Wall clock time and date at job start Tue Mar 31 2020 21:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 119.99744 * 2 1 4 4 C 1.50688 * 120.00558 * 180.02562 * 2 1 3 5 5 H 1.09005 * 109.47079 * 354.99091 * 4 2 1 6 6 C 1.53000 * 109.47548 * 114.99437 * 4 2 1 7 7 C 1.50697 * 109.47111 * 185.00364 * 6 4 2 8 8 O 1.21285 * 120.00634 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00114 * 180.02562 * 7 6 4 10 10 C 1.46923 * 120.62697 * 354.85927 * 9 7 6 11 11 C 1.53193 * 108.77858 * 233.58720 * 10 9 7 12 12 C 1.53044 * 109.30979 * 305.36724 * 11 10 9 13 13 C 1.53041 * 109.53872 * 61.36276 * 12 11 10 14 14 C 1.46919 * 120.63442 * 174.58065 * 9 7 6 15 15 H 1.09002 * 109.59073 * 246.20086 * 14 9 7 16 16 C 1.53004 * 109.58750 * 6.62468 * 14 9 7 17 17 C 1.52997 * 109.47037 * 181.23188 * 16 14 9 18 18 N 1.46505 * 109.46809 * 174.74445 * 17 16 14 19 19 C 1.36934 * 120.00089 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00006 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00179 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00153 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00116 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47378 * 89.99771 * 23 21 19 25 25 H 1.48504 * 109.47160 * 210.00211 * 23 21 19 26 26 H 1.48500 * 109.47040 * 329.99889 * 23 21 19 27 27 O 1.42907 * 109.47323 * 234.99705 * 4 2 1 28 28 C 1.42897 * 114.00095 * 89.99628 * 27 4 2 29 29 C 1.53002 * 109.47193 * 180.02562 * 28 27 4 30 30 H 1.07995 * 119.99729 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00314 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.46985 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47232 * 300.00896 * 3 2 1 34 34 H 1.09003 * 109.47050 * 59.99913 * 3 2 1 35 35 H 1.08998 * 109.46931 * 304.99901 * 6 4 2 36 36 H 1.08995 * 109.46629 * 65.00182 * 6 4 2 37 37 H 1.09001 * 109.58857 * 353.37279 * 10 9 7 38 38 H 1.09006 * 109.58820 * 113.80129 * 10 9 7 39 39 H 1.08999 * 109.49450 * 65.31286 * 11 10 9 40 40 H 1.09000 * 109.50028 * 185.38155 * 11 10 9 41 41 H 1.09001 * 109.45767 * 181.38457 * 12 11 10 42 42 H 1.08999 * 109.45588 * 301.35513 * 12 11 10 43 43 H 1.08999 * 109.49830 * 58.58556 * 13 12 11 44 44 H 1.08995 * 109.49892 * 178.65342 * 13 12 11 45 45 H 1.08997 * 109.46871 * 301.23374 * 16 14 9 46 46 H 1.09006 * 109.46841 * 61.23115 * 16 14 9 47 47 H 1.09003 * 109.47216 * 294.73791 * 17 16 14 48 48 H 1.09002 * 109.47348 * 54.74577 * 17 16 14 49 49 H 0.97003 * 120.00174 * 359.97438 * 18 17 16 50 50 H 0.96999 * 120.00417 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.47003 * 300.00366 * 28 27 4 52 52 H 1.09002 * 109.47485 * 59.99752 * 28 27 4 53 53 H 1.08996 * 109.46501 * 299.99515 * 29 28 27 54 54 H 1.08994 * 109.46946 * 59.99601 * 29 28 27 55 55 H 1.09005 * 109.47100 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3049 -0.0006 5 1 1.3587 -2.1316 0.0888 6 6 2.8465 -1.4413 -1.3080 7 6 3.5009 -2.7977 -1.3625 8 8 3.3559 -3.5783 -0.4457 9 7 4.2483 -3.1429 -2.4297 10 6 4.3430 -2.2546 -3.5961 11 6 3.9715 -3.0488 -4.8523 12 6 4.8517 -4.2977 -4.9402 13 6 4.6053 -5.1846 -3.7175 14 6 4.9885 -4.4119 -2.4462 15 1 6.0597 -4.2102 -2.4468 16 6 4.6198 -5.2369 -1.2115 17 6 5.4150 -6.5440 -1.2155 18 7 5.1571 -7.2762 0.0270 19 6 5.7645 -8.4832 0.2491 20 1 6.4340 -8.8953 -0.4915 21 6 5.5207 -9.1767 1.4266 22 7 4.7053 -8.6743 2.3294 23 14 6.3487 -10.8235 1.7293 24 1 7.6463 -10.6061 2.4178 25 1 5.4727 -11.6692 2.5795 26 1 6.5853 -11.5046 0.4310 27 8 2.9711 -1.3315 1.1030 28 6 2.4142 -1.8773 2.3005 29 6 3.4683 -1.8555 3.4093 30 1 -0.5399 -0.9353 0.0004 31 1 -0.5401 0.9353 0.0004 32 1 3.1351 1.1061 -0.0005 33 1 1.8000 1.8769 -0.8899 34 1 1.8001 1.8768 0.8900 35 1 2.1657 -1.3322 -2.1522 36 1 3.6116 -0.6665 -1.3557 37 1 3.6543 -1.4184 -3.4755 38 1 5.3627 -1.8805 -3.6886 39 1 2.9239 -3.3451 -4.7987 40 1 4.1297 -2.4288 -5.7347 41 1 4.6063 -4.8519 -5.8461 42 1 5.9003 -4.0016 -4.9684 43 1 3.5518 -5.4607 -3.6747 44 1 5.2147 -6.0852 -3.7925 45 1 4.8573 -4.6699 -0.3115 46 1 3.5531 -5.4605 -1.2292 47 1 5.1088 -7.1530 -2.0662 48 1 6.4793 -6.3216 -1.2920 49 1 4.5567 -6.9056 0.6927 50 1 4.5351 -9.1587 3.1524 51 1 1.5540 -1.2814 2.6056 52 1 2.0984 -2.9046 2.1190 53 1 4.3286 -2.4513 3.1043 54 1 3.7836 -0.8281 3.5906 55 1 3.0433 -2.2715 4.3228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715192681.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:47 Heat of formation + Delta-G solvation = -73.775044 kcal Electronic energy + Delta-G solvation = -31300.088404 eV Core-core repulsion = 27337.071593 eV Total energy + Delta-G solvation = -3963.016812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.63524 -39.69495 -38.17470 -36.99252 -36.10497 -34.66547 -33.80415 -32.72119 -32.24223 -30.81634 -29.27619 -28.21610 -26.60538 -25.42053 -25.01435 -23.70239 -23.66289 -22.13328 -21.72851 -19.91558 -19.68611 -19.17067 -17.92728 -17.51579 -17.15788 -16.68769 -16.57441 -16.39324 -15.68278 -15.66650 -15.43478 -15.25998 -15.13024 -14.92460 -14.72257 -14.46094 -14.35880 -14.07611 -13.99374 -13.81168 -13.41353 -13.33714 -13.16164 -12.94243 -12.83086 -12.79773 -12.66906 -12.60365 -12.48093 -12.26130 -12.14660 -11.96038 -11.90182 -11.88034 -11.77641 -11.76027 -11.50283 -11.35891 -10.94382 -10.47455 -10.12180 -9.91806 -9.44067 -9.03108 -7.96052 -5.27086 1.19268 1.43045 1.47289 1.55673 1.76281 2.04302 2.54142 2.78544 3.35866 3.44334 3.75118 3.85555 3.89478 3.93307 3.96460 4.11568 4.11802 4.15380 4.20887 4.28080 4.31897 4.41874 4.44364 4.47073 4.51134 4.53397 4.61809 4.73451 4.74927 4.75966 4.79337 4.82783 4.85523 4.93154 4.94332 5.00140 5.01139 5.07565 5.12928 5.18198 5.19277 5.21803 5.24457 5.39691 5.40801 5.49811 5.52176 5.63881 5.75964 5.83058 6.24694 6.33400 6.55335 7.29025 7.36020 8.05996 8.30936 9.28122 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009228 B = 0.003421 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.670739 B = 8181.663046 C =10771.711258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C -0.109 4.109 4 C 0.136 3.864 5 H 0.048 0.952 6 C -0.124 4.124 7 C 0.499 3.501 8 O -0.561 6.561 9 N -0.612 5.612 10 C 0.101 3.899 11 C -0.130 4.130 12 C -0.116 4.116 13 C -0.128 4.128 14 C 0.157 3.843 15 H 0.075 0.925 16 C -0.085 4.085 17 C 0.148 3.852 18 N -0.748 5.748 19 C -0.249 4.249 20 H 0.078 0.922 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.982 3.018 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.266 1.266 27 O -0.383 6.383 28 C 0.067 3.933 29 C -0.145 4.145 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.043 0.957 47 H 0.022 0.978 48 H 0.016 0.984 49 H 0.369 0.631 50 H 0.251 0.749 51 H 0.058 0.942 52 H 0.025 0.975 53 H 0.038 0.962 54 H 0.073 0.927 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 25.342 -15.221 30.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.153 4.153 3 C -0.165 4.165 4 C 0.077 3.923 5 H 0.066 0.934 6 C -0.163 4.163 7 C 0.289 3.711 8 O -0.440 6.440 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.093 0.907 16 C -0.123 4.123 17 C 0.021 3.979 18 N -0.390 5.390 19 C -0.381 4.381 20 H 0.096 0.904 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.809 3.191 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.191 1.191 27 O -0.302 6.302 28 C -0.010 4.010 29 C -0.202 4.202 30 H 0.111 0.889 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.034 0.966 49 H 0.200 0.800 50 H 0.060 0.940 51 H 0.077 0.923 52 H 0.043 0.957 53 H 0.057 0.943 54 H 0.092 0.908 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.843 24.865 -14.830 29.536 hybrid contribution -0.177 -1.468 1.055 1.817 sum -6.020 23.397 -13.774 27.810 Atomic orbital electron populations 1.23910 0.94896 1.02831 0.99921 1.22230 0.95679 0.96060 1.01363 1.20725 0.99949 0.93196 1.02671 1.20859 0.90698 0.94263 0.86438 0.93351 1.21870 1.01781 0.94297 0.98378 1.21222 0.78819 0.89686 0.81416 1.90859 1.61248 1.52900 1.38990 1.48278 1.47894 1.20523 1.17848 1.22089 1.03747 0.92584 0.83639 1.21922 0.99748 0.97008 0.98114 1.21525 1.00836 0.96285 0.96655 1.22058 1.01275 0.98888 0.94451 1.21187 0.95367 0.83378 0.94714 0.90679 1.21859 0.98547 0.94146 0.97765 1.20981 0.96491 0.92384 0.88048 1.42639 1.55263 1.21791 1.19326 1.19705 1.20298 0.96453 1.01615 0.90431 1.25721 1.01412 1.03271 0.96885 1.69880 1.41698 1.40982 1.09796 0.85025 0.77312 0.78846 0.77871 1.21110 1.21949 1.19069 1.87855 1.39409 1.83119 1.19848 1.22368 0.96801 0.96386 0.85405 1.21691 0.98610 1.02744 0.97143 0.88930 0.86092 0.92243 0.89703 0.91556 0.85014 0.86315 0.87288 0.89877 0.92246 0.87713 0.90637 0.90802 0.93131 0.91209 0.92569 0.93821 0.96003 0.96618 0.79984 0.93995 0.92341 0.95658 0.94267 0.90823 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 13.95 67.78 0.95 -1.73 16 2 C -0.15 -2.63 5.05 -16.49 -0.08 -2.72 16 3 C -0.11 -1.46 9.69 71.24 0.69 -0.77 16 4 C 0.14 3.21 1.78 29.84 0.05 3.26 16 5 H 0.05 1.36 7.25 -2.38 -0.02 1.34 16 6 C -0.12 -2.41 3.64 29.85 0.11 -2.30 16 7 C 0.50 14.40 7.49 87.66 0.66 15.06 16 8 O -0.56 -22.56 10.83 10.75 0.12 -22.44 16 9 N -0.61 -14.80 2.97 -794.21 -2.36 -17.16 16 10 C 0.10 1.34 6.32 86.36 0.55 1.88 16 11 C -0.13 -1.55 6.08 30.67 0.19 -1.36 16 12 C -0.12 -1.84 5.88 30.62 0.18 -1.66 16 13 C -0.13 -3.19 4.93 30.82 0.15 -3.04 16 14 C 0.16 4.63 3.01 45.12 0.14 4.76 16 15 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.09 -3.51 3.25 30.59 0.10 -3.41 16 17 C 0.15 6.89 5.82 86.38 0.50 7.39 16 18 N -0.75 -43.98 5.60 -343.44 -1.92 -45.90 16 19 C -0.25 -15.30 9.99 84.03 0.84 -14.46 16 20 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 21 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 22 N -0.97 -64.66 13.06 21.65 0.28 -64.38 16 23 Si 0.98 48.99 29.55 68.60 2.03 51.01 16 24 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 27 O -0.38 -11.26 9.01 -135.19 -1.22 -12.47 16 28 C 0.07 1.94 6.46 71.98 0.46 2.41 16 29 C -0.14 -3.95 10.28 71.98 0.74 -3.21 16 30 H 0.09 1.48 7.84 -2.91 -0.02 1.46 16 31 H 0.12 1.32 8.05 -2.91 -0.02 1.30 16 32 H 0.06 0.90 7.50 -2.39 -0.02 0.88 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.13 1.69 7.48 -2.39 -0.02 1.67 16 36 H 0.12 1.86 7.63 -2.39 -0.02 1.84 16 37 H 0.11 0.88 5.96 -2.39 -0.01 0.87 16 38 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.85 6.93 -2.39 -0.02 1.83 16 45 H 0.06 2.69 6.35 -2.39 -0.02 2.67 16 46 H 0.04 2.00 7.12 -2.38 -0.02 1.99 16 47 H 0.02 0.99 6.91 -2.39 -0.02 0.98 16 48 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 49 H 0.37 23.67 7.67 -92.71 -0.71 22.95 16 50 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16 51 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.03 0.87 8.09 -2.39 -0.02 0.85 16 53 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 54 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 55 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -81.35 426.37 3.74 -77.60 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: 0.13 Total: 38.19 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 6.69 Total: -4.46 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -4.00 Total: -127.44 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.10 Total: -34.91 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.01 kcal Total: -81.35 3.74 -77.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715192681.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.829 kcal (2) G-P(sol) polarization free energy of solvation -81.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds