Wall clock time and date at job start Tue Mar 31 2020 22:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00301 * 2 1 4 4 C 1.52995 * 109.47382 * 149.99641 * 3 2 1 5 5 C 1.53001 * 109.47195 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46794 * 300.00056 * 5 4 3 7 7 C 1.50699 * 109.46903 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00135 * 339.21613 * 7 6 5 9 9 N 1.34780 * 120.00102 * 159.22258 * 7 6 5 10 10 C 1.46930 * 120.62912 * 6.30624 * 9 7 6 11 11 C 1.53192 * 108.77816 * 233.58851 * 10 9 7 12 12 C 1.53036 * 109.31129 * 305.36778 * 11 10 9 13 13 C 1.53045 * 109.53828 * 61.36787 * 12 11 10 14 14 C 1.46920 * 120.63478 * 186.29141 * 9 7 6 15 15 H 1.09003 * 109.70609 * 246.27292 * 14 9 7 16 16 C 1.53001 * 109.58512 * 6.62325 * 14 9 7 17 17 C 1.53005 * 109.47481 * 179.45324 * 16 14 9 18 18 N 1.46496 * 109.47113 * 174.89855 * 17 16 14 19 19 C 1.36939 * 119.99523 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00242 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00134 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99397 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00336 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47262 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47183 * 120.00201 * 23 21 19 26 26 H 1.48505 * 109.47239 * 240.00418 * 23 21 19 27 27 C 1.53002 * 109.47434 * 60.00240 * 6 5 4 28 28 C 1.52995 * 109.46917 * 270.00011 * 3 2 1 29 29 H 1.09003 * 109.47634 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47724 * 300.00407 * 1 2 3 31 31 H 1.08997 * 109.47335 * 60.00283 * 1 2 3 32 32 H 1.09006 * 109.46830 * 29.99503 * 3 2 1 33 33 H 1.09001 * 109.46952 * 60.00464 * 4 3 2 34 34 H 1.09005 * 109.47385 * 300.00007 * 4 3 2 35 35 H 1.08993 * 109.47412 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.47144 * 59.99589 * 5 4 3 37 37 H 1.09001 * 109.47612 * 299.99807 * 6 5 4 38 38 H 1.09002 * 109.58627 * 113.80073 * 10 9 7 39 39 H 1.08998 * 109.70395 * 353.44986 * 10 9 7 40 40 H 1.08994 * 109.49703 * 185.41242 * 11 10 9 41 41 H 1.09003 * 109.51798 * 65.33695 * 11 10 9 42 42 H 1.09002 * 109.45968 * 301.33954 * 12 11 10 43 43 H 1.09003 * 109.44640 * 181.37264 * 12 11 10 44 44 H 1.09003 * 109.49452 * 178.67939 * 13 12 11 45 45 H 1.08997 * 109.52400 * 58.59842 * 13 12 11 46 46 H 1.09001 * 109.47191 * 59.45006 * 16 14 9 47 47 H 1.09001 * 109.47078 * 299.44690 * 16 14 9 48 48 H 1.09001 * 109.46555 * 294.90268 * 17 16 14 49 49 H 1.09000 * 109.46792 * 54.89482 * 17 16 14 50 50 H 0.96990 * 120.00444 * 359.97438 * 18 17 16 51 51 H 0.97008 * 119.99820 * 179.97438 * 22 21 19 52 52 H 1.09001 * 109.47074 * 59.99238 * 27 6 5 53 53 H 1.08991 * 109.47378 * 179.97438 * 27 6 5 54 54 H 1.09001 * 109.47386 * 299.99517 * 28 3 2 55 55 H 1.09000 * 109.47390 * 59.99827 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3588 1.2632 0.7213 5 6 3.9809 2.6611 0.7218 6 6 4.1883 3.1275 -0.7206 7 6 4.8004 4.5046 -0.7201 8 8 4.7060 5.2098 0.2621 9 7 5.4527 4.9525 -1.8111 10 6 5.4581 4.1692 -3.0542 11 6 6.9091 3.9592 -3.4984 12 6 7.6064 5.3171 -3.6081 13 6 7.6146 6.0003 -2.2386 14 6 6.1716 6.2334 -1.7802 15 1 5.6858 6.9438 -2.4493 16 6 6.1698 6.7883 -0.3544 17 6 6.9307 8.1154 -0.3225 18 7 6.8256 8.7065 1.0138 19 6 7.4326 9.9044 1.2821 20 1 7.9891 10.4130 0.5088 21 6 7.3327 10.4649 2.5481 22 7 6.6549 9.8447 3.4907 23 14 8.1612 12.0984 2.9144 24 1 8.8553 12.5858 1.6954 25 1 7.1375 13.0904 3.3306 26 1 9.1492 11.9181 4.0084 27 6 2.8396 3.1697 -1.4419 28 6 2.2177 1.7713 -1.4425 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.3449 1.9994 0.5138 33 1 4.0241 0.5694 0.2074 34 1 3.2110 0.9314 1.7490 35 1 4.9418 2.6310 1.2353 36 1 3.3154 3.3547 1.2358 37 1 4.8537 2.4339 -1.2346 38 1 4.9133 4.7092 -3.8287 39 1 4.9852 3.2025 -2.8815 40 1 6.9242 3.4630 -4.4687 41 1 7.4285 3.3415 -2.7658 42 1 7.0722 5.9429 -4.3230 43 1 8.6320 5.1720 -3.9476 44 1 8.1320 6.9568 -2.3124 45 1 8.1272 5.3641 -1.5172 46 1 6.6539 6.0757 0.3134 47 1 5.1423 6.9509 -0.0291 48 1 7.9797 7.9384 -0.5602 49 1 6.5020 8.7977 -1.0565 50 1 6.3262 8.2496 1.7084 51 1 6.5853 10.2362 4.3755 52 1 2.1742 3.8633 -0.9278 53 1 2.9873 3.5024 -2.4692 54 1 2.8829 1.0774 -1.9563 55 1 1.2569 1.8014 -1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715214274.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:37 Heat of formation + Delta-G solvation = -103.236071 kcal Electronic energy + Delta-G solvation = -31091.511891 eV Core-core repulsion = 27127.217554 eV Total energy + Delta-G solvation = -3964.294338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.89311 -40.01264 -38.53404 -37.28613 -36.82322 -34.56865 -33.82343 -32.50023 -31.79624 -31.04584 -29.28438 -27.51769 -26.45040 -25.38205 -24.57962 -23.76778 -23.38966 -22.14485 -21.77964 -20.84148 -19.87334 -19.21436 -17.73390 -17.56708 -17.25480 -16.88806 -16.63611 -16.07794 -16.00959 -15.66210 -15.47937 -15.39524 -15.15511 -15.02902 -14.79418 -14.48892 -14.39331 -14.25934 -14.02678 -13.80012 -13.37283 -13.30465 -13.14871 -12.94763 -12.91161 -12.80675 -12.58477 -12.37695 -12.16499 -12.14920 -12.08049 -11.92255 -11.88509 -11.85509 -11.76503 -11.55493 -11.51129 -11.36512 -11.30434 -10.96518 -10.38892 -9.88867 -9.51285 -9.03430 -7.96793 -5.27752 1.43338 1.46497 1.56668 1.67623 2.00158 2.53855 2.78532 3.35432 3.44729 3.62104 3.69139 3.79598 3.86095 3.96112 4.06988 4.09239 4.13798 4.16176 4.25881 4.27240 4.30032 4.40054 4.46555 4.49033 4.50080 4.54318 4.56263 4.59914 4.70802 4.71680 4.74704 4.79542 4.81309 4.90383 4.92422 4.98775 5.00933 5.05939 5.11076 5.16370 5.17373 5.18202 5.24931 5.31129 5.37574 5.38179 5.41989 5.50405 5.50928 5.74854 6.24409 6.29047 6.52334 7.28486 7.31135 8.05725 8.30130 9.27650 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.002647 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.839333 B =10576.780049 C =12455.533415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.084 3.916 4 C -0.107 4.107 5 C -0.097 4.097 6 C -0.098 4.098 7 C 0.504 3.496 8 O -0.572 6.572 9 N -0.607 5.607 10 C 0.098 3.902 11 C -0.131 4.131 12 C -0.115 4.115 13 C -0.129 4.129 14 C 0.157 3.843 15 H 0.077 0.923 16 C -0.095 4.095 17 C 0.149 3.851 18 N -0.749 5.749 19 C -0.247 4.247 20 H 0.079 0.921 21 C -0.084 4.084 22 N -0.974 5.974 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.101 4.101 28 C -0.127 4.127 29 H 0.097 0.903 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.038 0.962 47 H 0.067 0.933 48 H 0.023 0.977 49 H 0.018 0.982 50 H 0.369 0.631 51 H 0.251 0.749 52 H 0.053 0.947 53 H 0.092 0.908 54 H 0.086 0.914 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.645 -23.890 -20.164 32.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.027 3.973 4 C -0.144 4.144 5 C -0.135 4.135 6 C -0.119 4.119 7 C 0.293 3.707 8 O -0.451 6.451 9 N -0.340 5.340 10 C -0.024 4.024 11 C -0.169 4.169 12 C -0.153 4.153 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.095 0.905 16 C -0.133 4.133 17 C 0.022 3.978 18 N -0.391 5.391 19 C -0.379 4.379 20 H 0.097 0.903 21 C -0.275 4.275 22 N -0.625 5.625 23 Si 0.810 3.190 24 H -0.186 1.186 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.139 4.139 28 C -0.165 4.165 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.085 0.915 48 H 0.041 0.959 49 H 0.036 0.964 50 H 0.200 0.800 51 H 0.060 0.940 52 H 0.072 0.928 53 H 0.110 0.890 54 H 0.105 0.895 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.477 -23.544 -19.741 31.873 hybrid contribution 0.063 1.319 1.352 1.889 sum -8.414 -22.225 -18.390 30.049 Atomic orbital electron populations 1.22945 0.79997 1.03686 1.00556 1.87863 1.20952 1.28240 1.95241 1.22221 0.94661 0.84115 0.96340 1.21507 0.95601 0.96181 1.01143 1.21265 1.01047 0.96178 0.94990 1.21421 0.99047 0.92607 0.98818 1.21341 0.77817 0.89430 0.82063 1.90828 1.60047 1.58139 1.36067 1.48291 1.51227 1.21395 1.13074 1.22167 0.98433 0.96989 0.84762 1.21936 0.94720 0.97220 1.03070 1.21525 1.01872 0.96690 0.95198 1.21994 0.94709 1.01549 0.98484 1.21097 0.93134 0.84735 0.95720 0.90516 1.21950 1.00765 0.94752 0.95854 1.20965 0.97070 0.93327 0.86442 1.42656 1.63258 1.23518 1.09670 1.19751 1.24739 0.97411 0.95976 0.90303 1.25747 1.02387 1.03267 0.96127 1.69892 1.47809 1.41405 1.03358 0.84945 0.77383 0.78716 0.77925 1.18616 1.21808 1.21798 1.21478 0.93560 0.97721 1.01176 1.21943 1.02282 0.95796 0.96450 0.88458 0.94019 0.93035 0.92698 0.89932 0.91454 0.92271 0.92912 0.86285 0.89612 0.87253 0.87744 0.92157 0.90740 0.90632 0.91047 0.93082 0.94367 0.91501 0.95936 0.96397 0.79977 0.93992 0.92837 0.88953 0.89522 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.51 16 2 O -0.40 -6.93 10.35 -148.98 -1.54 -8.47 16 3 C 0.08 1.35 2.61 30.59 0.08 1.43 16 4 C -0.11 -1.84 5.57 30.59 0.17 -1.67 16 5 C -0.10 -2.12 4.68 30.60 0.14 -1.97 16 6 C -0.10 -1.82 1.66 -11.54 -0.02 -1.84 16 7 C 0.50 13.96 6.69 87.66 0.59 14.54 16 8 O -0.57 -22.51 11.62 -3.03 -0.04 -22.55 16 9 N -0.61 -14.03 2.97 -795.02 -2.36 -16.39 16 10 C 0.10 1.23 5.60 86.36 0.48 1.71 16 11 C -0.13 -1.48 6.08 30.67 0.19 -1.30 16 12 C -0.12 -1.75 5.88 30.62 0.18 -1.57 16 13 C -0.13 -3.09 4.85 30.67 0.15 -2.94 16 14 C 0.16 4.44 3.02 44.98 0.14 4.58 16 15 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.10 -3.84 3.28 30.60 0.10 -3.73 16 17 C 0.15 6.80 5.77 86.38 0.50 7.29 16 18 N -0.75 -43.52 5.60 -343.45 -1.92 -45.44 16 19 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 20 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 21 C -0.08 -5.17 5.50 84.86 0.47 -4.71 16 22 N -0.97 -64.58 13.06 21.65 0.28 -64.30 16 23 Si 0.98 48.79 29.55 68.60 2.03 50.81 16 24 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 27 C -0.10 -1.47 4.91 30.61 0.15 -1.32 16 28 C -0.13 -1.52 5.54 30.61 0.17 -1.35 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 0.48 8.09 -2.39 -0.02 0.46 16 31 H 0.05 0.49 7.87 -2.39 -0.02 0.47 16 32 H 0.05 0.95 7.79 -2.38 -0.02 0.93 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.41 7.89 -2.39 -0.02 1.39 16 37 H 0.12 1.57 6.82 -2.39 -0.02 1.56 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 0.88 4.90 -2.39 -0.01 0.87 16 40 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.83 6.88 -2.39 -0.02 1.81 16 45 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.04 1.71 7.35 -2.39 -0.02 1.69 16 47 H 0.07 3.12 6.11 -2.41 -0.01 3.10 16 48 H 0.02 1.00 6.86 -2.39 -0.02 0.99 16 49 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.37 23.41 7.67 -92.72 -0.71 22.70 16 51 H 0.25 15.94 8.31 -92.70 -0.77 15.17 16 52 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.09 0.98 6.76 -2.39 -0.02 0.97 16 54 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 55 H 0.08 0.80 7.87 -2.39 -0.02 0.78 16 Total: -1.00 -80.29 409.91 2.13 -78.15 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 0.14 Total: 33.75 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 5.55 Total: -5.56 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -4.00 Total: -126.13 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.58 Total: -31.02 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.81 kcal Total: -80.29 2.13 -78.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715214274.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.084 kcal (2) G-P(sol) polarization free energy of solvation -80.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds