -2.39 -0.02 1.23 16 6 C -0.13 -2.15 3.57 29.85 0.11 -2.04 16 7 C 0.50 13.03 7.41 87.66 0.65 13.68 16 8 O -0.56 -20.27 10.97 10.74 0.12 -20.15 16 9 N -0.61 -13.34 2.97 -794.19 -2.36 -15.69 16 10 C 0.10 1.19 6.38 86.51 0.55 1.75 16 11 C -0.13 -1.37 6.10 30.82 0.19 -1.18 16 12 C -0.12 -1.75 5.88 30.62 0.18 -1.56 16 13 C -0.13 -3.00 4.82 30.67 0.15 -2.85 16 14 C 0.16 4.25 3.03 44.98 0.14 4.39 16 15 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 16 C -0.10 -3.59 3.29 30.60 0.10 -3.49 16 17 C 0.15 6.55 5.73 86.38 0.50 7.05 16 18 N -0.76 -40.98 5.41 -343.45 -1.86 -42.84 16 19 C -0.24 -14.67 10.47 84.03 0.88 -13.79 16 20 H 0.06 4.04 8.06 -2.91 -0.02 4.01 16 21 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 22 N -0.98 -65.88 13.97 21.65 0.30 -65.58 16 23 Si 0.95 50.05 27.74 68.60 1.90 51.96 16 24 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.27 -13.37 6.52 99.48 0.65 -12.72 16 27 O -0.38 -9.89 9.07 -135.21 -1.23 -11.12 16 28 C 0.06 1.61 6.46 71.98 0.46 2.08 16 29 C -0.15 -3.29 10.28 71.98 0.74 -2.55 16 30 H 0.09 1.36 7.84 -2.91 -0.02 1.34 16 31 H 0.12 1.19 8.04 -2.91 -0.02 1.16 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.64 8.06 -2.39 -0.02 0.62 16 34 H 0.07 0.74 7.02 -2.39 -0.02 0.73 16 35 H 0.12 1.56 6.76 -2.39 -0.02 1.54 16 36 H 0.13 1.48 7.93 -2.39 -0.02 1.46 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 0.73 5.93 -2.39 -0.01 0.72 16 39 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.76 6.86 -2.39 -0.02 1.75 16 45 H 0.05 1.91 7.25 -2.39 -0.02 1.89 16 46 H 0.07 2.99 6.22 -2.39 -0.01 2.98 16 47 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.03 1.15 6.84 -2.39 -0.02 1.13 16 49 H 0.36 19.39 5.53 -92.71 -0.51 18.88 16 50 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 51 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.03 0.83 8.09 -2.38 -0.02 0.81 16 53 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 54 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 55 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -80.73 422.26 3.88 -76.85 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.27 Total: 30.03 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 6.72 Total: -3.45 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -3.91 Total: -124.11 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.11 Total: -31.27 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 1.90 Total: 51.96 kcal Total: -80.73 3.88 -76.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715192680.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.433 kcal (2) G-P(sol) polarization free energy of solvation -80.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds