Wall clock time and date at job start Tue Mar 31 2020 22:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99926 * 2 1 4 4 C 1.52998 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47195 * 178.67718 * 4 3 2 6 6 C 1.50701 * 112.90793 * 291.38357 * 5 4 3 7 7 O 1.21283 * 119.99803 * 125.35737 * 6 5 4 8 8 N 1.34773 * 120.00053 * 305.36504 * 6 5 4 9 9 C 1.46500 * 119.99828 * 175.26920 * 8 6 5 10 10 C 1.53003 * 109.47389 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47419 * 179.97438 * 10 9 8 12 12 C 1.53037 * 109.45936 * 295.02873 * 11 10 9 13 13 C 1.53198 * 109.30984 * 178.60222 * 12 11 10 14 14 N 1.46922 * 108.76669 * 54.65780 * 13 12 11 15 15 C 1.36936 * 120.63336 * 126.35926 * 14 13 12 16 16 H 1.08001 * 120.00060 * 208.56201 * 15 14 13 17 17 C 1.38816 * 119.99854 * 28.56817 * 15 14 13 18 18 N 1.31616 * 120.00139 * 20.54742 * 17 15 14 19 19 Si 1.86803 * 119.99745 * 200.55447 * 17 15 14 20 20 H 1.48500 * 109.47293 * 94.95924 * 19 17 15 21 21 H 1.48498 * 109.46782 * 214.95794 * 19 17 15 22 22 H 1.48493 * 109.47132 * 334.95637 * 19 17 15 23 23 C 1.46927 * 118.73716 * 306.38265 * 14 13 12 24 24 C 1.53039 * 109.45895 * 174.97481 * 11 10 9 25 25 C 1.53783 * 113.61574 * 62.63991 * 5 4 3 26 26 C 1.53776 * 87.08200 * 89.11635 * 25 5 4 27 27 C 1.53778 * 87.08163 * 25.43429 * 26 25 5 28 28 H 1.09003 * 109.47478 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47268 * 300.00011 * 1 2 3 30 30 H 1.09000 * 109.47071 * 59.99934 * 1 2 3 31 31 H 1.09005 * 109.47199 * 59.99745 * 3 2 1 32 32 H 1.09003 * 109.47311 * 300.00014 * 3 2 1 33 33 H 1.09002 * 109.47443 * 58.67905 * 4 3 2 34 34 H 1.08996 * 109.47408 * 298.67536 * 4 3 2 35 35 H 0.96993 * 120.00288 * 355.25845 * 8 6 5 36 36 H 1.08999 * 109.47121 * 299.99599 * 9 8 6 37 37 H 1.09000 * 109.47248 * 59.99715 * 9 8 6 38 38 H 1.08999 * 109.47132 * 300.00169 * 10 9 8 39 39 H 1.09003 * 109.46551 * 59.99435 * 10 9 8 40 40 H 1.09000 * 109.45912 * 55.00014 * 11 10 9 41 41 H 1.09003 * 109.49804 * 298.56588 * 12 11 10 42 42 H 1.08996 * 109.50206 * 58.66448 * 12 11 10 43 43 H 1.08998 * 109.59889 * 294.85989 * 13 12 11 44 44 H 1.09001 * 109.69722 * 174.50687 * 13 12 11 45 45 H 0.96999 * 120.00247 * 180.02562 * 18 17 15 46 46 H 1.09002 * 109.58274 * 293.82415 * 23 14 13 47 47 H 1.08995 * 109.70505 * 173.46693 * 23 14 13 48 48 H 1.09004 * 109.49875 * 301.33440 * 24 11 10 49 49 H 1.09003 * 109.50005 * 61.40109 * 24 11 10 50 50 H 1.09006 * 113.61244 * 334.56462 * 25 5 4 51 51 H 1.08994 * 113.61226 * 203.66677 * 25 5 4 52 52 H 1.08998 * 113.61230 * 139.98439 * 26 25 5 53 53 H 1.09000 * 113.61310 * 270.88473 * 26 25 5 54 54 H 1.09001 * 113.61532 * 89.11553 * 27 26 25 55 55 H 1.09005 * 113.61312 * 219.93188 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5819 -0.0327 6 6 3.9321 3.2935 -1.3418 7 8 3.4199 4.3928 -1.3540 8 7 4.2994 2.7082 -2.4989 9 6 3.9869 3.3525 -3.7770 10 6 4.5101 2.4876 -4.9256 11 6 4.1833 3.1600 -6.2604 12 6 2.6653 3.2088 -6.4484 13 6 2.3408 3.9139 -7.7693 14 7 3.0617 3.2369 -8.8559 15 6 2.3922 2.7834 -9.9610 16 1 2.7685 1.9321 -10.5087 17 6 1.2298 3.4180 -10.3772 18 7 0.9817 4.6531 -9.9961 19 14 0.0178 2.5188 -11.4781 20 1 -1.0414 1.8966 -10.6438 21 1 -0.5997 3.4820 -12.4247 22 1 0.7310 1.4632 -12.2410 23 6 4.5146 3.0554 -8.7340 24 6 4.8147 2.3603 -7.4023 25 6 3.8185 3.4369 1.1997 26 6 5.0698 2.8373 1.8625 27 6 5.6196 2.6168 0.4434 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8558 0.6232 -0.8770 34 1 3.8583 0.6645 0.9024 35 1 4.7707 1.8606 -2.4855 36 1 2.9071 3.4678 -3.8714 37 1 4.4617 4.3329 -3.8155 38 1 5.5899 2.3726 -4.8311 39 1 4.0356 1.5070 -4.8872 40 1 4.5823 4.1743 -6.2633 41 1 2.2686 2.1938 -6.4706 42 1 2.2138 3.7584 -5.6225 43 1 2.6564 4.9557 -7.7147 44 1 1.2682 3.8664 -7.9572 45 1 0.1693 5.0964 -10.2866 46 1 5.0075 4.0273 -8.7582 47 1 4.8785 2.4406 -9.5572 48 1 5.8934 2.3060 -7.2553 49 1 4.3980 1.3532 -7.4150 50 1 2.8864 3.1502 1.6869 51 1 3.8909 4.5096 1.0203 52 1 5.6429 3.5582 2.4456 53 1 4.8758 1.9116 2.4044 54 1 6.1845 3.4653 0.0572 55 1 6.1430 1.6686 0.3204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715206636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:54 Heat of formation + Delta-G solvation = -86.433063 kcal Electronic energy + Delta-G solvation = -30309.588009 eV Core-core repulsion = 26346.022304 eV Total energy + Delta-G solvation = -3963.565704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.80533 -39.72128 -39.05392 -38.45214 -36.68416 -35.10552 -33.18228 -32.43175 -31.52397 -30.24226 -28.05797 -27.12554 -26.62580 -26.07434 -24.50382 -23.80836 -23.54741 -22.15118 -21.92443 -20.66479 -19.51195 -18.70739 -18.22642 -17.48142 -17.25448 -16.95466 -16.77191 -16.45467 -16.08854 -15.83496 -15.70780 -15.45927 -15.31137 -15.10389 -14.85870 -14.41039 -14.29884 -14.09914 -13.87544 -13.66996 -13.41547 -13.25731 -13.05159 -12.96609 -12.75926 -12.59178 -12.54462 -12.39783 -12.33511 -12.18319 -12.16896 -12.06850 -11.90960 -11.79843 -11.53510 -11.42553 -11.20510 -11.07962 -11.00676 -10.67656 -10.55911 -10.54318 -10.07715 -8.69422 -7.89772 -5.33789 1.44040 1.45715 1.55234 1.58163 2.19480 2.49828 2.65273 3.23676 3.38580 3.57513 3.70219 3.78187 3.82056 3.89003 3.91451 3.94783 4.07103 4.13396 4.24796 4.29489 4.36953 4.42094 4.46737 4.50973 4.56127 4.61461 4.66631 4.72046 4.75740 4.77373 4.81333 4.82321 4.87077 4.91672 4.99211 5.02485 5.06699 5.08709 5.10645 5.15579 5.23338 5.28964 5.33332 5.40367 5.41007 5.45325 5.51800 5.53538 5.65691 5.76151 6.12132 6.37402 6.55984 7.13041 7.24524 7.86004 8.38596 9.16641 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.002289 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.233396 B =12228.805943 C =13336.974980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.058 3.942 4 C -0.083 4.083 5 C -0.103 4.103 6 C 0.519 3.481 7 O -0.587 6.587 8 N -0.714 5.714 9 C 0.121 3.879 10 C -0.106 4.106 11 C -0.071 4.071 12 C -0.123 4.123 13 C 0.178 3.822 14 N -0.611 5.611 15 C -0.263 4.263 16 H 0.067 0.933 17 C -0.053 4.053 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.265 1.265 23 C 0.136 3.864 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.128 4.128 27 C -0.113 4.113 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.415 0.585 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.057 0.943 43 H -0.010 1.010 44 H 0.042 0.958 45 H 0.249 0.751 46 H 0.009 0.991 47 H 0.053 0.947 48 H 0.086 0.914 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.079 0.921 53 H 0.103 0.897 54 H 0.078 0.922 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 -10.422 26.888 30.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.018 4.018 4 C -0.121 4.121 5 C -0.106 4.106 6 C 0.307 3.693 7 O -0.468 6.468 8 N -0.366 5.366 9 C -0.003 4.003 10 C -0.143 4.143 11 C -0.090 4.090 12 C -0.162 4.162 13 C 0.052 3.948 14 N -0.335 5.335 15 C -0.393 4.393 16 H 0.084 0.916 17 C -0.248 4.248 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.189 1.189 23 C 0.011 3.989 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.151 4.151 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.252 0.748 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.008 0.992 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.090 0.910 52 H 0.097 0.903 53 H 0.121 0.879 54 H 0.097 0.903 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.358 -9.731 26.788 29.998 hybrid contribution -1.369 0.431 -1.272 1.917 sum 7.989 -9.300 25.516 28.309 Atomic orbital electron populations 1.22913 0.79845 1.03936 1.00434 1.87797 1.21068 1.28138 1.95518 1.22556 0.94920 0.84431 0.99912 1.21229 0.92003 0.93216 1.05606 1.22169 1.01072 0.96338 0.91028 1.21035 0.76563 0.85392 0.86321 1.90688 1.45594 1.22402 1.88068 1.45949 1.59364 1.26096 1.05145 1.21320 0.99806 0.96554 0.82600 1.21694 1.02478 0.98753 0.91423 1.20896 0.94557 0.99188 0.94369 1.22072 0.96868 1.00213 0.97021 1.20519 0.96104 0.91872 0.86326 1.44343 1.02723 1.68414 1.17977 1.19524 1.06551 1.08003 1.05253 0.91553 1.25828 1.02685 0.95520 1.00796 1.70236 1.26333 1.11287 1.50272 0.85288 0.79287 0.77958 0.78196 1.21368 1.22226 1.18918 1.21112 0.84028 0.96837 0.96913 1.21891 1.00497 0.98722 0.93998 1.22928 1.00011 0.99190 0.94235 1.22836 0.95677 1.02124 0.95880 1.22920 0.91865 1.03927 0.96348 0.88009 0.92964 0.94542 0.92328 0.95579 0.89604 0.87588 0.74808 0.93336 0.92812 0.88920 0.90509 0.92357 0.92968 0.92423 0.99162 0.93986 0.94196 0.97316 0.92873 0.89541 0.92340 0.90615 0.90992 0.90272 0.87871 0.90304 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.62 16 2 O -0.41 -7.78 10.70 -148.98 -1.59 -9.38 16 3 C 0.06 1.03 5.64 71.98 0.41 1.43 16 4 C -0.08 -1.06 4.90 30.59 0.15 -0.91 16 5 C -0.10 -1.54 0.80 -52.40 -0.04 -1.58 16 6 C 0.52 11.99 6.21 87.66 0.54 12.54 16 7 O -0.59 -19.40 15.96 -3.04 -0.05 -19.45 16 8 N -0.71 -13.91 5.42 -463.06 -2.51 -16.42 16 9 C 0.12 2.94 5.44 86.38 0.47 3.41 16 10 C -0.11 -2.27 4.80 30.59 0.15 -2.12 16 11 C -0.07 -2.14 2.15 -10.77 -0.02 -2.17 16 12 C -0.12 -4.65 5.14 30.67 0.16 -4.50 16 13 C 0.18 8.91 5.33 86.37 0.46 9.37 16 14 N -0.61 -31.51 2.99 -699.09 -2.09 -33.60 16 15 C -0.26 -14.85 9.55 84.03 0.80 -14.05 16 16 H 0.07 3.64 7.91 -2.91 -0.02 3.62 16 17 C -0.05 -3.04 4.81 84.86 0.41 -2.63 16 18 N -0.94 -57.51 11.47 21.65 0.25 -57.26 16 19 Si 0.96 45.93 29.60 68.60 2.03 47.96 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.14 5.66 6.51 86.36 0.56 6.22 16 24 C -0.11 -3.48 5.36 30.67 0.16 -3.31 16 25 C -0.13 -1.93 6.77 31.12 0.21 -1.72 16 26 C -0.13 -1.17 7.73 31.12 0.24 -0.93 16 27 C -0.11 -1.14 7.20 31.12 0.22 -0.92 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.95 6.64 -2.38 -0.02 0.93 16 32 H 0.03 0.58 7.65 -2.39 -0.02 0.56 16 33 H 0.09 1.00 7.47 -2.39 -0.02 0.98 16 34 H 0.11 0.96 7.32 -2.39 -0.02 0.94 16 35 H 0.41 5.34 7.86 -92.71 -0.73 4.61 16 36 H 0.05 1.42 6.53 -2.39 -0.02 1.40 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 2.07 6.50 -2.39 -0.02 2.05 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 44 H 0.04 2.39 6.21 -2.39 -0.01 2.38 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.05 2.16 7.94 -2.39 -0.02 2.14 16 48 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.08 1.08 6.57 -2.38 -0.02 1.07 16 51 H 0.07 1.46 7.51 -2.39 -0.02 1.44 16 52 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.10 0.60 7.63 -2.39 -0.02 0.58 16 54 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 55 H 0.10 0.58 8.10 -2.38 -0.02 0.56 16 Total: -1.00 -74.80 420.92 2.29 -72.51 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.12 Total: 15.89 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.13 Total: -0.24 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.35 Total: -107.28 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.64 Total: -28.83 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -74.80 2.29 -72.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715206636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.927 kcal (2) G-P(sol) polarization free energy of solvation -74.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds